C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135636-ENSG00000003137 CGP 9606 2:71453722-72148038
GeneTranscriptPositionBiotype
ENSG00000003137 (CYP26B1)
cytochrome P450, family 26, subfamily B, polypeptide 1 		ENST00000001146 (CYP26B1-001) 72129238-72148038 protein_coding
ENST00000412253 (CYP26B1-002) 72129393-72143084 protein_coding
ENST00000461519 (CYP26B1-004) 72135280-72144415 protein_coding
ENST00000474509 (CYP26B1-003) 72134851-72147862 protein_coding
ENST00000546307 (CYP26B1-201) 72129238-72147862 protein_coding
ENSG00000135636 (DYSF)
dysferlin 		ENST00000258104 (DYSF-001) 71453722-71686768 protein_coding
ENST00000394120 (DYSF-003) 71466702-71686648 protein_coding
ENST00000409366 (DYSF-006) 71466702-71686648 protein_coding
ENST00000409582 (DYSF-011) 71453722-71686648 protein_coding
ENST00000409651 (DYSF-002) 71466702-71686648 protein_coding
ENST00000409744 (DYSF-005) 71466702-71686648 protein_coding
ENST00000409762 (DYSF-004) 71453722-71686648 protein_coding
ENST00000410020 (DYSF-007) 71466702-71686648 protein_coding
ENST00000410041 (DYSF-009) 71466702-71686648 protein_coding
ENST00000413539 (DYSF-021) 71453722-71686648 protein_coding
ENST00000429174 (DYSF-020) 71453722-71686648 protein_coding
ENST00000461565 (DYSF-018) 71570138-71570916 processed_transcript
ENST00000468173 (DYSF-014) 71610779-71644033 processed_transcript
ENST00000472873 (DYSF-012) 71601272-71612689 processed_transcript
ENST00000475076 (DYSF-019) 71576268-71600840 processed_transcript
ENST00000479049 (DYSF-016) 71576899-71686763 processed_transcript
ENST00000487180 (DYSF-013) 71602684-71613376 processed_transcript
ENST00000493767 (DYSF-017) 71588705-71600842 processed_transcript
ENST00000494501 (DYSF-015) 71601296-71612713 processed_transcript
ENSG00000233971 (RPS20P10)
ribosomal protein S20 pseudogene 10 		ENST00000451209 (RPS20P10-001) 71984182-71984434 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003BT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033788-ENSMUSG00000063415 CGP 10090 6:84008590-84593908
GeneTranscriptPositionBiotype
ENSMUSG00000033788 (Dysf)
dysferlin 		ENSMUST00000081904 (Dysf-001) 84019389-84211059 protein_coding
ENSMUST00000089595 (Dysf-010) 84019385-84211059 protein_coding
ENSMUST00000113818 (Dysf-002) 84019386-84211060 protein_coding
ENSMUST00000113821 (Dysf-003) 84008590-84211060 protein_coding
ENSMUST00000113823 (Dysf-201) 84008590-84211042 protein_coding
ENSMUST00000127459 (Dysf-007) 84105373-84112199 processed_transcript
ENSMUST00000128965 (Dysf-011) 84210484-84211041 processed_transcript
ENSMUST00000142711 (Dysf-008) 84146747-84152410 processed_transcript
ENSMUST00000152646 (Dysf-005) 84106551-84116879 retained_intron
ENSMUST00000153860 (Dysf-006) 84149869-84211057 processed_transcript
ENSMUST00000168387 (Dysf-202) 84008915-84211059 protein_coding
ENSMUSG00000063415 (Cyp26b1)
cytochrome P450, family 26, subfamily b, polypeptide 1 		ENSMUST00000077705 (Cyp26b1-201) 84571414-84593810 protein_coding
ENSMUST00000168003 (Cyp26b1-202) 84571414-84593908 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BT_0001ENSG00000003137ENST00000001146ENST00000412253ENST00000461519ENST00000474509ENST00000546307ENSG00000135636ENST00000258104ENST00000394120ENST00000409366ENST00000409582ENST00000409651ENST00000409744ENST00000409762ENST00000410020ENST00000410041ENST00000413539ENST00000429174ENST00000461565ENST00000468173ENST00000472873ENST00000475076ENST00000479049ENST00000487180ENST00000493767ENST00000494501ENSG00000233971ENST00000451209CIL_0003BT_0002ENSMUSG00000033788ENSMUST00000081904ENSMUST00000089595ENSMUST00000113818ENSMUST00000113821ENSMUST00000113823ENSMUST00000127459ENSMUST00000128965ENSMUST00000142711ENSMUST00000152646ENSMUST00000153860ENSMUST00000168387ENSMUSG00000063415ENSMUST00000077705ENSMUST00000168003
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BT_0001ENSG00000003137ENST00000001146ENST00000412253ENST00000461519ENST00000546307ENSG00000135636ENST00000258104ENST00000394120ENST00000409366ENST00000409582ENST00000409744ENST00000409762ENST00000410020ENST00000410041ENST00000429174ENSG00000233971ENST00000451209CIL_0003BT_0002ENSMUSG00000033788ENSMUST00000081904ENSMUST00000089595ENSMUST00000113818ENSMUST00000113821ENSMUST00000113823ENSMUST00000153860ENSMUST00000168387ENSMUSG00000063415ENSMUST00000077705ENSMUST00000168003
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000003137 ENST00000001146 17.770±0.00 2.949±0.00 0.367±0.00 2.429±1.04 2.931±2.54 2.493±0.00 0.349±0.25 11.290±0.00 N/A 0.247±0.00 N/A 0.872±0.00 2.807±1.74 8.067±5.85
ENST00000412253 16.245±0.00 4.460±0.00 N/A 1.259±0.00 5.677±0.00 0.938±0.88 N/A N/A N/A N/A 2.843±0.00 1.029±1.17 1.311±0.76 6.424±0.00
ENST00000461519 N/A N/A N/A N/A 0.531±0.00 0.139±0.00 0.732±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546307 N/A 0.994±0.00 N/A 0.975±0.25 N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A
ENSG00000135636 ENST00000258104 2.617±0.00 4.543±0.00 N/A 0.310±0.00 0.403±0.00 N/A 2.582±1.76 N/A 1.312±0.00 N/A 22.498±13.75 N/A N/A 2.221±0.00
ENST00000394120 N/A N/A N/A N/A N/A N/A 2.488±0.00 N/A N/A N/A 8.327±0.00 N/A N/A N/A
ENST00000409366 N/A N/A N/A N/A 1.015±0.00 N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000409582 N/A N/A N/A N/A N/A N/A N/A N/A 1.523±0.00 N/A N/A 0.931±0.00 4.385±0.00 0.869±0.35
ENST00000409651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409744 1.994±0.00 N/A 0.608±0.00 N/A 1.843±0.00 0.816±0.58 N/A N/A 1.356±0.00 N/A N/A N/A N/A 0.618±0.32
ENST00000409762 N/A N/A N/A N/A N/A 2.676±0.00 N/A 1.133±0.00 N/A N/A N/A N/A N/A N/A
ENST00000410020 7.911±0.00 5.329±0.00 0.701±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.253±0.24 12.112±3.15 N/A
ENST00000410041 N/A N/A N/A N/A N/A N/A N/A 1.923±0.00 N/A 2.267±0.00 N/A 1.421±0.00 14.123±0.00 N/A
ENST00000413539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429174 N/A N/A N/A N/A N/A N/A 2.264±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000461565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479049 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233971 ENST00000451209 0.107±0.00 0.346±0.00 N/A 0.056±0.00 0.170±0.00 0.105±0.00 N/A 0.056±0.00 N/A N/A 0.100±0.00 0.676±0.00 N/A 0.086±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033788 ENSMUST00000081904 7.027±3.65 5.459±1.85 N/A 0.365±0.14 2.943±0.38 N/A 2.723±0.89 4.248±0.61 0.519±0.15 2.747±0.44 1.422±0.00 2.686±1.11 3.171±2.64 0.105±0.00
ENSMUST00000089595 0.877±0.00 N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 0.891±0.00 4.930±1.10 N/A N/A N/A
ENSMUST00000113818 N/A N/A 0.759±0.04 N/A 2.184±0.61 N/A 3.123±0.47 N/A N/A 1.289±0.00 N/A N/A N/A 0.118±0.02
ENSMUST00000113821 N/A N/A 1.096±0.00 N/A 1.383±0.00 N/A N/A N/A N/A N/A 3.452±1.08 N/A N/A 0.143±0.04
ENSMUST00000113823 1.405±0.00 1.478±0.11 N/A 0.075±0.00 1.383±0.83 0.800±0.35 2.653±0.67 N/A N/A 1.352±0.14 N/A 1.349±0.55 6.441±4.90 0.335±0.00
ENSMUST00000127459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153860 6.271±2.73 4.446±0.35 3.757±0.06 0.647±0.33 N/A N/A 14.189±0.00 3.686±0.51 0.620±0.32 N/A 4.320±0.00 2.888±0.01 7.506±4.73 0.508±0.26
ENSMUST00000168387 N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A N/A 0.795±0.24 N/A N/A
ENSMUSG00000063415 ENSMUST00000077705 N/A 0.939±1.16 N/A N/A 0.361±0.11 0.371±0.03 N/A 0.243±0.13 0.853±0.74 0.947±0.59 N/A 0.893±0.21 0.530±0.45 N/A
ENSMUST00000168003 0.661±0.17 N/A N/A 6.189±3.80 0.468±0.00 N/A 2.099±1.40 0.115±0.00 0.059±0.03 N/A 0.650±0.21 0.662±0.00 1.123±0.78 2.111±0.59

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