C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003C0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138039-ENSG00000170820 CGP 9606 2:48686775-49154537
GeneTranscriptPositionBiotype
ENSG00000138039 (LHCGR)
luteinizing hormone/choriogonadotropin receptor 		ENST00000294954 (LHCGR-001) 48686775-48755693 protein_coding
ENST00000401907 (LHCGR-006) 48687669-48755730 protein_coding
ENST00000403273 (LHCGR-004) 48687669-48755730 protein_coding
ENST00000405626 (LHCGR-003) 48687643-48755671 protein_coding
ENST00000428232 (LHCGR-007) 48720040-48755569 protein_coding
ENST00000477576 (LHCGR-008) 48708770-48723514 processed_transcript
ENSG00000170820 (FSHR)
follicle stimulating hormone receptor 		ENST00000304421 (FSHR-003) 48962631-49154481 protein_coding
ENST00000406846 (FSHR-001) 48962157-49154537 protein_coding
ENST00000419927 (FSHR-004) 48983116-49154527 nonsense_mediated_decay
ENST00000454032 (FSHR-002) 48963800-49154433 protein_coding
ENST00000469138 (FSHR-005) 48968765-48997313 processed_transcript
ENSG00000214602 (CTBP2P5)
C-terminal binding protein 2 pseudogene 5 		ENST00000454986 (CTBP2P5-001) 48915267-48916530 processed_pseudogene
ENSG00000232285 (TCEB2P3)
transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 3 		ENST00000416023 (TCEB2P3-001) 48780602-48780895 processed_pseudogene
ENSG00000242441 (GTF2A1L)
general transcription factor IIA, 1-like 		ENST00000403751 (GTF2A1L-001) 48617838-48679607 protein_coding
ENST00000423675 (GTF2A1L-003) 48617848-48646598 nonsense_mediated_decay
ENST00000430487 (GTF2A1L-201) 48617798-48679605 protein_coding
ENST00000437125 (GTF2A1L-006) 48617798-48647042 protein_coding
ENST00000448460 (GTF2A1L-004) 48617798-48646660 protein_coding
ENST00000468326 (GTF2A1L-002) 48617856-48646553 processed_transcript
ENST00000508440 (GTF2A1L-007) 48669797-48733148 protein_coding

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0003C0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024107-ENSMUSG00000032937 CGP 10090 17:88741549-89200612
GeneTranscriptPositionBiotype
ENSMUSG00000024107 (Lhcgr)
luteinizing hormone/choriogonadotropin receptor 		ENSMUST00000024916 (Lhcgr-201) 88741549-88791976 protein_coding
ENSMUSG00000032937 (Fshr)
follicle stimulating hormone receptor 		ENSMUST00000035701 (Fshr-201) 88985170-89200612 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003C0_0001ENSG00000138039ENST00000294954ENST00000401907ENST00000403273ENST00000405626ENST00000428232ENST00000477576ENSG00000170820ENST00000304421ENST00000406846ENST00000419927ENST00000454032ENST00000469138ENSG00000214602ENST00000454986ENSG00000232285ENST00000416023ENSG00000242441ENST00000403751ENST00000423675ENST00000430487ENST00000437125ENST00000448460ENST00000468326ENST00000508440CIL_0003C0_0002ENSMUSG00000024107ENSMUST00000024916ENSMUSG00000032937ENSMUST00000035701
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003C0_0001ENSG00000138039ENST00000294954ENSG00000170820ENST00000304421ENST00000406846ENST00000419927ENST00000454032ENST00000469138ENSG00000214602ENST00000454986ENSG00000232285ENST00000416023ENSG00000242441ENST00000403751ENST00000430487CIL_0003C0_0002ENSMUSG00000024107ENSMUST00000024916ENSMUSG00000032937ENSMUST00000035701
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138039 ENST00000294954 N/A N/A N/A N/A 1.855±0.00 N/A N/A N/A N/A N/A N/A 5.660±0.00 N/A N/A
ENST00000401907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000403273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000405626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428232 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170820 ENST00000304421 N/A N/A N/A 0.026±0.00 N/A N/A N/A 0.091±0.06 0.085±0.00 N/A N/A 0.308±0.18 N/A 0.406±0.00
ENST00000406846 N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A 0.357±0.00
ENST00000419927 N/A N/A 0.057±0.00 0.087±0.00 N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.829±0.00 N/A 0.412±0.00
ENST00000454032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.692±0.00 N/A N/A
ENST00000469138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.483±0.00
ENSG00000214602 ENST00000454986 N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 0.092±0.00 N/A N/A N/A N/A 0.068±0.00
ENSG00000232285 ENST00000416023 N/A N/A N/A N/A N/A 0.533±0.00 N/A N/A 0.362±0.00 N/A N/A N/A N/A 0.183±0.00
ENSG00000242441 ENST00000403751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.646±10.28
ENST00000423675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.232±0.00
ENST00000437125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024107 ENSMUST00000024916 0.106±0.02 0.177±0.09 0.006±0.00 0.100±0.06 0.081±0.04 N/A 0.011±0.00 0.017±0.01 0.003±0.00 0.087±0.01 0.017±0.00 60.838±36.63 0.005±0.00 0.677±0.22
ENSMUSG00000032937 ENSMUST00000035701 N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A 12.378±7.42 N/A 0.830±0.41

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