C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003F7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169840-ENSG00000139515 CGP 9606 13:27792643-27926231
GeneTranscriptPositionBiotype
ENSG00000139515 (PDX1)
pancreatic and duodenal homeobox 1 		ENST00000381033 (PDX1-001) 27920020-27926231 protein_coding
ENSG00000169840 (GSX1)
GS homeobox 1 		ENST00000302945 (GSX1-001) 27792643-27794768 protein_coding
ENSG00000247381 (PDX1-AS1)
PDX1 antisense RNA 1 		ENST00000499662 (PDX1-AS1-001) 27833444-27921404 antisense
CIL_0003F7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000053129-ENSMUSG00000029644 CGP 10090 5:147188696-147278008
GeneTranscriptPositionBiotype
ENSMUSG00000029644 (Pdx1)
pancreatic and duodenal homeobox 1 		ENSMUST00000085591 (Pdx1-001) 147269959-147278008 protein_coding
ENSMUSG00000053129 (Gsx1)
GS homeobox 1 		ENSMUST00000065382 (Gsx1-001) 147188696-147190947 protein_coding
ENSMUSG00000092570 (2210019I11Rik)
RIKEN cDNA 2210019I11 gene 		ENSMUST00000172461 (2210019I11Rik-002) 147238666-147270995 antisense
ENSMUST00000174285 (2210019I11Rik-001) 147228596-147271521 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeBrainBreastColonHeartLiverOvaryPlacentaTestisCIL_0003F7_0001ENSG00000139515ENST00000381033ENSG00000169840ENST00000302945ENSG00000247381ENST00000499662CIL_0003F7_0002ENSMUSG00000029644ENSMUST00000085591ENSMUSG00000053129ENSMUST00000065382ENSMUSG00000092570ENSMUST00000172461ENSMUST00000174285
Region; Gene Transcript'; AdiposeBrainBreastColonHeartLiverOvaryPlacentaTestisCIL_0003F7_0001ENSG00000139515ENST00000381033ENSG00000169840ENST00000302945ENSG00000247381ENST00000499662CIL_0003F7_0002ENSMUSG00000029644ENSMUST00000085591ENSMUSG00000053129ENSMUST00000065382ENSMUSG00000092570ENSMUST00000172461ENSMUST00000174285
Gene Transcript Adipose Brain Breast Colon Heart Liver Ovary Placenta Testis
ENSG00000139515 ENST00000381033 0.049±0.00 0.023±0.00 0.392±0.00 0.010±0.00 N/A 0.071±0.00 2.345±1.60 N/A 0.139±0.03
ENSG00000169840 ENST00000302945 N/A 0.166±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000247381 ENST00000499662 N/A N/A N/A N/A 0.083±0.00 N/A 0.165±0.00 N/A 0.397±0.00
Gene Transcript Adipose Brain Breast Colon Heart Liver Ovary Placenta Testis
ENSMUSG00000029644 ENSMUST00000085591 N/A N/A N/A 0.300±0.09 N/A 0.013±0.01 0.068±0.04 0.012±0.00 0.016±0.01
ENSMUSG00000053129 ENSMUST00000065382 N/A 2.399±1.65 N/A N/A N/A 0.012±0.01 0.029±0.00 N/A 0.012±0.00
ENSMUSG00000092570 ENSMUST00000172461 N/A N/A N/A N/A N/A N/A 0.215±0.20 0.039±0.01 N/A
ENSMUST00000174285 N/A N/A N/A 0.117±0.06 N/A 0.018±0.01 0.057±0.03 0.015±0.01 N/A

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