C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000106355-ENSG00000105778 CGP 9606 7:32485332-32588721
GeneTranscriptPositionBiotype
ENSG00000105778 (AVL9)
AVL9 homolog (S. cerevisiase) 		ENST00000318709 (AVL9-003) 32495489-32588721 protein_coding
ENST00000409301 (AVL9-001) 32495526-32586166 protein_coding
ENST00000446718 (AVL9-002) 32543255-32588711 protein_coding
ENST00000459629 (AVL9-004) 32495521-32539269 processed_transcript
ENST00000467779 (AVL9-007) 32580763-32584206 retained_intron
ENST00000470500 (AVL9-008) 32580207-32584167 retained_intron
ENST00000485228 (AVL9-005) 32495426-32552250 processed_transcript
ENST00000497020 (AVL9-006) 32580791-32586108 retained_intron
ENSG00000106355 (LSM5)
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENST00000223084 (LSM5-002) 32487035-32490863 nonsense_mediated_decay
ENST00000409292 (LSM5-005) 32487029-32490100 protein_coding
ENST00000409782 (LSM5-009) 32487040-32490380 protein_coding
ENST00000409909 (LSM5-007) 32486805-32495283 protein_coding
ENST00000409952 (LSM5-008) 32487063-32495249 protein_coding
ENST00000409987 (LSM5-010) 32487035-32490380 protein_coding
ENST00000410044 (LSM5-004) 32487035-32490361 protein_coding
ENST00000450169 (LSM5-001) 32485332-32490418 protein_coding
ENST00000468872 (LSM5-006) 32487035-32488061 retained_intron
ENST00000480956 (LSM5-003) 32487065-32490371 retained_intron
ENSG00000229358 (DPY19L1P1)
DPY19L1 pseudogene 1 		ENST00000417811 (DPY19L1P1-001) 32580949-32761787 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003FD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000091625-ENSMUSG00000029787 CGP 10090 6:56701063-56761911
GeneTranscriptPositionBiotype
ENSMUSG00000029787 (Avl9)
AVL9 homolog (S. cerevisiase) 		ENSMUST00000031805 (Avl9-001) 56714927-56761911 protein_coding
ENSMUST00000176560 (Avl9-003) 56740913-56754052 retained_intron
ENSMUST00000177249 (Avl9-002) 56714938-56737157 retained_intron
ENSMUSG00000091625 (Lsm5)
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 		ENSMUST00000170382 (Lsm5-001) 56701063-56704692 protein_coding
ENSMUST00000175865 (Lsm5-004) 56701065-56704677 retained_intron
ENSMUST00000176595 (Lsm5-002) 56701246-56704683 processed_transcript
ENSMUST00000177144 (Lsm5-003) 56701123-56704656 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FD_0001ENSG00000105778ENST00000318709ENST00000409301ENST00000446718ENST00000459629ENST00000467779ENST00000470500ENST00000485228ENST00000497020ENSG00000106355ENST00000223084ENST00000409292ENST00000409782ENST00000409909ENST00000409952ENST00000409987ENST00000410044ENST00000450169ENST00000468872ENST00000480956ENSG00000229358ENST00000417811CIL_0003FD_0002ENSMUSG00000029787ENSMUST00000031805ENSMUST00000176560ENSMUST00000177249ENSMUSG00000091625ENSMUST00000170382ENSMUST00000175865ENSMUST00000176595ENSMUST00000177144
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FD_0001ENSG00000105778ENST00000318709ENST00000409301ENST00000446718ENST00000459629ENSG00000106355ENST00000223084ENST00000409292ENST00000409782ENST00000409909ENST00000409952ENST00000409987ENST00000410044ENST00000450169ENST00000468872ENST00000480956ENSG00000229358ENST00000417811CIL_0003FD_0002ENSMUSG00000029787ENSMUST00000031805ENSMUST00000176560ENSMUSG00000091625ENSMUST00000170382ENSMUST00000175865ENSMUST00000176595
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105778 ENST00000318709 3.667±0.00 2.515±0.00 0.992±0.00 4.612±1.43 2.573±0.39 1.829±0.52 1.201±0.63 1.935±0.57 1.539±0.00 1.639±0.31 1.052±0.00 2.964±0.41 2.219±0.54 2.230±1.21
ENST00000409301 N/A N/A 0.745±0.00 1.355±0.00 2.823±0.00 1.809±0.00 0.497±0.00 N/A 1.403±0.00 2.484±0.00 0.916±0.00 3.687±0.00 N/A 1.089±0.00
ENST00000446718 N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459629 N/A N/A 0.529±0.00 N/A 1.154±0.00 0.869±0.00 0.218±0.00 0.334±0.00 0.777±0.00 0.681±0.00 N/A 1.216±0.00 N/A N/A
ENST00000467779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000106355 ENST00000223084 N/A N/A 0.224±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409292 3.147±0.00 9.990±0.00 N/A N/A 11.292±0.00 13.022±0.00 6.141±0.00 5.126±3.73 5.903±0.00 N/A 2.437±1.06 14.029±1.28 5.620±2.37 6.196±3.51
ENST00000409782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.868±0.00
ENST00000409909 1.730±0.00 N/A 0.492±0.00 2.983±0.00 N/A 1.435±0.73 N/A 4.265±0.00 2.335±0.00 1.423±0.00 0.770±0.00 6.535±2.32 5.873±0.24 4.040±0.00
ENST00000409952 N/A N/A 0.807±0.00 N/A 4.475±0.00 N/A 1.346±0.00 N/A 2.872±0.00 2.483±0.00 N/A N/A N/A N/A
ENST00000409987 3.577±0.00 6.240±0.00 N/A 3.496±0.00 N/A 4.549±0.00 6.268±0.00 N/A 6.556±0.00 4.144±0.00 3.160±0.00 11.189±2.74 4.125±0.00 6.059±0.00
ENST00000410044 N/A N/A N/A 2.882±0.00 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450169 1.433±0.00 3.387±0.00 N/A 2.548±0.13 1.370±1.08 0.877±0.15 1.730±0.41 1.757±0.67 1.018±0.28 1.068±0.33 1.081±0.00 3.630±0.99 1.714±0.61 1.372±0.16
ENST00000468872 N/A N/A N/A N/A 2.274±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480956 N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A 0.298±0.00 N/A 2.187±0.00 N/A 1.061±0.00
ENSG00000229358 ENST00000417811 N/A N/A 1.648±0.00 2.323±0.00 1.897±0.00 N/A N/A N/A N/A 1.273±0.00 N/A N/A N/A 4.383±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029787 ENSMUST00000031805 4.302±1.24 4.823±1.06 4.378±0.38 9.022±3.83 3.294±0.89 8.980±2.11 0.989±0.14 4.410±0.26 2.054±0.47 5.311±0.86 0.527±0.07 5.104±1.47 4.858±1.41 1.617±0.77
ENSMUST00000176560 N/A N/A N/A N/A N/A 6.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091625 ENSMUST00000170382 3.235±1.06 N/A 18.963±3.71 21.998±16.02 2.023±0.82 1.914±0.85 3.290±0.48 5.387±1.16 29.458±29.90 3.777±0.64 7.739±0.89 6.152±8.69 31.953±19.47 5.002±1.28
ENSMUST00000175865 N/A N/A N/A 0.103±0.00 0.473±0.21 0.512±0.18 N/A N/A N/A N/A N/A 0.959±0.53 0.683±0.20 0.243±0.21
ENSMUST00000176595 N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A 0.790±0.00 N/A N/A
ENSMUST00000177144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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