C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122507-ENSG00000164619 CGP 9606 7:33129244-34155872
GeneTranscriptPositionBiotype
ENSG00000122507 (BBS9)
Bardet-Biedl syndrome 9 		ENST00000242067 (BBS9-004) 33129532-33606068 protein_coding
ENST00000350941 (BBS9-001) 33129540-33606068 protein_coding
ENST00000355070 (BBS9-005) 33129540-33606068 protein_coding
ENST00000396127 (BBS9-003) 33129540-33606068 protein_coding
ENST00000425508 (BBS9-201) 33146329-33314571 protein_coding
ENST00000432983 (BBS9-009) 33129244-33155667 protein_coding
ENST00000433714 (BBS9-002) 33129562-33605632 nonsense_mediated_decay
ENST00000434373 (BBS9-006) 33344607-33605626 protein_coding
ENST00000442858 (BBS9-010) 33157638-33273114 protein_coding
ENST00000465037 (BBS9-007) 33129557-33177575 processed_transcript
ENST00000482941 (BBS9-008) 33129567-33152836 processed_transcript
ENST00000489708 (BBS9-012) 33505588-33604952 processed_transcript
ENST00000495426 (BBS9-015) 33505582-33534370 retained_intron
ENST00000496029 (BBS9-011) 33383754-33390648 processed_transcript
ENST00000498189 (BBS9-013) 33533687-33605207 retained_intron
ENSG00000164619 (BMPER)
BMP binding endothelial regulator 		ENST00000297161 (BMPER-001) 33904911-34155872 protein_coding
ENST00000436222 (BMPER-004) 33905533-34046313 protein_coding
ENST00000444773 (BMPER-003) 33905539-33966561 nonsense_mediated_decay
ENST00000448280 (BMPER-007) 33904911-33922028 nonsense_mediated_decay
ENST00000476525 (BMPER-006) 34067232-34143360 processed_transcript
ENST00000494786 (BMPER-005) 34042676-34055209 processed_transcript
ENST00000496609 (BMPER-002) 33905503-33937560 retained_intron
ENSG00000173862 (RP11-89N17.1)
 ENST00000311067 (RP11-89N17.1-001) 33725981-33728456 lincRNA
ENSG00000222741 (RNA5SP229)
RNA, 5S ribosomal pseudogene 229 		ENST00000410809 (RNA5SP229-201) 33177740-33177838 rRNA
ENSG00000224946 (AC007312.3)
 ENST00000427493 (AC007312.3-001) 33276834-33277091 processed_pseudogene
ENSG00000227481 (RP11-89N17.2)
 ENST00000455149 (RP11-89N17.2-001) 33730292-33732064 antisense
ENSG00000233219 (RP11-89N17.3)
 ENST00000440074 (RP11-89N17.3-001) 33868501-33874231 lincRNA
ENSG00000236494 (RP11-89N17.4)
 ENST00000420185 (RP11-89N17.4-001) 33793168-33803130 lincRNA
ENST00000440034 (RP11-89N17.4-002) 33795468-33803156 lincRNA
ENSG00000238090 (AC006195.2)
 ENST00000423599 (AC006195.2-001) 33379964-33380886 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003FH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035919-ENSMUSG00000031963 CGP 10090 9:22475715-23485202
GeneTranscriptPositionBiotype
ENSMUSG00000031963 (Bmper)
BMP-binding endothelial regulator 		ENSMUST00000071982 (Bmper-201) 23223076-23485202 protein_coding
ENSMUSG00000035919 (Bbs9)
Bardet-Biedl syndrome 9 (human) 		ENSMUST00000039798 (Bbs9-001) 22475715-22888280 protein_coding
ENSMUST00000124076 (Bbs9-012) 22678750-22888274 retained_intron
ENSMUST00000127296 (Bbs9-005) 22643841-22888280 nonsense_mediated_decay
ENSMUST00000128812 (Bbs9-008) 22475867-22514093 protein_coding
ENSMUST00000130479 (Bbs9-006) 22658280-22680513 retained_intron
ENSMUST00000136084 (Bbs9-011) 22635665-22888280 protein_coding
ENSMUST00000137547 (Bbs9-010) 22574409-22628984 processed_transcript
ENSMUST00000142313 (Bbs9-007) 22475731-22514047 protein_coding
ENSMUST00000147405 (Bbs9-004) 22490829-22888280 protein_coding
ENSMUST00000147712 (Bbs9-002) 22475731-22888274 protein_coding
ENSMUST00000150395 (Bbs9-003) 22475722-22888274 protein_coding
ENSMUST00000152719 (Bbs9-009) 22512457-22579509 processed_transcript
ENSMUSG00000089909 (Gm16164)
predicted gene 16164 		ENSMUST00000160078 (Gm16164-001) 22677851-22678318 processed_pseudogene
ENSMUSG00000089958 (Gm16165)
predicted gene 16165 		ENSMUST00000160140 (Gm16165-001) 22669734-22670528 processed_pseudogene
ENSMUSG00000090067 (Gm2976)
predicted gene 2976 		ENSMUST00000160362 (Gm2976-001) 22479934-22480446 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FH_0001ENSG00000122507ENST00000242067ENST00000350941ENST00000355070ENST00000396127ENST00000425508ENST00000432983ENST00000433714ENST00000434373ENST00000442858ENST00000465037ENST00000482941ENST00000489708ENST00000495426ENST00000496029ENST00000498189ENSG00000164619ENST00000297161ENST00000436222ENST00000444773ENST00000448280ENST00000476525ENST00000494786ENST00000496609ENSG00000173862ENST00000311067ENSG00000222741ENST00000410809ENSG00000224946ENST00000427493ENSG00000227481ENST00000455149ENSG00000233219ENST00000440074ENSG00000236494ENST00000420185ENST00000440034ENSG00000238090ENST00000423599CIL_0003FH_0002ENSMUSG00000031963ENSMUST00000071982ENSMUSG00000035919ENSMUST00000039798ENSMUST00000124076ENSMUST00000127296ENSMUST00000128812ENSMUST00000130479ENSMUST00000136084ENSMUST00000137547ENSMUST00000142313ENSMUST00000147405ENSMUST00000147712ENSMUST00000150395ENSMUST00000152719ENSMUSG00000089909ENSMUST00000160078ENSMUSG00000089958ENSMUST00000160140ENSMUSG00000090067ENSMUST00000160362
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FH_0001ENSG00000122507ENST00000242067ENST00000350941ENST00000355070ENST00000396127ENST00000433714ENST00000434373ENST00000442858ENST00000482941ENST00000495426ENSG00000164619ENST00000297161ENST00000436222ENST00000476525ENST00000494786ENST00000496609ENSG00000173862ENST00000311067ENSG00000222741ENST00000410809ENSG00000224946ENST00000427493ENSG00000227481ENST00000455149ENSG00000233219ENST00000440074ENSG00000236494ENST00000420185ENST00000440034ENSG00000238090ENST00000423599CIL_0003FH_0002ENSMUSG00000031963ENSMUST00000071982ENSMUSG00000035919ENSMUST00000039798ENSMUST00000124076ENSMUST00000127296ENSMUST00000147405ENSMUST00000147712ENSMUST00000150395ENSMUST00000152719ENSMUSG00000089909ENSMUST00000160078ENSMUSG00000089958ENSMUST00000160140ENSMUSG00000090067ENSMUST00000160362
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122507 ENST00000242067 N/A N/A N/A 0.813±0.26 0.859±0.00 1.191±0.00 N/A N/A 1.175±0.00 N/A N/A 2.123±0.00 N/A 1.269±0.00
ENST00000350941 N/A N/A 0.497±0.00 N/A N/A N/A 0.468±0.02 N/A 0.164±0.00 0.637±0.00 N/A 0.614±0.00 N/A N/A
ENST00000355070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.384±0.17 N/A N/A
ENST00000396127 N/A N/A N/A 1.047±0.00 0.374±0.00 N/A N/A 0.301±0.00 N/A N/A 0.178±0.00 N/A 0.419±0.00 N/A
ENST00000425508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433714 0.356±0.00 1.263±0.00 N/A 1.423±0.00 1.554±0.42 1.901±0.00 0.661±0.00 2.091±0.00 0.233±0.00 1.551±0.00 0.592±0.00 0.924±0.23 0.979±0.39 4.250±1.79
ENST00000434373 0.507±0.00 0.703±0.00 1.115±0.00 2.331±0.00 N/A N/A 0.919±0.43 0.891±0.56 0.815±0.54 1.256±0.00 0.371±0.00 2.040±0.00 1.303±0.26 N/A
ENST00000442858 N/A N/A N/A N/A N/A N/A N/A 3.799±0.00 N/A N/A N/A N/A N/A N/A
ENST00000465037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482941 1.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.449±0.00 1.832±0.00 N/A N/A
ENST00000489708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495426 N/A N/A N/A N/A N/A N/A N/A 1.294±0.00 N/A N/A N/A N/A N/A N/A
ENST00000496029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164619 ENST00000297161 0.519±0.00 5.991±0.00 N/A 1.507±0.35 0.436±0.29 0.362±0.28 0.173±0.06 0.804±0.69 0.709±0.44 1.133±0.01 0.331±0.00 0.327±0.27 2.359±0.62 0.376±0.13
ENST00000436222 N/A N/A N/A 7.708±0.00 N/A 0.313±0.00 N/A 2.809±0.00 1.295±0.00 3.023±0.00 0.701±0.00 0.493±0.00 N/A N/A
ENST00000444773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476525 N/A N/A N/A N/A 1.454±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494786 N/A N/A N/A N/A N/A N/A N/A N/A 0.890±0.00 N/A N/A N/A N/A N/A
ENST00000496609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A
ENSG00000173862 ENST00000311067 N/A 0.064±0.00 0.407±0.00 N/A 0.033±0.00 0.419±0.00 0.015±0.00 N/A 0.143±0.00 N/A N/A 0.083±0.00 N/A 0.051±0.02
ENSG00000222741 ENST00000410809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.572±0.00 N/A N/A
ENSG00000224946 ENST00000427493 N/A N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.538±0.00
ENSG00000227481 ENST00000455149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.01 N/A N/A
ENSG00000233219 ENST00000440074 N/A N/A N/A N/A 0.146±0.00 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236494 ENST00000420185 N/A 0.008±0.00 0.241±0.00 0.087±0.00 0.053±0.00 N/A 0.095±0.00 0.489±0.00 0.266±0.00 0.345±0.00 N/A 0.070±0.07 0.046±0.00 0.038±0.01
ENST00000440034 0.011±0.00 0.011±0.00 0.313±0.00 0.043±0.00 0.236±0.21 0.224±0.00 0.058±0.05 0.176±0.04 0.166±0.00 0.183±0.00 N/A 0.095±0.10 N/A 0.035±0.00
ENSG00000238090 ENST00000423599 0.055±0.00 0.020±0.00 0.063±0.00 N/A 0.122±0.08 N/A 0.036±0.00 0.051±0.01 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031963 ENSMUST00000071982 2.541±0.53 0.517±0.26 0.470±0.15 2.312±0.63 3.848±0.84 0.476±0.11 0.688±0.36 0.166±0.03 0.235±0.12 6.481±0.73 1.020±0.35 2.303±0.64 3.718±4.71 0.176±0.08
ENSMUSG00000035919 ENSMUST00000039798 1.311±0.61 1.365±0.34 2.432±0.43 1.695±0.78 1.790±0.71 0.807±0.15 0.726±0.16 1.758±0.53 0.758±0.22 4.044±0.68 0.931±0.48 2.375±0.57 1.589±0.49 7.286±1.92
ENSMUST00000124076 3.470±0.55 3.853±1.50 N/A 2.681±0.00 4.550±1.03 2.697±0.73 1.101±0.00 4.083±1.18 1.258±0.45 5.168±1.89 N/A 10.512±3.57 N/A 18.844±4.57
ENSMUST00000127296 1.557±0.00 N/A 1.183±0.00 1.675±0.00 2.349±1.00 1.175±0.30 1.601±0.00 N/A 0.589±0.10 2.213±0.00 0.686±0.17 2.882±0.55 1.377±0.32 13.811±0.00
ENSMUST00000128812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147405 N/A N/A N/A 3.109±1.88 N/A N/A N/A N/A N/A N/A 0.408±0.06 N/A 0.361±0.00 N/A
ENSMUST00000147712 0.790±0.02 N/A 1.577±0.36 1.128±0.51 N/A 0.863±0.00 0.724±0.31 1.364±0.44 0.474±0.10 1.441±0.58 0.343±0.06 2.227±1.54 0.506±0.14 N/A
ENSMUST00000150395 0.716±0.00 0.438±0.09 1.155±0.04 0.536±0.00 1.526±0.75 1.676±0.00 0.537±0.24 1.222±0.29 0.369±0.19 1.175±0.10 0.577±0.14 1.442±0.28 0.302±0.00 4.504±1.57
ENSMUST00000152719 N/A N/A N/A 2.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.143±0.00 N/A
ENSMUSG00000089909 ENSMUST00000160078 N/A N/A 0.065±0.01 0.105±0.08 N/A 0.174±0.06 N/A N/A N/A 0.086±0.00 N/A N/A 0.047±0.00 0.289±0.21
ENSMUSG00000089958 ENSMUST00000160140 N/A N/A 0.022±0.00 0.421±0.40 0.175±0.09 0.091±0.00 N/A 0.043±0.00 N/A 0.126±0.02 N/A 0.290±0.00 0.026±0.00 0.098±0.04
ENSMUSG00000090067 ENSMUST00000160362 0.084±0.00 N/A 0.104±0.00 0.063±0.00 0.290±0.00 N/A N/A 0.082±0.00 N/A 0.199±0.10 N/A N/A 0.119±0.12 0.346±0.07

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