C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091664-ENSG00000183161 CGP 9606 11:22338097-22626787
GeneTranscriptPositionBiotype
ENSG00000091664 (SLC17A6)
solute carrier family 17 (vesicular glutamate transporter), member 6 		ENST00000263160 (SLC17A6-001) 22338097-22379503 protein_coding
ENST00000534115 (SLC17A6-002) 22342977-22360965 retained_intron
ENSG00000148935 (GAS2)
growth arrest-specific 2 		ENST00000278187 (GAS2-002) 22668108-22812996 protein_coding
ENST00000454584 (GAS2-001) 22666615-22813055 protein_coding
ENST00000524701 (GAS2-003) 22668108-22813001 nonsense_mediated_decay
ENST00000526665 (GAS2-009) 22755648-22755953 processed_transcript
ENST00000528582 (GAS2-010) 22625642-22749190 protein_coding
ENST00000532398 (GAS2-005) 22674773-22749261 protein_coding
ENST00000533092 (GAS2-008) 22666583-22702630 processed_transcript
ENST00000533363 (GAS2-007) 22667076-22726432 protein_coding
ENST00000534801 (GAS2-006) 22672577-22737760 protein_coding
ENSG00000183161 (FANCF)
Fanconi anemia, complementation group F 		ENST00000327470 (FANCF-001) 22622519-22626787 protein_coding
ENSG00000254768 (CTD-2140G10.2)
 ENST00000528009 (CTD-2140G10.2-003) 22283730-22338245 antisense
ENST00000530569 (CTD-2140G10.2-002) 22317752-22338224 antisense
ENST00000531304 (CTD-2140G10.2-001) 22319820-22338224 antisense
ENSG00000255323 (LINC01495)
long intergenic non-protein coding RNA 1495 		ENST00000532380 (LINC01495-001) 22445688-22492019 lincRNA
ENST00000534135 (LINC01495-002) 22445688-22447376 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003FU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030500-ENSMUSG00000092118 CGP 10090 7:51621830-51862267
GeneTranscriptPositionBiotype
ENSMUSG00000030498 (Gas2)
growth arrest specific 2 		ENSMUST00000051912 (Gas2-001) 51878967-51994453 protein_coding
ENSMUST00000107589 (Gas2-004) 51862427-51965987 protein_coding
ENSMUST00000107591 (Gas2-002) 51879050-51994458 protein_coding
ENSMUST00000129604 (Gas2-003) 51862015-51994975 nonsense_mediated_decay
ENSMUST00000132335 (Gas2-005) 51863904-51864397 retained_intron
ENSMUST00000145049 (Gas2-006) 51880331-51943729 protein_coding
ENSMUST00000145723 (Gas2-008) 51943684-51956434 processed_transcript
ENSMUST00000155925 (Gas2-007) 51926436-51943767 processed_transcript
ENSMUSG00000030500 (Slc17a6)
solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 		ENSMUST00000032710 (Slc17a6-201) 51621830-51671125 protein_coding
ENSMUSG00000078636 (Gm7336)
predicted gene 7336 		ENSMUST00000107041 (Gm7336-201) 51746697-51747698 processed_pseudogene
ENSMUSG00000092118 (Fancf)
Fanconi anemia, complementation group F 		ENSMUST00000169357 (Fancf-201) 51860577-51862267 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FU_0001ENSG00000091664ENST00000263160ENST00000534115ENSG00000148935ENST00000278187ENST00000454584ENST00000524701ENST00000526665ENST00000528582ENST00000532398ENST00000533092ENST00000533363ENST00000534801ENSG00000183161ENST00000327470ENSG00000254768ENST00000528009ENST00000530569ENST00000531304ENSG00000255323ENST00000532380ENST00000534135CIL_0003FU_0002ENSMUSG00000030498ENSMUST00000051912ENSMUST00000107589ENSMUST00000107591ENSMUST00000129604ENSMUST00000132335ENSMUST00000145049ENSMUST00000145723ENSMUST00000155925ENSMUSG00000030500ENSMUST00000032710ENSMUSG00000078636ENSMUST00000107041ENSMUSG00000092118ENSMUST00000169357
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FU_0001ENSG00000091664ENST00000263160ENSG00000148935ENST00000278187ENST00000454584ENST00000524701ENST00000532398ENST00000533363ENST00000534801ENSG00000183161ENST00000327470ENSG00000254768ENST00000528009ENST00000530569ENSG00000255323ENST00000532380ENST00000534135CIL_0003FU_0002ENSMUSG00000030498ENSMUST00000051912ENSMUST00000107589ENSMUST00000107591ENSMUST00000129604ENSMUST00000145049ENSMUSG00000030500ENSMUST00000032710ENSMUSG00000078636ENSMUST00000107041ENSMUSG00000092118ENSMUST00000169357
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091664 ENST00000263160 N/A N/A N/A 3.906±0.51 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.00
ENST00000534115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148935 ENST00000278187 N/A N/A 0.265±0.00 N/A N/A N/A N/A N/A 1.779±0.00 N/A N/A N/A N/A N/A
ENST00000454584 N/A N/A 0.414±0.00 N/A N/A N/A 1.084±0.46 N/A 1.099±0.00 0.362±0.07 N/A 0.675±0.00 N/A N/A
ENST00000524701 N/A N/A N/A 0.438±0.00 N/A 0.272±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532398 N/A N/A 1.187±0.00 1.813±0.00 N/A N/A N/A N/A 1.239±0.00 N/A 3.214±0.00 N/A N/A N/A
ENST00000533092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533363 N/A N/A N/A 3.689±0.00 N/A N/A 2.366±0.00 11.064±0.00 2.516±0.00 N/A N/A N/A N/A N/A
ENST00000534801 N/A N/A N/A 3.933±0.00 N/A N/A N/A N/A N/A N/A 3.528±0.00 2.079±0.00 N/A N/A
ENSG00000183161 ENST00000327470 N/A 2.564±0.00 0.580±0.00 0.857±0.00 1.346±0.00 1.060±0.39 0.557±0.08 1.784±0.09 1.054±0.00 N/A 0.250±0.00 1.894±0.93 0.950±0.05 0.566±0.00
ENSG00000254768 ENST00000528009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.01
ENST00000530569 0.034±0.00 0.069±0.00 N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000531304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000255323 ENST00000532380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.639±0.19
ENST00000534135 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.296±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030498 ENSMUST00000051912 N/A N/A 0.416±0.08 1.171±0.00 0.798±0.00 N/A 0.452±0.06 62.949±4.19 5.293±4.34 N/A 0.508±0.11 3.397±1.97 0.538±0.33 0.195±0.00
ENSMUST00000107589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00
ENSMUST00000107591 N/A N/A N/A 1.361±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.08 N/A
ENSMUST00000129604 1.658±0.65 5.868±1.76 0.549±0.12 2.484±0.51 0.849±0.37 1.062±0.14 0.239±0.00 6.382±0.70 2.320±1.40 0.863±0.33 0.155±0.04 3.420±2.08 0.417±0.33 0.501±0.07
ENSMUST00000132335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145049 N/A N/A N/A N/A N/A N/A 0.817±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030500 ENSMUST00000032710 0.009±0.00 0.051±0.01 0.003±0.00 12.926±3.91 N/A 0.024±0.00 N/A N/A 0.003±0.00 N/A N/A 0.004±0.00 0.010±0.01 0.294±0.12
ENSMUSG00000078636 ENSMUST00000107041 N/A N/A 0.008±0.00 16.049±0.00 N/A N/A N/A N/A 28.016±0.00 0.032±0.00 N/A N/A N/A N/A
ENSMUSG00000092118 ENSMUST00000169357 5.150±0.00 6.432±2.46 2.607±0.50 5.045±1.26 3.179±0.00 4.013±0.70 N/A N/A 4.548±2.48 2.219±0.26 0.444±0.13 8.230±6.27 2.757±2.20 0.873±0.03

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