C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003HV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135930-ENSG00000115468 CGP 9606 2:232550052-232682781
GeneTranscriptPositionBiotype
ENSG00000115468 (EFHD1)
EF-hand domain family, member D1 		ENST00000264059 (EFHD1-001) 232633228-232682781 protein_coding
ENST00000409613 (EFHD1-003) 232606057-232682340 protein_coding
ENST00000409708 (EFHD1-002) 232638141-232682774 protein_coding
ENST00000410095 (EFHD1-004) 232662733-232682770 protein_coding
ENST00000427698 (EFHD1-007) 232661695-232672438 protein_coding
ENST00000442845 (EFHD1-006) 232633716-232681774 nonsense_mediated_decay
ENST00000611312 (EFHD1-201) 232662742-232682780 protein_coding
ENSG00000135930 (EIF4E2)
eukaryotic translation initiation factor 4E family member 2 		ENST00000258416 (EIF4E2-001) 232550052-232569210 protein_coding
ENST00000409098 (EIF4E2-002) 232550683-232583644 protein_coding
ENST00000409167 (EIF4E2-005) 232550689-232568020 protein_coding
ENST00000409322 (EIF4E2-014) 232550692-232569178 protein_coding
ENST00000409394 (EIF4E2-008) 232550704-232580956 protein_coding
ENST00000409495 (EIF4E2-007) 232550689-232567527 protein_coding
ENST00000409514 (EIF4E2-003) 232550683-232583642 protein_coding
ENST00000444113 (EIF4E2-013) 232574074-232581332 protein_coding
ENST00000454501 (EIF4E2-010) 232550807-232567205 protein_coding
ENST00000459714 (EIF4E2-012) 232573721-232581062 processed_transcript
ENST00000463074 (EIF4E2-006) 232550674-232556596 retained_intron
ENST00000478878 (EIF4E2-011) 232566944-232569833 processed_transcript
ENST00000479834 (EIF4E2-009) 232550806-232557648 processed_transcript
ENST00000498242 (EIF4E2-004) 232550691-232558824 retained_intron
ENSG00000221944 (TIGD1)
tigger transposable element derived 1 		ENST00000408957 (TIGD1-001) 232547968-232550592 protein_coding
ENSG00000244384 (RN7SL359P)
RNA, 7SL, cytoplasmic 359, pseudogene 		ENST00000473502 (RN7SL359P-201) 232649849-232650136 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003HV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026254-ENSMUSG00000026255 CGP 10090 1:87213914-87310839
GeneTranscriptPositionBiotype
ENSMUSG00000026255 (Efhd1)
EF hand domain containing 1 		ENSMUST00000027472 (Efhd1-001) 87264363-87310839 protein_coding
ENSMUST00000118687 (Efhd1-002) 87264363-87310836 nonsense_mediated_decay
ENSMUST00000150831 (Efhd1-003) 87309226-87309742 processed_transcript
ENSMUSG00000088318 (Gm26187)
predicted gene, 26187 		ENSMUST00000157693 (Gm26187-201) 87251148-87251248 snRNA
ENSMUSG00000089821 (Efhd1os)
EF hand domain containing 1, opposite strand 		ENSMUST00000138844 (Efhd1os-001) 87264481-87265174 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HV_0001ENSG00000115468ENST00000264059ENST00000409613ENST00000409708ENST00000410095ENST00000427698ENST00000442845ENST00000611312ENSG00000135930ENST00000258416ENST00000409098ENST00000409167ENST00000409322ENST00000409394ENST00000409495ENST00000409514ENST00000444113ENST00000454501ENST00000459714ENST00000463074ENST00000478878ENST00000479834ENST00000498242ENSG00000221944ENST00000408957ENSG00000244384ENST00000473502CIL_0003HV_0002ENSMUSG00000026255ENSMUST00000027472ENSMUST00000118687ENSMUST00000150831ENSMUSG00000088318ENSMUST00000157693ENSMUSG00000089821ENSMUST00000138844
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003HV_0001ENSG00000115468ENST00000264059ENST00000409613ENST00000410095ENST00000442845ENST00000611312ENSG00000135930ENST00000258416ENST00000409098ENST00000409322ENST00000409495ENST00000409514ENST00000454501ENST00000463074ENST00000498242ENSG00000221944ENST00000408957ENSG00000244384ENST00000473502CIL_0003HV_0002ENSMUSG00000026255ENSMUST00000027472ENSMUST00000118687ENSMUST00000150831ENSMUSG00000088318ENSMUST00000157693ENSMUSG00000089821ENSMUST00000138844
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115468 ENST00000264059 14.741±0.00 1.940±0.00 5.606±0.00 21.755±18.50 5.005±3.97 8.750±0.00 3.204±2.52 28.826±21.32 8.427±0.00 5.548±0.00 6.504±3.78 4.182±3.19 43.681±20.30 12.944±5.20
ENST00000409613 N/A N/A N/A N/A N/A 0.514±0.00 N/A N/A 1.481±0.00 N/A 2.008±0.00 0.257±0.00 N/A N/A
ENST00000409708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000410095 N/A N/A N/A N/A 0.686±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442845 N/A N/A N/A N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A N/A N/A
ENST00000611312 36.691±0.00 13.705±0.00 4.660±0.00 62.225±54.10 23.571±0.00 18.316±0.00 6.885±0.00 37.265±34.25 17.303±0.00 3.111±1.69 7.800±0.00 20.826±14.56 128.926±41.39 40.088±0.00
ENSG00000135930 ENST00000258416 N/A N/A N/A N/A N/A 3.064±0.00 N/A 2.650±0.00 4.666±3.06 N/A N/A 10.444±5.87 15.841±2.45 13.189±0.00
ENST00000409098 N/A 3.679±0.00 2.821±0.00 N/A N/A N/A 2.248±0.00 2.650±0.58 2.362±1.31 2.633±0.20 N/A 2.428±0.59 N/A 6.622±2.03
ENST00000409167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409322 15.167±0.00 12.385±0.00 6.364±0.00 N/A 11.484±4.56 15.363±10.59 1.191±0.00 10.470±0.00 14.719±11.71 14.762±7.13 4.651±0.00 18.173±8.26 34.305±9.67 N/A
ENST00000409394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409495 10.093±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.409±0.00 26.193±0.00 N/A
ENST00000409514 4.773±0.00 2.430±0.00 N/A 6.638±1.97 4.723±2.87 4.222±3.19 2.383±1.72 8.860±0.00 1.225±0.00 2.161±0.00 2.704±1.08 4.714±0.14 2.787±0.00 5.953±0.00
ENST00000444113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.032±0.00 N/A N/A 25.669±7.65
ENST00000459714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.694±0.00 N/A
ENST00000478878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498242 N/A N/A N/A N/A N/A N/A 1.957±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000221944 ENST00000408957 N/A 3.208±0.00 1.909±0.00 2.731±0.08 1.395±0.00 1.940±0.00 0.444±0.00 3.921±0.00 1.126±0.00 N/A N/A 2.913±0.60 N/A N/A
ENSG00000244384 ENST00000473502 1.294±0.00 1.384±0.00 N/A 0.520±0.00 0.665±0.00 0.252±0.00 0.086±0.00 0.828±0.00 0.307±0.06 N/A N/A 0.273±0.00 N/A 1.394±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026255 ENSMUST00000027472 8.342±1.91 117.485±8.82 1.988±0.18 1.950±1.57 14.256±4.70 0.808±0.26 2.611±0.29 57.666±7.97 0.090±0.05 0.694±0.26 1.366±0.31 43.116±18.17 2.218±2.54 159.595±66.93
ENSMUST00000118687 N/A N/A N/A 0.149±0.00 N/A 0.242±0.10 0.513±0.08 N/A 0.024±0.03 0.148±0.00 N/A 6.173±0.00 0.486±0.00 N/A
ENSMUST00000150831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.967±0.94 N/A
ENSMUSG00000088318 ENSMUST00000157693 N/A N/A N/A 22.330±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.984±0.00
ENSMUSG00000089821 ENSMUST00000138844 N/A 2168.463±1177.21 N/A N/A 35.105±3.95 2.849±0.75 N/A 99.822±0.00 0.357±0.00 1.374±0.00 N/A 173.036±43.33 N/A N/A

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