C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079964-ENSDARG00000042282 CGP 7955 9:3393859-3482938
GeneTranscriptPositionBiotype
ENSDARG00000042282 (itga6a)
integrin, alpha 6a 		ENSDART00000082153 (itga6a-002) 3426193-3479640 protein_coding
ENSDART00000114168 (itga6a-001) 3426112-3482938 protein_coding
ENSDARG00000079964 (dlx2a)
distal-less homeobox gene 2a 		ENSDART00000111386 (dlx2a-201) 3393859-3397177 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003IK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115844-ENSG00000091409 CGP 9606 2:172099439-172506282
GeneTranscriptPositionBiotype
ENSG00000091409 (ITGA6)
integrin, alpha 6 		ENST00000264107 (ITGA6-001) 172427555-172506230 protein_coding
ENST00000409080 (ITGA6-004) 172427789-172506282 protein_coding
ENST00000409532 (ITGA6-003) 172427418-172504534 protein_coding
ENST00000412899 (ITGA6-002) 172427354-172474977 protein_coding
ENST00000416789 (ITGA6-006) 172487962-172504328 protein_coding
ENST00000442250 (ITGA6-010) 172427789-172504252 protein_coding
ENST00000458358 (ITGA6-011) 172427789-172504252 protein_coding
ENST00000469534 (ITGA6-007) 172488005-172489928 retained_intron
ENST00000470259 (ITGA6-008) 172490792-172491254 retained_intron
ENST00000475302 (ITGA6-009) 172490929-172501818 retained_intron
ENST00000497107 (ITGA6-005) 172468998-172474112 retained_intron
ENSG00000115844 (DLX2)
distal-less homeobox 2 		ENST00000234198 (DLX2-001) 172099439-172102900 protein_coding
ENST00000466293 (DLX2-002) 172100557-172102900 protein_coding
ENSG00000232555 (AC104088.1)
 ENST00000445613 (AC104088.1-001) 172315287-172323737 lincRNA
ENSG00000236651 (DLX2-AS1)
DLX2 antisense RNA 1 (head to head) 		ENST00000448117 (DLX2-AS1-001) 172103006-172109982 lincRNA
ENSG00000278924 (RP11-227L6.1)
 ENST00000623218 (RP11-227L6.1-001) 172423807-172424173 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003IK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023391-ENSMUSG00000027111 CGP 10090 2:71543408-71858416
GeneTranscriptPositionBiotype
ENSMUSG00000023391 (Dlx2)
distal-less homeobox 2 		ENSMUST00000024159 (Dlx2-001) 71543408-71546754 protein_coding
ENSMUST00000134249 (Dlx2-002) 71544866-71545950 retained_intron
ENSMUSG00000027111 (Itga6)
integrin alpha 6 		ENSMUST00000028522 (Itga6-001) 71786978-71856758 protein_coding
ENSMUST00000112101 (Itga6-002) 71786940-71856771 protein_coding
ENSMUST00000126787 (Itga6-005) 71849029-71858416 processed_transcript
ENSMUST00000133124 (Itga6-007) 71745616-71820254 processed_transcript
ENSMUST00000139760 (Itga6-009) 71849437-71852635 processed_transcript
ENSMUST00000152009 (Itga6-003) 71786929-71820943 processed_transcript
ENSMUST00000155249 (Itga6-004) 71826762-71854951 protein_coding
ENSMUST00000155596 (Itga6-008) 71838081-71838914 processed_transcript
ENSMUSG00000064263 (Gm1631)
predicted gene 1631 		ENSMUST00000079720 (Gm1631-001) 71719417-71730966 lincRNA
ENSMUSG00000081878 (Gm13739)
predicted gene 13739 		ENSMUST00000118020 (Gm13739-001) 71762238-71762767 processed_pseudogene
ENSMUSG00000084794 (Gm13662)
predicted gene 13662 		ENSMUST00000157059 (Gm13662-001) 71749925-71759801 processed_transcript
ENSMUSG00000087570 (Gm13647)
predicted gene 13647 		ENSMUST00000154654 (Gm13647-001) 71737815-71745397 lincRNA
ENSMUSG00000097235 (Gm17250)
predicted gene, 17250 		ENSMUST00000180494 (Gm17250-201) 71748075-71750162 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IK_0001ENSDARG00000042282ENSDART00000082153ENSDART00000114168ENSDARG00000079964ENSDART00000111386CIL_0003IK_0002ENSG00000091409ENST00000264107ENST00000409080ENST00000409532ENST00000412899ENST00000416789ENST00000442250ENST00000458358ENST00000469534ENST00000470259ENST00000475302ENST00000497107ENSG00000115844ENST00000234198ENST00000466293ENSG00000232555ENST00000445613ENSG00000236651ENST00000448117ENSG00000278924ENST00000623218CIL_0003IK_0003ENSMUSG00000023391ENSMUST00000024159ENSMUST00000134249ENSMUSG00000027111ENSMUST00000028522ENSMUST00000112101ENSMUST00000126787ENSMUST00000133124ENSMUST00000139760ENSMUST00000152009ENSMUST00000155249ENSMUST00000155596ENSMUSG00000064263ENSMUST00000079720ENSMUSG00000081878ENSMUST00000118020ENSMUSG00000084794ENSMUST00000157059ENSMUSG00000087570ENSMUST00000154654ENSMUSG00000097235ENSMUST00000180494
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IK_0001ENSDARG00000042282ENSDART00000082153ENSDART00000114168ENSDARG00000079964ENSDART00000111386CIL_0003IK_0002ENSG00000091409ENST00000264107ENST00000409080ENST00000409532ENST00000416789ENST00000442250ENST00000458358ENST00000497107ENSG00000115844ENST00000234198ENST00000466293ENSG00000232555ENST00000445613ENSG00000236651ENST00000448117ENSG00000278924ENST00000623218CIL_0003IK_0003ENSMUSG00000023391ENSMUST00000024159ENSMUST00000134249ENSMUSG00000027111ENSMUST00000028522ENSMUST00000112101ENSMUST00000126787ENSMUST00000139760ENSMUST00000152009ENSMUSG00000064263ENSMUST00000079720ENSMUSG00000081878ENSMUST00000118020ENSMUSG00000084794ENSMUST00000157059ENSMUSG00000087570ENSMUST00000154654ENSMUSG00000097235ENSMUST00000180494
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042282 ENSDART00000082153 N/A N/A N/A 1.933±0.00 N/A N/A 0.125±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A
ENSDART00000114168 N/A N/A N/A 1.440±0.37 N/A N/A 0.548±0.11 0.754±0.47 N/A N/A 0.370±0.00 N/A N/A N/A
ENSDARG00000079964 ENSDART00000111386 N/A N/A N/A 2.581±1.73 N/A N/A 0.180±0.00 0.250±0.06 N/A N/A 0.217±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091409 ENST00000264107 27.218±0.00 9.432±0.00 2.911±0.00 1.964±0.03 11.576±6.60 12.148±0.00 6.287±0.33 N/A 4.945±0.00 6.052±3.19 3.094±0.00 15.475±9.91 17.055±10.60 5.009±0.00
ENST00000409080 32.748±0.00 5.360±0.00 3.957±0.00 6.485±0.00 8.966±0.61 15.044±1.97 5.023±0.00 12.187±0.00 2.484±0.61 7.892±0.14 N/A 8.250±4.29 22.508±6.64 13.498±0.00
ENST00000409532 N/A N/A N/A N/A N/A N/A N/A 1.563±0.00 N/A N/A 3.302±0.00 12.666±0.00 N/A N/A
ENST00000412899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000416789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.834±0.00
ENST00000442250 N/A N/A N/A N/A N/A N/A N/A 1.944±0.00 N/A 9.116±0.00 N/A N/A N/A N/A
ENST00000458358 N/A N/A N/A N/A 6.247±0.00 13.765±0.00 6.330±0.00 N/A 8.484±0.00 N/A N/A N/A N/A N/A
ENST00000469534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497107 N/A N/A 44.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000115844 ENST00000234198 0.019±0.00 N/A N/A 0.828±0.00 0.017±0.00 0.009±0.00 N/A N/A N/A N/A N/A 0.065±0.03 N/A 0.141±0.10
ENST00000466293 N/A N/A N/A 0.088±0.00 0.005±0.00 N/A 0.019±0.00 N/A N/A N/A N/A N/A 0.043±0.00 0.102±0.00
ENSG00000232555 ENST00000445613 N/A 0.081±0.00 N/A 0.263±0.22 0.130±0.00 0.161±0.00 N/A N/A N/A N/A N/A 0.215±0.00 0.164±0.01 3.460±0.00
ENSG00000236651 ENST00000448117 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A 0.139±0.12
ENSG00000278924 ENST00000623218 0.056±0.00 0.158±0.00 N/A 0.080±0.00 0.383±0.33 N/A N/A N/A N/A 0.039±0.00 N/A 1.495±0.00 0.294±0.00 0.121±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023391 ENSMUST00000024159 N/A 0.158±0.04 N/A 8.431±5.58 0.026±0.01 0.083±0.04 0.011±0.00 0.009±0.00 0.027±0.02 0.014±0.00 N/A 0.016±0.00 0.060±0.03 0.031±0.02
ENSMUST00000134249 N/A N/A 0.020±0.00 0.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A
ENSMUSG00000027111 ENSMUST00000028522 15.421±4.73 6.005±1.31 7.299±0.00 1.495±0.00 6.907±2.62 N/A 5.562±0.62 3.431±0.00 1.202±0.74 9.518±1.25 0.712±0.00 6.862±3.71 12.963±5.08 1.053±0.32
ENSMUST00000112101 5.939±0.00 9.778±2.20 N/A 2.435±1.38 3.957±0.12 6.967±0.39 2.942±0.36 11.527±2.85 0.521±0.18 6.664±1.86 1.362±0.00 2.224±0.00 4.514±1.20 0.539±0.01
ENSMUST00000126787 26.890±7.17 15.734±2.50 9.280±4.61 5.223±3.22 15.015±3.97 15.618±4.87 10.646±1.25 27.029±3.63 2.363±1.13 26.863±3.43 2.053±0.39 11.949±4.80 13.102±2.81 1.666±0.50
ENSMUST00000133124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139760 N/A 56.941±9.11 N/A N/A N/A N/A 86.979±43.81 N/A N/A N/A N/A 61.163±33.12 N/A 7.054±0.84
ENSMUST00000152009 N/A 28.780±11.04 N/A N/A 11.911±1.27 28.245±4.82 N/A N/A 0.633±0.00 13.310±0.00 N/A 20.098±2.85 N/A N/A
ENSMUST00000155249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064263 ENSMUST00000079720 0.062±0.01 N/A 0.014±0.00 0.013±0.00 0.090±0.00 0.104±0.01 0.107±0.01 N/A 0.014±0.00 0.063±0.00 N/A 0.291±0.12 0.036±0.02 0.058±0.00
ENSMUSG00000081878 ENSMUST00000118020 N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084794 ENSMUST00000157059 N/A N/A N/A N/A N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000087570 ENSMUST00000154654 0.108±0.03 N/A N/A 0.115±0.02 0.119±0.04 N/A N/A N/A N/A N/A N/A 0.083±0.02 0.153±0.13 N/A
ENSMUSG00000097235 ENSMUST00000180494 0.176±0.00 N/A N/A 0.121±0.07 0.065±0.00 N/A N/A N/A N/A N/A 0.040±0.00 0.033±0.00 0.067±0.04 N/A

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