C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003JP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019877-ENSDARG00000038863 CGP 7955 17:41158892-41423508
GeneTranscriptPositionBiotype
ENSDARG00000019877 (rbks)
ribokinase 		ENSDART00000030622 (rbks-001) 41158892-41240863 protein_coding
ENSDARG00000038863 (bre)
brain and reproductive organ-expressed protein 		ENSDART00000056742 (bre-201) 41241058-41423508 protein_coding
ENSDART00000137091 (bre-001) 41241034-41418997 protein_coding
ENSDART00000143714 (bre-002) 41241050-41251595 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003JP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171174-ENSG00000158019 CGP 9606 2:27781364-28338901
GeneTranscriptPositionBiotype
ENSG00000171174 (RBKS)
ribokinase 		ENST00000302188 (RBKS-001) 27781364-27891098 protein_coding
ENST00000449378 (RBKS-002) 27781573-27890366 nonsense_mediated_decay
ENST00000453412 (RBKS-003) 27858501-27890681 nonsense_mediated_decay
ENST00000458185 (RBKS-004) 27809687-27843161 protein_coding
ENST00000612015 (RBKS-201) 27781523-27781916 protein_coding
ENSG00000223522 (AC093690.1)
 ENST00000418963 (AC093690.1-001) 28307691-28310459 antisense
ENSG00000225991 (RP11-731I19.1)
 ENST00000423483 (RP11-731I19.1-001) 28308161-28308570 processed_pseudogene
ENSG00000243147 (MRPL33)
mitochondrial ribosomal protein L33 		ENST00000296102 (MRPL33-001) 27771717-27779741 protein_coding
ENST00000379666 (MRPL33-002) 27771717-27779734 protein_coding
ENST00000448427 (MRPL33-006) 27771739-27988087 nonsense_mediated_decay
ENST00000472192 (MRPL33-003) 27771744-27772855 retained_intron
ENST00000476552 (MRPL33-005) 27772190-27779697 processed_transcript
ENST00000483992 (MRPL33-004) 27771975-27779731 processed_transcript
ENSG00000265321 (MIR4263)
microRNA 4263 		ENST00000584745 (MIR4263-201) 27996367-27996449 miRNA
ENSG00000270528 (RP11-674I16.2)
 ENST00000603137 (RP11-674I16.2-001) 28015777-28016482 processed_pseudogene
ENSG00000270846 (RP11-674I16.1)
 ENST00000603006 (RP11-674I16.1-001) 27896116-27897195 processed_pseudogene
ENSG00000277035 (uc_338)
TUC338 		ENST00000621563 (uc_338.1-219) 28134408-28134585 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003JP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029136-ENSMUSG00000052139 CGP 10090 5:31624439-32084962
GeneTranscriptPositionBiotype
ENSMUSG00000029136 (Rbks)
ribokinase 		ENSMUST00000031018 (Rbks-001) 31624439-31697627 protein_coding
ENSMUST00000123679 (Rbks-002) 31624439-31640538 processed_transcript
ENSMUST00000128047 (Rbks-003) 31660045-31686093 processed_transcript
ENSMUSG00000029142 (Mrpl33)
mitochondrial ribosomal protein L33 		ENSMUST00000031024 (Mrpl33-001) 31613939-31622644 protein_coding
ENSMUST00000128529 (Mrpl33-009) 31613956-31641792 processed_transcript
ENSMUST00000133516 (Mrpl33-011) 31654625-31658130 processed_transcript
ENSMUST00000137652 (Mrpl33-008) 31598733-31622644 processed_transcript
ENSMUST00000138996 (Mrpl33-010) 31613972-31701952 processed_transcript
ENSMUST00000142345 (Mrpl33-006) 31596935-31654861 processed_transcript
ENSMUST00000142394 (Mrpl33-007) 31596938-31701972 processed_transcript
ENSMUST00000145264 (Mrpl33-003) 31613972-31654861 processed_transcript
ENSMUST00000152261 (Mrpl33-004) 31613985-31664384 nonsense_mediated_decay
ENSMUST00000154286 (Mrpl33-005) 31655496-31663431 processed_transcript
ENSMUST00000155497 (Mrpl33-002) 31614013-31622642 retained_intron
ENSMUSG00000088514 (Gm24436)
predicted gene, 24436 		ENSMUST00000157889 (Gm24436-201) 31870046-31870347 misc_RNA
ENSMUSG00000099301 (Mir3473e)
microRNA 3473e 		ENSMUST00000183932 (Mir3473e-201) 31667231-31667340 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JP_0001ENSDARG00000019877ENSDART00000030622ENSDARG00000038863ENSDART00000056742ENSDART00000137091ENSDART00000143714CIL_0003JP_0002ENSG00000171174ENST00000302188ENST00000449378ENST00000453412ENST00000458185ENST00000612015ENSG00000223522ENST00000418963ENSG00000225991ENST00000423483ENSG00000243147ENST00000296102ENST00000379666ENST00000448427ENST00000472192ENST00000476552ENST00000483992ENSG00000265321ENST00000584745ENSG00000270528ENST00000603137ENSG00000270846ENST00000603006ENSG00000277035ENST00000621563CIL_0003JP_0003ENSMUSG00000029136ENSMUST00000031018ENSMUST00000123679ENSMUST00000128047ENSMUSG00000029142ENSMUST00000031024ENSMUST00000128529ENSMUST00000133516ENSMUST00000137652ENSMUST00000138996ENSMUST00000142345ENSMUST00000142394ENSMUST00000145264ENSMUST00000152261ENSMUST00000154286ENSMUST00000155497ENSMUSG00000088514ENSMUST00000157889ENSMUSG00000099301ENSMUST00000183932
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003JP_0001ENSDARG00000019877ENSDART00000030622ENSDARG00000038863ENSDART00000056742ENSDART00000137091CIL_0003JP_0002ENSG00000171174ENST00000302188ENSG00000223522ENST00000418963ENSG00000225991ENST00000423483ENSG00000243147ENST00000296102ENST00000379666ENSG00000265321ENST00000584745ENSG00000270528ENST00000603137ENSG00000270846ENST00000603006ENSG00000277035ENST00000621563CIL_0003JP_0003ENSMUSG00000029136ENSMUST00000031018ENSMUST00000123679ENSMUSG00000029142ENSMUST00000031024ENSMUST00000137652ENSMUST00000155497ENSMUSG00000088514ENSMUST00000157889ENSMUSG00000099301ENSMUST00000183932
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019877 ENSDART00000030622 N/A N/A N/A 1.096±1.04 N/A N/A 2.968±0.62 4.227±0.61 0.839±0.00 N/A 2.179±0.00 N/A N/A N/A
ENSDARG00000038863 ENSDART00000056742 N/A N/A N/A 4.712±3.93 N/A N/A 4.764±1.60 4.601±2.44 0.306±0.00 N/A 3.180±0.00 N/A N/A N/A
ENSDART00000137091 N/A N/A N/A 6.275±1.39 N/A N/A 2.919±0.32 8.237±0.00 0.678±0.00 N/A 1.028±0.00 N/A N/A N/A
ENSDART00000143714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171174 ENST00000302188 N/A N/A 1.824±0.00 N/A N/A N/A N/A 5.974±2.96 13.227±0.00 11.332±0.00 N/A N/A N/A 7.441±0.00
ENST00000449378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223522 ENST00000418963 0.106±0.00 0.481±0.00 0.630±0.00 0.164±0.05 0.128±0.09 0.790±0.00 0.048±0.04 0.227±0.04 0.323±0.26 0.311±0.16 0.168±0.00 0.219±0.23 0.015±0.00 0.130±0.01
ENSG00000225991 ENST00000423483 0.113±0.00 0.657±0.00 3.205±0.00 1.761±0.00 1.080±1.04 0.843±0.69 0.564±0.00 0.285±0.00 1.780±0.00 0.779±0.02 0.416±0.00 1.222±0.78 0.108±0.00 0.194±0.09
ENSG00000243147 ENST00000296102 14.881±0.00 26.156±0.00 5.971±0.00 12.887±4.02 22.396±0.00 18.269±12.92 33.900±26.26 27.796±19.38 26.046±0.00 56.493±0.00 30.180±13.10 33.747±16.47 31.463±2.80 32.326±2.81
ENST00000379666 N/A N/A N/A 22.382±4.23 13.648±0.00 29.939±0.00 65.482±50.03 N/A 4.927±0.00 54.158±0.00 12.882±0.00 63.816±11.03 43.592±8.30 41.746±4.72
ENST00000448427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000265321 ENST00000584745 N/A N/A N/A N/A N/A N/A N/A 4.293±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000270528 ENST00000603137 N/A 0.047±0.00 0.090±0.00 0.114±0.00 0.087±0.00 0.213±0.13 N/A N/A N/A N/A N/A 0.027±0.01 0.020±0.00 N/A
ENSG00000270846 ENST00000603006 N/A N/A N/A 0.089±0.00 0.030±0.00 N/A 0.039±0.00 0.150±0.09 0.105±0.07 N/A N/A 0.129±0.10 0.042±0.00 N/A
ENSG00000277035 ENST00000621563 N/A N/A 1.294±0.00 N/A 0.505±0.00 N/A 0.453±0.00 0.479±0.00 N/A N/A N/A N/A N/A 0.250±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029136 ENSMUST00000031018 2.385±0.65 3.693±0.85 1.752±0.27 0.824±0.54 1.877±0.80 5.820±0.40 1.088±0.36 9.074±0.59 8.912±1.80 2.566±0.30 1.151±0.25 1.750±0.61 4.499±1.51 8.873±3.06
ENSMUST00000123679 N/A N/A N/A 0.255±0.00 0.923±0.00 N/A 0.178±0.00 N/A N/A 0.572±0.00 0.570±0.00 0.985±0.47 N/A N/A
ENSMUST00000128047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029142 ENSMUST00000031024 N/A N/A 89.458±21.72 31.779±6.17 N/A N/A 35.355±3.83 N/A 74.927±17.45 N/A 95.388±8.82 78.582±11.87 35.698±11.64 50.989±0.00
ENSMUST00000128529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137652 N/A N/A N/A 70.036±0.00 N/A N/A N/A N/A N/A N/A N/A 143.248±0.36 64.748±22.40 149.375±0.00
ENSMUST00000138996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155497 6.871±0.46 23.558±2.95 6.951±2.34 3.313±0.12 6.508±0.29 3.180±0.35 2.709±0.04 N/A 2.946±0.61 6.587±1.05 N/A 7.078±1.97 2.196±0.61 N/A
ENSMUSG00000088514 ENSMUST00000157889 N/A N/A N/A N/A 0.693±0.00 0.407±0.01 N/A N/A 0.269±0.02 N/A N/A 1.060±0.15 N/A N/A
ENSMUSG00000099301 ENSMUST00000183932 2417.160±0.00 N/A N/A N/A N/A N/A 1639.395±123.27 N/A N/A 1180.758±216.18 N/A N/A 10.282±0.00 1585.550±0.00

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