C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003KC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165288-ENSG00000198157 CGP 9606 X:80670854-81201942
GeneTranscriptPositionBiotype
ENSG00000073905 (VDAC1P1)
voltage-dependent anion channel 1 pseudogene 1 		ENST00000439229 (VDAC1P1-001) 80929500-80930347 processed_pseudogene
ENSG00000165288 (BRWD3)
bromodomain and WD repeat domain containing 3 		ENST00000373275 (BRWD3-001) 80670854-80809688 protein_coding
ENST00000473691 (BRWD3-003) 80677245-80722573 processed_transcript
ENST00000478415 (BRWD3-002) 80743707-80809683 processed_transcript
ENST00000487313 (BRWD3-005) 80733158-80734145 processed_transcript
ENST00000497335 (BRWD3-004) 80716883-80719570 processed_transcript
ENSG00000198157 (HMGN5)
high mobility group nucleosome binding domain 5 		ENST00000358130 (HMGN5-001) 81113701-81201942 protein_coding
ENST00000373250 (HMGN5-007) 81114985-81121638 protein_coding
ENST00000430960 (HMGN5-006) 81115054-81121683 protein_coding
ENST00000436386 (HMGN5-002) 81115192-81201913 protein_coding
ENST00000447319 (HMGN5-004) 81114835-81121688 protein_coding
ENST00000451455 (HMGN5-003) 81116204-81201886 protein_coding
ENST00000491275 (HMGN5-005) 81115111-81121688 processed_transcript
ENSG00000225715 (RP11-325E14.5)
 ENST00000415494 (RP11-325E14.5-001) 80709928-80710705 processed_pseudogene
CIL_0003KC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000063663-ENSMUSG00000031245 CGP 10090 X:108737016-109013404
GeneTranscriptPositionBiotype
ENSMUSG00000031245 (Hmgn5)
high-mobility group nucleosome binding domain 5 		ENSMUST00000033597 (Hmgn5-001) 109004534-109013404 protein_coding
ENSMUSG00000063663 (Brwd3)
bromodomain and WD repeat domain containing 3 		ENSMUST00000041866 (Brwd3-002) 108742568-108834372 nonsense_mediated_decay
ENSMUST00000101283 (Brwd3-004) 108820897-108834346 protein_coding
ENSMUST00000134434 (Brwd3-005) 108803352-108834340 retained_intron
ENSMUST00000144521 (Brwd3-003) 108742568-108834372 nonsense_mediated_decay
ENSMUST00000150434 (Brwd3-001) 108737016-108834348 protein_coding
ENSMUSG00000077652 (Gm23322)
predicted gene, 23322 		ENSMUST00000104464 (Gm23322-201) 109009681-109009847 snRNA
ENSMUSG00000081748 (Gm14870)
predicted gene 14870 		ENSMUST00000118414 (Gm14870-001) 108893496-108893651 processed_pseudogene
ENSMUSG00000081793 (5730416F02Rik)
RIKEN cDNA 5730416F02 gene 		ENSMUST00000120648 (5730416F02Rik-001) 109001485-109002296 processed_pseudogene
ENSMUSG00000086629 (2810403D21Rik)
RIKEN cDNA 2810403D21 gene 		ENSMUST00000123040 (2810403D21Rik-007) 108834578-108974398 processed_transcript
ENSMUST00000124329 (2810403D21Rik-001) 108903386-108974906 processed_transcript
ENSMUST00000131640 (2810403D21Rik-003) 108834657-108886683 processed_transcript
ENSMUST00000144421 (2810403D21Rik-006) 108834502-108886690 processed_transcript
ENSMUST00000145250 (2810403D21Rik-004) 108834664-108839502 retained_intron
ENSMUST00000151166 (2810403D21Rik-008) 108834695-108874974 processed_transcript
ENSMUST00000152089 (2810403D21Rik-005) 108834679-108874770 processed_transcript
ENSMUST00000153212 (2810403D21Rik-002) 108834478-108886896 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KC_0001ENSG00000073905ENST00000439229ENSG00000165288ENST00000373275ENST00000473691ENST00000478415ENST00000487313ENST00000497335ENSG00000198157ENST00000358130ENST00000373250ENST00000430960ENST00000436386ENST00000447319ENST00000451455ENST00000491275ENSG00000225715ENST00000415494CIL_0003KC_0002ENSMUSG00000031245ENSMUST00000033597ENSMUSG00000063663ENSMUST00000041866ENSMUST00000101283ENSMUST00000134434ENSMUST00000144521ENSMUST00000150434ENSMUSG00000077652ENSMUST00000104464ENSMUSG00000081748ENSMUST00000118414ENSMUSG00000081793ENSMUST00000120648ENSMUSG00000086629ENSMUST00000123040ENSMUST00000124329ENSMUST00000131640ENSMUST00000144421ENSMUST00000145250ENSMUST00000151166ENSMUST00000152089ENSMUST00000153212
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003KC_0001ENSG00000073905ENST00000439229ENSG00000165288ENST00000373275ENST00000473691ENSG00000198157ENST00000358130ENST00000373250ENST00000430960ENST00000436386ENST00000447319ENST00000451455ENST00000491275ENSG00000225715ENST00000415494CIL_0003KC_0002ENSMUSG00000031245ENSMUST00000033597ENSMUSG00000063663ENSMUST00000041866ENSMUST00000134434ENSMUST00000144521ENSMUST00000150434ENSMUSG00000077652ENSMUST00000104464ENSMUSG00000081748ENSMUST00000118414ENSMUSG00000081793ENSMUST00000120648ENSMUSG00000086629ENSMUST00000123040ENSMUST00000124329ENSMUST00000131640ENSMUST00000144421ENSMUST00000145250ENSMUST00000151166ENSMUST00000152089ENSMUST00000153212
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000073905 ENST00000439229 0.017±0.00 0.018±0.00 N/A N/A 0.055±0.00 N/A N/A 0.037±0.00 0.034±0.02 0.017±0.00 0.216±0.00 0.060±0.00 0.062±0.00 N/A
ENSG00000165288 ENST00000373275 1.060±0.00 0.683±0.00 0.570±0.00 0.553±0.00 0.800±0.00 1.661±0.71 0.354±0.22 1.276±0.00 0.787±0.31 2.120±0.41 N/A 1.192±0.53 0.554±0.18 2.404±1.27
ENST00000473691 0.732±0.00 N/A 1.365±0.00 1.360±0.00 1.849±0.00 2.797±0.00 N/A 1.074±0.00 3.171±0.00 1.278±0.00 N/A N/A 0.467±0.00 N/A
ENST00000478415 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198157 ENST00000358130 N/A N/A N/A 0.767±0.00 N/A 1.789±1.70 N/A N/A 0.059±0.00 0.023±0.00 N/A 0.960±0.00 0.096±0.01 8.663±3.16
ENST00000373250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.448±0.00 N/A N/A N/A
ENST00000430960 N/A N/A 0.383±0.00 N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A 0.843±0.59 0.120±0.00 9.084±0.00
ENST00000436386 N/A N/A N/A N/A N/A 0.690±0.00 0.106±0.00 N/A 0.130±0.00 N/A N/A N/A 0.249±0.00 N/A
ENST00000447319 1.835±0.00 2.749±0.00 N/A N/A 3.498±0.00 4.540±0.00 0.629±0.00 N/A N/A 1.845±0.00 N/A N/A 0.070±0.00 2.659±0.00
ENST00000451455 N/A N/A N/A N/A 0.485±0.00 N/A N/A 0.515±0.00 N/A N/A N/A 0.369±0.00 0.274±0.07 N/A
ENST00000491275 N/A N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225715 ENST00000415494 N/A N/A N/A 0.346±0.32 N/A 0.832±0.82 N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.037±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031245 ENSMUST00000033597 1.651±0.47 1.274±0.54 5.845±1.76 4.914±0.04 0.722±0.41 1.248±0.45 1.596±0.22 2.924±0.67 10.249±7.60 1.518±0.20 2.599±0.29 4.662±4.93 91.058±93.62 7.895±13.56
ENSMUSG00000063663 ENSMUST00000041866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.261±0.08 0.423±0.00
ENSMUST00000101283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134434 N/A N/A N/A N/A N/A 0.826±0.00 N/A 0.436±0.00 N/A N/A N/A 0.435±0.00 N/A N/A
ENSMUST00000144521 N/A 0.079±0.00 N/A 0.856±0.00 0.212±0.00 0.146±0.00 N/A N/A 0.143±0.03 N/A N/A 2.599±0.00 7.307±0.12 0.813±0.89
ENSMUST00000150434 0.856±0.43 0.430±0.15 0.457±0.15 1.329±0.83 0.949±0.20 0.566±0.15 0.349±0.10 0.497±0.10 0.677±0.16 0.995±0.14 0.103±0.02 0.960±0.28 2.695±0.98 0.764±0.04
ENSMUSG00000077652 ENSMUST00000104464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.740±0.00 N/A
ENSMUSG00000081748 ENSMUST00000118414 N/A N/A N/A 1.703±0.00 N/A N/A N/A 178.845±0.00 N/A 295.771±0.00 1.900±0.00 3.271±0.15 2.391±1.61 N/A
ENSMUSG00000081793 ENSMUST00000120648 0.056±0.00 N/A 0.012±0.00 0.061±0.00 0.095±0.03 0.209±0.06 0.155±0.07 0.059±0.02 0.015±0.00 0.055±0.00 0.087±0.01 N/A 0.299±0.11 0.093±0.07
ENSMUSG00000086629 ENSMUST00000123040 0.576±0.00 0.466±0.00 0.825±0.00 N/A 0.348±0.07 0.340±0.00 N/A 0.632±0.28 N/A 0.410±0.00 N/A N/A N/A 0.102±0.00
ENSMUST00000124329 0.081±0.01 0.190±0.00 0.230±0.02 0.213±0.00 0.167±0.07 0.080±0.00 0.068±0.00 0.093±0.03 0.134±0.08 0.088±0.00 0.201±0.02 0.213±0.06 0.637±0.49 0.064±0.05
ENSMUST00000131640 0.611±0.00 0.734±0.27 1.268±0.08 1.110±0.33 0.400±0.15 N/A 0.378±0.13 0.449±0.02 1.126±0.61 1.078±0.00 0.820±0.42 1.777±1.13 0.897±0.06 N/A
ENSMUST00000144421 N/A 0.318±0.00 N/A N/A 0.574±0.28 0.231±0.00 N/A 0.385±0.14 0.281±0.10 0.307±0.14 N/A 0.716±0.00 0.851±0.00 0.229±0.14
ENSMUST00000145250 0.059±0.01 0.086±0.03 0.103±0.00 0.049±0.01 0.069±0.01 0.061±0.02 0.030±0.01 0.069±0.02 0.055±0.03 0.035±0.02 N/A 0.130±0.04 0.072±0.02 0.029±0.01
ENSMUST00000151166 0.192±0.13 0.246±0.00 0.402±0.05 0.251±0.00 N/A N/A 0.218±0.04 0.208±0.05 0.338±0.11 0.143±0.00 0.199±0.04 N/A 0.466±0.08 0.052±0.00
ENSMUST00000152089 0.246±0.00 N/A N/A N/A N/A 0.285±0.00 N/A N/A 0.186±0.06 N/A N/A 0.750±0.03 0.573±0.18 N/A
ENSMUST00000153212 0.173±0.02 N/A 0.314±0.00 0.358±0.00 0.137±0.00 N/A 0.229±0.07 0.317±0.12 0.378±0.21 0.194±0.02 0.185±0.03 0.586±0.22 0.386±0.00 0.077±0.02

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