C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003LR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062178-ENSDARG00000056621 CGP 7955 18:21955341-22074083
GeneTranscriptPositionBiotype
ENSDARG00000056621 (ctcf)
CCCTC-binding factor (zinc finger protein) 		ENSDART00000079139 (ctcf-001) 22066703-22074083 protein_coding
ENSDART00000151919 (ctcf-003) 22067795-22069071 protein_coding
ENSDART00000151922 (ctcf-002) 22066740-22069254 protein_coding
ENSDARG00000062178 (fam65a)
family with sequence similarity 65, member A 		ENSDART00000089549 (fam65a-001) 21955341-22064109 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003LR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000039523-ENSG00000102974 CGP 9606 16:67518418-67639183
GeneTranscriptPositionBiotype
ENSG00000039523 (FAM65A)
family with sequence similarity 65, member A 		ENST00000042381 (FAM65A-001) 67528870-67546786 protein_coding
ENST00000379312 (FAM65A-002) 67528817-67546786 protein_coding
ENST00000422602 (FAM65A-201) 67529637-67546785 protein_coding
ENST00000428437 (FAM65A-006) 67537454-67546788 protein_coding
ENST00000540839 (FAM65A-003) 67528881-67546786 protein_coding
ENST00000561534 (FAM65A-024) 67538965-67541578 retained_intron
ENST00000562116 (FAM65A-004) 67518418-67538471 protein_coding
ENST00000562755 (FAM65A-007) 67528288-67539021 protein_coding
ENST00000564616 (FAM65A-018) 67542999-67543826 retained_intron
ENST00000565176 (FAM65A-023) 67531548-67540094 protein_coding
ENST00000565190 (FAM65A-020) 67545372-67546067 retained_intron
ENST00000565679 (FAM65A-019) 67545537-67546005 retained_intron
ENST00000566522 (FAM65A-010) 67528867-67540704 processed_transcript
ENST00000566559 (FAM65A-005) 67538078-67542668 protein_coding
ENST00000566730 (FAM65A-014) 67540125-67541577 retained_intron
ENST00000566815 (FAM65A-013) 67538464-67541578 nonsense_mediated_decay
ENST00000566907 (FAM65A-008) 67529347-67538544 protein_coding
ENST00000566920 (FAM65A-009) 67529791-67538996 protein_coding
ENST00000568959 (FAM65A-022) 67544394-67545797 protein_coding
ENST00000569179 (FAM65A-021) 67540353-67541713 protein_coding
ENST00000569253 (FAM65A-011) 67537473-67542665 protein_coding
ENST00000569474 (FAM65A-015) 67539865-67541758 retained_intron
ENST00000569733 (FAM65A-017) 67541347-67546786 retained_intron
ENSG00000102974 (CTCF)
CCCTC-binding factor (zinc finger protein) 		ENST00000264010 (CTCF-001) 67562407-67639183 protein_coding
ENST00000401394 (CTCF-002) 67562407-67639183 protein_coding
ENST00000566078 (CTCF-003) 67562538-67612146 retained_intron
ENSG00000237718 (AC009095.4)
 ENST00000388909 (AC009095.4-001) 67614381-67615342 antisense
ENSG00000259804 (CTD-2012K14.7)
 ENST00000562846 (CTD-2012K14.7-001) 67561411-67562309 antisense
ENSG00000261386 (CTD-2012K14.6)
 ENST00000565929 (CTD-2012K14.6-001) 67549219-67549733 lincRNA
ENST00000605277 (CTD-2012K14.6-002) 67549214-67563958 lincRNA
ENSG00000280214 (CTD-2012K14.5)
 ENST00000623147 (CTD-2012K14.5-001) 67550815-67552935 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0003LR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038604-ENSMUSG00000005698 CGP 10090 8:105605229-105682922
GeneTranscriptPositionBiotype
ENSMUSG00000005698 (Ctcf)
CCCTC-binding factor 		ENSMUST00000005841 (Ctcf-001) 105636579-105682922 protein_coding
ENSMUST00000128510 (Ctcf-003) 105636935-105664134 processed_transcript
ENSMUST00000129388 (Ctcf-004) 105637066-105663851 processed_transcript
ENSMUST00000132679 (Ctcf-002) 105636568-105681647 processed_transcript
ENSMUST00000137735 (Ctcf-005) 105676011-105679567 processed_transcript
ENSMUST00000156436 (Ctcf-006) 105676011-105680617 retained_intron
ENSMUSG00000038604 (Fam65a)
family with sequence similarity 65, member A 		ENSMUST00000043531 (Fam65a-201) 105605229-105622194 protein_coding
ENSMUSG00000080021 (Gm5915)
predicted pseudogene 5915 		ENSMUST00000116136 (Gm5915-001) 105660334-105660787 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LR_0001ENSDARG00000056621ENSDART00000079139ENSDART00000151919ENSDART00000151922ENSDARG00000062178ENSDART00000089549CIL_0003LR_0002ENSG00000039523ENST00000042381ENST00000379312ENST00000422602ENST00000428437ENST00000540839ENST00000561534ENST00000562116ENST00000562755ENST00000564616ENST00000565176ENST00000565190ENST00000565679ENST00000566522ENST00000566559ENST00000566730ENST00000566815ENST00000566907ENST00000566920ENST00000568959ENST00000569179ENST00000569253ENST00000569474ENST00000569733ENSG00000102974ENST00000264010ENST00000401394ENST00000566078ENSG00000237718ENST00000388909ENSG00000259804ENST00000562846ENSG00000261386ENST00000565929ENST00000605277ENSG00000280214ENST00000623147CIL_0003LR_0003ENSMUSG00000005698ENSMUST00000005841ENSMUST00000128510ENSMUST00000129388ENSMUST00000132679ENSMUST00000137735ENSMUST00000156436ENSMUSG00000038604ENSMUST00000043531ENSMUSG00000080021ENSMUST00000116136
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003LR_0001ENSDARG00000056621ENSDART00000079139ENSDARG00000062178ENSDART00000089549CIL_0003LR_0002ENSG00000039523ENST00000042381ENST00000379312ENST00000428437ENST00000561534ENST00000565176ENST00000565190ENST00000566522ENST00000566559ENST00000566815ENST00000568959ENST00000569253ENSG00000102974ENST00000264010ENST00000401394ENST00000566078ENSG00000237718ENST00000388909ENSG00000259804ENST00000562846ENSG00000261386ENST00000565929ENST00000605277ENSG00000280214ENST00000623147CIL_0003LR_0003ENSMUSG00000005698ENSMUST00000005841ENSMUST00000128510ENSMUST00000129388ENSMUST00000132679ENSMUST00000137735ENSMUST00000156436ENSMUSG00000038604ENSMUST00000043531ENSMUSG00000080021ENSMUST00000116136
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056621 ENSDART00000079139 N/A N/A N/A 23.202±3.93 N/A N/A 7.426±1.77 8.744±1.86 1.373±0.00 N/A 5.256±0.00 N/A N/A N/A
ENSDART00000151919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000151922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062178 ENSDART00000089549 N/A N/A N/A 11.492±0.00 N/A N/A 13.985±0.00 9.172±0.00 0.511±0.00 N/A 2.308±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000039523 ENST00000042381 10.304±0.00 12.614±0.00 2.335±0.00 13.031±0.00 6.886±0.00 7.075±0.00 9.886±0.00 15.697±0.00 2.331±0.23 14.533±0.00 9.426±8.95 13.231±6.50 11.048±4.31 5.829±3.44
ENST00000379312 N/A N/A N/A N/A N/A 0.385±0.00 2.393±1.64 N/A N/A N/A N/A 0.570±0.00 N/A N/A
ENST00000422602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428437 11.977±0.00 12.646±0.00 N/A N/A 5.302±0.00 4.261±0.00 3.539±0.00 N/A 1.631±0.00 6.636±5.77 N/A 5.671±3.46 12.053±1.48 3.873±0.00
ENST00000540839 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.665±0.00 N/A N/A N/A
ENST00000562116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.930±0.00 N/A N/A
ENST00000565190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.897±0.00 N/A N/A
ENST00000565679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566522 N/A N/A N/A N/A 8.519±0.00 N/A N/A N/A N/A 6.927±0.00 N/A 8.953±6.67 26.562±0.00 11.217±0.00
ENST00000566559 N/A N/A N/A N/A 1.973±0.00 0.975±0.00 N/A N/A 1.718±0.00 N/A 0.482±0.00 N/A N/A N/A
ENST00000566730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566815 N/A N/A N/A N/A N/A N/A 1.399±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000566907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.127±0.00 39.406±0.00 16.468±0.00
ENST00000569179 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569253 N/A N/A 4.290±0.00 13.307±0.00 N/A N/A 1.340±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000569474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000102974 ENST00000264010 10.008±0.00 11.076±0.00 1.609±0.00 6.291±3.21 6.010±2.73 7.691±4.10 4.460±3.73 5.577±3.62 3.431±0.13 6.045±1.70 5.370±4.28 10.583±9.00 7.619±0.55 7.662±2.98
ENST00000401394 N/A 4.485±0.00 N/A N/A 1.811±0.00 3.370±0.00 N/A 5.260±0.00 1.030±0.00 1.626±0.22 2.912±0.00 5.528±0.55 4.789±2.12 2.877±0.52
ENST00000566078 N/A N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000237718 ENST00000388909 0.288±0.00 0.970±0.00 N/A 0.218±0.00 0.323±0.14 0.151±0.00 0.452±0.00 0.194±0.00 0.056±0.00 0.112±0.00 N/A 0.216±0.04 0.123±0.00 0.665±0.51
ENSG00000259804 ENST00000562846 N/A 0.173±0.00 N/A 0.277±0.00 N/A 0.140±0.00 0.086±0.00 0.123±0.00 N/A N/A N/A 0.392±0.23 0.087±0.00 0.550±0.16
ENSG00000261386 ENST00000565929 N/A 0.522±0.00 0.361±0.00 0.384±0.17 0.307±0.20 0.487±0.00 0.097±0.00 0.300±0.08 0.137±0.11 N/A N/A 0.442±0.35 0.134±0.00 0.130±0.00
ENST00000605277 N/A 0.497±0.00 N/A 0.186±0.00 0.315±0.28 0.678±0.00 0.119±0.00 N/A 0.395±0.00 0.655±0.56 N/A 0.140±0.00 N/A 0.068±0.02
ENSG00000280214 ENST00000623147 0.191±0.00 1.008±0.00 0.203±0.00 0.317±0.20 0.270±0.21 0.305±0.09 0.132±0.11 0.251±0.00 0.168±0.04 0.326±0.18 0.131±0.04 0.206±0.12 0.070±0.04 0.446±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005698 ENSMUST00000005841 4.593±2.83 2.918±0.70 8.186±0.72 14.198±9.13 3.396±1.34 2.584±0.78 2.628±0.15 3.574±1.62 6.970±5.53 6.583±1.60 4.136±2.72 4.923±3.04 8.399±0.67 1.895±0.50
ENSMUST00000128510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.030±0.00
ENSMUST00000129388 N/A 1.982±0.62 N/A N/A N/A 2.181±0.11 N/A N/A N/A N/A N/A 2.529±0.64 N/A N/A
ENSMUST00000132679 1.828±0.32 2.466±0.44 3.561±0.00 4.967±0.00 1.977±0.20 3.782±0.90 1.749±0.10 3.067±0.72 3.862±1.64 3.811±0.59 N/A 4.058±1.90 5.528±2.32 1.262±0.00
ENSMUST00000137735 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.111±0.00
ENSMUST00000156436 N/A N/A N/A 21.647±0.00 N/A N/A N/A N/A N/A N/A N/A 51.008±0.00 31.885±20.80 7.514±0.00
ENSMUSG00000038604 ENSMUST00000043531 14.226±1.08 12.364±1.81 7.686±3.05 17.343±7.28 10.776±2.53 9.700±1.90 10.527±2.71 17.961±1.66 3.213±1.03 30.490±3.09 5.363±0.79 10.324±2.26 31.617±18.56 1.904±0.59
ENSMUSG00000080021 ENSMUST00000116136 2.569±0.73 1.076±0.42 1.072±0.22 0.803±0.37 1.721±0.29 2.777±2.12 2.156±0.44 4.402±2.62 1.617±1.27 5.641±1.57 0.164±0.01 2.760±2.38 1.274±0.55 1.113±0.59

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