C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003M4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165669-ENSG00000119973 CGP 9606 10:118297930-118595699
GeneTranscriptPositionBiotype
ENSG00000119973 (PRLHR)
prolactin releasing hormone receptor 		ENST00000239032 (PRLHR-001) 118589989-118595699 protein_coding
ENSG00000165669 (FAM204A)
family with sequence similarity 204, member A 		ENST00000369170 (FAM204A-007) 118335114-118342240 protein_coding
ENST00000369172 (FAM204A-006) 118310746-118342320 protein_coding
ENST00000369183 (FAM204A-005) 118297930-118342320 protein_coding
ENST00000452252 (FAM204A-009) 118308606-118309580 processed_transcript
ENST00000467890 (FAM204A-002) 118310414-118311486 retained_intron
ENST00000469758 (FAM204A-008) 118310720-118342315 processed_transcript
ENST00000470476 (FAM204A-004) 118310720-118342315 nonsense_mediated_decay
ENST00000487269 (FAM204A-010) 118336025-118342328 retained_intron
ENST00000490048 (FAM204A-011) 118335258-118341746 retained_intron
ENST00000491416 (FAM204A-001) 118310636-118326349 processed_transcript
ENSG00000232139 (LINC00867)
long intergenic non-protein coding RNA 867 		ENST00000411666 (LINC00867-002) 118357545-118359203 lincRNA
ENST00000415417 (LINC00867-004) 118357559-118365103 lincRNA
ENST00000445161 (LINC00867-001) 118357108-118359203 lincRNA
ENST00000453236 (LINC00867-003) 118357755-118365103 lincRNA
ENSG00000234309 (SLC25A18P1)
solute carrier family 25 (glutamate carrier), member 18 pseudogene 1 		ENST00000449385 (SLC25A18P1-001) 118572871-118573620 processed_pseudogene
CIL_0003M4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057858-ENSMUSG00000045052 CGP 10090 19:60198586-60468304
GeneTranscriptPositionBiotype
ENSMUSG00000043623 (4933412A08Rik)
RIKEN cDNA 4933412A08 gene 		ENSMUST00000061046 (4933412A08Rik-201) 60226334-60227678 pseudogene
ENSMUSG00000045052 (Prlhr)
prolactin releasing hormone receptor 		ENSMUST00000051277 (Prlhr-201) 60466733-60468304 protein_coding
ENSMUSG00000057858 (Fam204a)
family with sequence similarity 204, member A 		ENSMUST00000065286 (Fam204a-201) 60198586-60226697 protein_coding
ENSMUSG00000099678 (RP23-159D6.1)
predicted gene 28351 		ENSMUST00000186261 (RP23-159D6.1-001) 60241853-60243581 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003M4_0001ENSG00000119973ENST00000239032ENSG00000165669ENST00000369170ENST00000369172ENST00000369183ENST00000452252ENST00000467890ENST00000469758ENST00000470476ENST00000487269ENST00000490048ENST00000491416ENSG00000232139ENST00000411666ENST00000415417ENST00000445161ENST00000453236ENSG00000234309ENST00000449385CIL_0003M4_0002ENSMUSG00000043623ENSMUST00000061046ENSMUSG00000045052ENSMUST00000051277ENSMUSG00000057858ENSMUST00000065286ENSMUSG00000099678ENSMUST00000186261
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003M4_0001ENSG00000119973ENST00000239032ENSG00000165669ENST00000369170ENST00000369172ENST00000369183ENST00000467890ENST00000469758ENST00000487269ENST00000490048ENST00000491416ENSG00000232139ENST00000411666ENST00000415417ENST00000445161ENST00000453236ENSG00000234309ENST00000449385CIL_0003M4_0002ENSMUSG00000043623ENSMUST00000061046ENSMUSG00000045052ENSMUST00000051277ENSMUSG00000057858ENSMUST00000065286ENSMUSG00000099678ENSMUST00000186261
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119973 ENST00000239032 0.033±0.00 0.048±0.00 N/A 0.218±0.00 0.045±0.00 0.042±0.00 0.026±0.00 0.046±0.00 0.042±0.00 0.011±0.00 N/A 0.015±0.01 N/A 0.031±0.01
ENSG00000165669 ENST00000369170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.456±0.00 3.783±0.00 16.962±0.00
ENST00000369172 19.394±0.00 13.785±0.00 3.219±0.00 13.942±2.31 10.665±1.56 7.315±2.48 6.360±2.40 7.791±0.00 8.041±2.01 6.673±0.45 5.330±3.20 9.915±3.35 4.817±0.35 21.298±3.94
ENST00000369183 1.266±0.00 1.404±0.00 0.455±0.00 1.047±0.44 0.907±0.40 0.522±0.07 0.480±0.18 0.546±0.06 0.644±0.24 0.551±0.04 0.824±0.63 1.005±0.19 0.278±0.06 1.101±0.31
ENST00000452252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467890 9.981±0.00 5.025±0.00 N/A 6.491±0.00 6.230±0.00 3.565±0.00 3.047±0.00 4.387±0.00 N/A 2.672±0.00 5.756±0.00 4.359±0.00 1.718±0.20 9.328±0.00
ENST00000469758 N/A N/A N/A N/A 4.429±0.00 2.847±0.00 3.177±0.00 N/A N/A 3.966±0.00 N/A N/A 0.886±0.00 N/A
ENST00000470476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487269 N/A N/A 7.727±0.00 N/A 9.076±0.00 9.386±0.00 5.467±0.00 7.695±0.00 10.493±0.00 N/A 7.633±0.00 12.758±0.00 N/A N/A
ENST00000490048 N/A N/A 3.436±0.00 N/A N/A N/A N/A N/A N/A 5.983±0.00 N/A N/A N/A N/A
ENST00000491416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.197±0.00 N/A N/A N/A
ENSG00000232139 ENST00000411666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.935±0.00
ENST00000415417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.264±0.00
ENST00000445161 N/A N/A N/A N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A
ENST00000453236 N/A N/A N/A N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234309 ENST00000449385 N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000043623 ENSMUST00000061046 1.703±0.70 4.027±1.46 N/A N/A 2.714±1.95 3.439±0.47 0.729±0.13 1.106±0.82 0.485±0.10 3.612±0.94 N/A 4.296±2.17 N/A 1.179±0.44
ENSMUSG00000045052 ENSMUST00000051277 N/A 0.552±0.08 N/A 0.331±0.20 0.020±0.00 0.131±0.06 0.031±0.01 0.029±0.02 0.009±0.01 N/A N/A 0.045±0.00 0.053±0.04 0.054±0.02
ENSMUSG00000057858 ENSMUST00000065286 1.636±0.18 3.105±1.44 4.219±0.37 4.874±1.34 2.032±1.25 1.497±0.85 0.971±0.13 1.080±0.36 1.626±1.19 1.502±0.38 3.902±0.31 4.126±2.75 2.158±0.63 1.959±0.76
ENSMUSG00000099678 ENSMUST00000186261 N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.03

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