C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003N2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196678-ENSG00000196678 CGP 9606 16:20780193-20900349
GeneTranscriptPositionBiotype
ENSG00000005187 (ACSM3)
acyl-CoA synthetase medium-chain family member 3 		ENST00000289416 (ACSM3-001) 20763702-20797581 protein_coding
ENST00000440284 (ACSM3-002) 20764040-20786314 protein_coding
ENST00000501740 (ACSM3-013) 20674510-20755608 processed_transcript
ENST00000561499 (ACSM3-008) 20783264-20786152 processed_transcript
ENST00000561584 (ACSM3-014) 20674608-20770191 protein_coding
ENST00000561795 (ACSM3-004) 20764683-20777417 protein_coding
ENST00000562251 (ACSM3-003) 20770160-20797156 protein_coding
ENST00000563914 (ACSM3-009) 20779881-20786316 protein_coding
ENST00000564701 (ACSM3-011) 20749418-20770109 protein_coding
ENST00000567006 (ACSM3-007) 20796238-20797153 retained_intron
ENST00000567387 (ACSM3-005) 20783251-20796992 processed_transcript
ENST00000567711 (ACSM3-010) 20796078-20797156 processed_transcript
ENST00000568235 (ACSM3-012) 20610243-20775920 protein_coding
ENST00000569141 (ACSM3-006) 20785050-20796929 protein_coding
ENST00000614721 (ACSM3-015) 20674531-20682176 processed_transcript
ENSG00000005189 (AC004381.6)
Putative RNA exonuclease NEF-sp 		ENST00000261377 (AC004381.6-001) 20806499-20849668 protein_coding
ENST00000348433 (AC004381.6-003) 20806521-20849665 protein_coding
ENST00000561474 (AC004381.6-020) 20828524-20845076 protein_coding
ENST00000563045 (AC004381.6-018) 20825562-20827186 retained_intron
ENST00000563068 (AC004381.6-008) 20806708-20814992 protein_coding
ENST00000563617 (AC004381.6-013) 20807157-20825871 protein_coding
ENST00000564200 (AC004381.6-017) 20821037-20828535 processed_transcript
ENST00000564274 (AC004381.6-004) 20806698-20849480 protein_coding
ENST00000565340 (AC004381.6-011) 20806624-20832199 protein_coding
ENST00000566276 (AC004381.6-012) 20806552-20827186 protein_coding
ENST00000566518 (AC004381.6-015) 20806663-20828535 nonsense_mediated_decay
ENST00000566993 (AC004381.6-002) 20806496-20849639 nonsense_mediated_decay
ENST00000567297 (AC004381.6-016) 20806757-20825906 processed_transcript
ENST00000568046 (AC004381.6-007) 20806445-20814982 protein_coding
ENST00000568334 (AC004381.6-019) 20839853-20844662 retained_intron
ENST00000568476 (AC004381.6-014) 20806617-20825897 processed_transcript
ENST00000568501 (AC004381.6-009) 20806527-20821834 protein_coding
ENST00000568647 (AC004381.6-010) 20806657-20821771 protein_coding
ENST00000568894 (AC004381.6-006) 20806429-20821802 protein_coding
ENSG00000102897 (LYRM1)
LYR motif containing 1 		ENST00000219168 (LYRM1-201) 20900753-20925004 protein_coding
ENST00000396052 (LYRM1-001) 20901104-20925006 protein_coding
ENST00000412082 (LYRM1-002) 20900235-20925004 protein_coding
ENST00000439021 (LYRM1-202) 20900235-20925004 protein_coding
ENST00000562740 (LYRM1-005) 20900666-20924381 protein_coding
ENST00000564457 (LYRM1-007) 20899868-20900491 processed_transcript
ENST00000567165 (LYRM1-003) 20900411-20921463 nonsense_mediated_decay
ENST00000567954 (LYRM1-006) 20900799-20924116 protein_coding
ENST00000568663 (LYRM1-008) 20899902-20924263 protein_coding
ENST00000568820 (LYRM1-004) 20900491-20922007 nonsense_mediated_decay
ENST00000569023 (LYRM1-009) 20900450-20924116 protein_coding
ENSG00000188215 (DCUN1D3)
DCN1, defective in cullin neddylation 1, domain containing 3 		ENST00000324344 (DCUN1D3-001) 20854925-20900384 protein_coding
ENST00000563934 (DCUN1D3-002) 20858996-20868980 protein_coding
ENSG00000275908 (U4atac)
U4atac minor spliceosomal RNA 		ENST00000618345 (U4atac.1-201) 20823443-20823537 snRNA
CIL_0003N2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030929-ENSMUSG00000030924 CGP 10090 7:119768679-119848943
GeneTranscriptPositionBiotype
ENSMUSG00000030924 (2610020H08Rik)
RIKEN cDNA 2610020H08 gene 		ENSMUST00000033218 (2610020H08Rik-001) 119794006-119848943 protein_coding
ENSMUST00000084644 (2610020H08Rik-201) 119794130-119848938 protein_coding
ENSMUST00000106520 (2610020H08Rik-004) 119794010-119848943 protein_coding
ENSMUST00000133758 (2610020H08Rik-002) 119794130-119848938 nonsense_mediated_decay
ENSMUST00000137015 (2610020H08Rik-003) 119794151-119820856 retained_intron
ENSMUST00000138689 (2610020H08Rik-007) 119834357-119844039 processed_transcript
ENSMUST00000149132 (2610020H08Rik-005) 119824100-119832780 processed_transcript
ENSMUST00000151248 (2610020H08Rik-008) 119844206-119845436 retained_intron
ENSMUST00000155938 (2610020H08Rik-006) 119825551-119828010 retained_intron
ENSMUSG00000030929 (Eri2)
exoribonuclease 2 		ENSMUST00000033224 (Eri2-002) 119783827-119793982 nonsense_mediated_decay
ENSMUST00000063902 (Eri2-004) 119771938-119793967 protein_coding
ENSMUST00000106523 (Eri2-005) 119768679-119793967 protein_coding
ENSMUST00000125595 (Eri2-003) 119782573-119793975 retained_intron
ENSMUST00000133926 (Eri2-006) 119786494-119787952 retained_intron
ENSMUST00000139192 (Eri2-007) 119783844-119793959 nonsense_mediated_decay
ENSMUST00000150844 (Eri2-001) 119784896-119794058 protein_coding
ENSMUSG00000030935 (Acsm3)
acyl-CoA synthetase medium-chain family member 3 		ENSMUST00000063770 (Acsm3-001) 119760924-119784891 protein_coding
ENSMUST00000106526 (Acsm3-004) 119766371-119784896 protein_coding
ENSMUST00000106527 (Acsm3-002) 119760923-119784893 protein_coding
ENSMUST00000106528 (Acsm3-201) 119760923-119784889 protein_coding
ENSMUST00000106529 (Acsm3-003) 119760924-119787513 protein_coding
ENSMUST00000149598 (Acsm3-006) 119777046-119781013 retained_intron
ENSMUST00000149766 (Acsm3-005) 119774544-119779229 retained_intron
ENSMUST00000154828 (Acsm3-007) 119780736-119781054 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003N2_0001ENSG00000005187ENST00000289416ENST00000440284ENST00000567387ENST00000614721ENSG00000005189ENST00000261377ENST00000348433ENST00000564274ENST00000566993ENSG00000102897ENST00000219168ENST00000412082ENST00000439021ENST00000567954ENSG00000188215ENST00000324344ENST00000563934ENSG00000275908ENST00000618345CIL_0003N2_0002ENSMUSG00000030924ENSMUST00000033218ENSMUST00000084644ENSMUST00000106520ENSMUST00000137015ENSMUST00000138689ENSMUSG00000030929ENSMUST00000033224ENSMUST00000125595ENSMUST00000139192ENSMUST00000150844ENSMUSG00000030935ENSMUST00000063770ENSMUST00000106526ENSMUST00000106527ENSMUST00000149598ENSMUST00000149766
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005187 ENST00000289416 N/A N/A 3.659±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440284 N/A N/A N/A N/A N/A N/A N/A 14.545±2.48 N/A N/A N/A N/A N/A N/A
ENST00000501740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561584 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567387 N/A N/A N/A N/A N/A N/A N/A 16.110±0.00 N/A N/A N/A N/A N/A N/A
ENST00000567711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614721 N/A N/A N/A N/A N/A N/A 1.442±0.00 N/A N/A N/A N/A 27.717±10.10 N/A N/A
ENSG00000005189 ENST00000261377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.882±0.00
ENST00000348433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 57.610±18.96
ENST00000561474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 71.247±0.00
ENST00000565340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566276 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 105.570±0.00
ENST00000567297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000102897 ENST00000219168 N/A N/A N/A 7.956±0.00 N/A N/A 2.885±0.00 N/A N/A N/A 2.586±0.00 N/A N/A N/A
ENST00000396052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000412082 N/A N/A N/A 10.292±0.00 N/A N/A N/A N/A N/A N/A 4.404±0.00 11.510±0.00 17.495±0.00 N/A
ENST00000439021 10.855±0.00 13.465±0.00 N/A N/A 17.920±0.00 14.823±0.00 21.370±0.00 14.002±4.89 32.121±0.00 9.647±0.00 1.368±0.00 19.378±0.00 N/A N/A
ENST00000562740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567954 N/A N/A N/A 10.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188215 ENST00000324344 4.828±0.00 3.497±0.00 N/A 2.089±0.00 9.111±0.00 N/A 3.310±0.00 3.500±0.85 4.043±0.73 2.029±0.44 0.966±0.00 6.863±2.84 3.289±0.69 N/A
ENST00000563934 8.808±0.00 N/A N/A N/A 14.304±0.00 N/A N/A N/A 7.245±0.00 N/A 1.461±0.00 N/A N/A N/A
ENSG00000275908 ENST00000618345 N/A N/A N/A N/A N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030924 ENSMUST00000033218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 1.543±0.00 6.839±0.00
ENSMUST00000084644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.17 N/A 5.645±0.00
ENSMUST00000106520 N/A N/A 1.763±0.00 N/A N/A N/A N/A N/A N/A N/A 0.159±0.00 1.906±1.09 1.887±0.54 9.698±0.62
ENSMUST00000133758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.824±0.00 N/A N/A
ENSMUST00000138689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 470.162±0.00
ENSMUST00000149132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030929 ENSMUST00000033224 2.302±0.97 N/A 1.521±0.32 1.858±1.22 1.131±0.00 N/A 0.362±0.12 N/A 2.985±0.45 1.253±0.13 0.269±0.05 1.879±0.32 1.510±0.71 N/A
ENSMUST00000063902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125595 N/A 0.386±0.00 0.502±0.00 0.666±0.00 N/A N/A 0.100±0.00 N/A N/A N/A 0.070±0.00 0.582±0.29 N/A N/A
ENSMUST00000133926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139192 1.235±0.00 N/A 1.766±0.34 5.693±1.97 1.736±0.47 N/A 0.593±0.14 1.035±0.21 3.545±0.99 1.082±0.19 0.253±0.09 1.980±0.84 2.126±0.85 N/A
ENSMUST00000150844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 1.243±0.00 2.393±1.02 N/A
ENSMUSG00000030935 ENSMUST00000063770 2.431±0.69 1.657±0.61 N/A N/A 2.104±0.54 5.308±0.00 0.467±0.16 1.773±0.38 8.714±1.29 0.799±0.00 0.174±0.02 N/A N/A N/A
ENSMUST00000106526 N/A 3.782±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106527 2.451±0.73 3.611±0.77 N/A N/A 3.247±0.74 14.573±3.07 0.235±0.00 1.992±0.33 10.882±2.31 0.777±0.00 0.194±0.01 N/A N/A N/A
ENSMUST00000106528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.704±0.00 N/A
ENSMUST00000149766 N/A 1.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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