C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003N4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000091616-ENSDARG00000053459 CGP 7955 6:43849829-43975685
GeneTranscriptPositionBiotype
ENSDARG00000053459 (rybpb)
RING1 and YY1 binding protein b 		ENSDART00000075497 (rybpb-001) 43938009-43975685 protein_coding
ENSDARG00000091616 (prok2)
prokineticin 2 		ENSDART00000123341 (prok2-001) 43849829-43854113 protein_coding
ENSDARG00000097174 (si:rp71-15i6.2)
si:rp71-15i6.2 		ENSDART00000154838 (si:rp71-15i6.2-001) 43911011-43933830 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0003N4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163421-ENSG00000163602 CGP 9606 3:71771656-72446918
GeneTranscriptPositionBiotype
ENSG00000163421 (PROK2)
prokineticin 2 		ENST00000295619 (PROK2-002) 71772101-71785061 protein_coding
ENST00000353065 (PROK2-001) 71771656-71785206 protein_coding
ENSG00000163602 (RYBP)
RING1 and YY1 binding protein 		ENST00000477973 (RYBP-001) 72371825-72446918 protein_coding
ENSG00000212070 (AC112219.1)
 ENST00000390781 (AC112219.1-201) 72262322-72262428 miRNA
ENSG00000241163 (LINC00877)
long intergenic non-protein coding RNA 877 		ENST00000462492 (LINC00877-006) 72092429-72100869 lincRNA
ENST00000464271 (LINC00877-005) 72060933-72100455 lincRNA
ENST00000468646 (LINC00877-001) 72035300-72100427 lincRNA
ENST00000469218 (LINC00877-007) 72060797-72234244 lincRNA
ENST00000470712 (LINC00877-003) 72059822-72100112 lincRNA
ENST00000481148 (LINC00877-008) 72060841-72242565 lincRNA
ENST00000488545 (LINC00877-004) 72097728-72100957 lincRNA
ENST00000498432 (LINC00877-002) 72060764-72100303 lincRNA
ENST00000608654 (LINC00877-009) 72061061-72101074 lincRNA
ENSG00000242609 (RP11-398A8.1)
 ENST00000467189 (RP11-398A8.1-001) 72086888-72087725 processed_pseudogene
ENSG00000242618 (RP11-433A10.2)
 ENST00000491567 (RP11-433A10.2-001) 72202944-72209892 lincRNA
ENSG00000243083 (LINC00870)
long intergenic non-protein coding RNA 870 		ENST00000469178 (LINC00870-003) 72152759-72172099 lincRNA
ENST00000473713 (LINC00870-001) 72151257-72174332 lincRNA
ENST00000485404 (LINC00870-002) 72152893-72172250 lincRNA
ENSG00000244130 (UBE2Q2P9)
ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 9 		ENST00000490086 (UBE2Q2P9-001) 72006774-72006975 processed_pseudogene
ENSG00000260670 (RP11-447M4.1)
 ENST00000570082 (RP11-447M4.1-001) 72321051-72324027 lincRNA
ENSG00000272774 (RP11-433A10.3)
 ENST00000608390 (RP11-433A10.3-001) 72178279-72178810 lincRNA
ENSG00000276471 (RP11-398A8.5)
 ENST00000618391 (RP11-398A8.5-001) 72080564-72084641 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003N4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030069-ENSMUSG00000072872 CGP 10090 6:99711299-100287441
GeneTranscriptPositionBiotype
ENSMUSG00000030069 (Prok2)
prokineticin 2 		ENSMUST00000008273 (Prok2-201) 99711299-99726392 protein_coding
ENSMUST00000032152 (Prok2-202) 99711299-99726392 protein_coding
ENSMUST00000101120 (Prok2-203) 99711299-99726392 protein_coding
ENSMUSG00000072872 (Rybp)
RING1 and YY1 binding protein 		ENSMUST00000101118 (Rybp-201) 100228566-100287441 protein_coding
ENSMUSG00000084319 (Tpt1-ps3)
tumor protein, translationally-controlled, pseudogene 3 		ENSMUST00000121046 (Tpt1-ps3-001) 99877816-99878334 processed_pseudogene
ENSMUSG00000087946 (Gm24248)
predicted gene, 24248 		ENSMUST00000157321 (Gm24248-201) 99893226-99893547 misc_RNA
ENSMUSG00000097548 (Gm26748)
predicted gene, 26748 		ENSMUST00000180406 (Gm26748-201) 99725771-99732553 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003N4_0001ENSDARG00000053459ENSDART00000075497ENSDARG00000091616ENSDART00000123341ENSDARG00000097174ENSDART00000154838CIL_0003N4_0002ENSG00000163421ENST00000295619ENST00000353065ENSG00000163602ENST00000477973ENSG00000212070ENST00000390781ENSG00000241163ENST00000462492ENST00000464271ENST00000468646ENST00000469218ENST00000470712ENST00000481148ENST00000488545ENST00000498432ENST00000608654ENSG00000242609ENST00000467189ENSG00000242618ENST00000491567ENSG00000243083ENST00000469178ENST00000473713ENST00000485404ENSG00000244130ENST00000490086ENSG00000260670ENST00000570082ENSG00000272774ENST00000608390ENSG00000276471ENST00000618391CIL_0003N4_0003ENSMUSG00000030069ENSMUST00000008273ENSMUST00000032152ENSMUST00000101120ENSMUSG00000072872ENSMUST00000101118ENSMUSG00000084319ENSMUST00000121046ENSMUSG00000087946ENSMUST00000157321ENSMUSG00000097548ENSMUST00000180406
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003N4_0001ENSDARG00000053459ENSDART00000075497ENSDARG00000091616ENSDART00000123341ENSDARG00000097174ENSDART00000154838CIL_0003N4_0002ENSG00000163421ENST00000295619ENST00000353065ENSG00000163602ENST00000477973ENSG00000212070ENST00000390781ENSG00000241163ENST00000462492ENST00000468646ENST00000470712ENST00000481148ENST00000488545ENST00000608654ENSG00000242609ENST00000467189ENSG00000242618ENST00000491567ENSG00000243083ENST00000469178ENST00000473713ENST00000485404ENSG00000244130ENST00000490086ENSG00000260670ENST00000570082ENSG00000272774ENST00000608390ENSG00000276471ENST00000618391CIL_0003N4_0003ENSMUSG00000030069ENSMUST00000008273ENSMUST00000032152ENSMUST00000101120ENSMUSG00000072872ENSMUST00000101118ENSMUSG00000084319ENSMUST00000121046ENSMUSG00000087946ENSMUST00000157321ENSMUSG00000097548ENSMUST00000180406
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053459 ENSDART00000075497 N/A N/A N/A 11.270±2.84 N/A N/A 2.624±0.88 3.191±1.11 0.337±0.00 N/A 1.059±0.00 N/A N/A N/A
ENSDARG00000091616 ENSDART00000123341 N/A N/A N/A 0.526±0.50 N/A N/A N/A 0.286±0.14 N/A N/A N/A N/A N/A N/A
ENSDARG00000097174 ENSDART00000154838 N/A N/A N/A 0.046±0.00 N/A N/A N/A 0.416±0.08 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163421 ENST00000295619 N/A N/A N/A 0.154±0.00 N/A N/A 0.044±0.00 N/A N/A N/A 0.079±0.00 0.033±0.02 0.373±0.00 4.334±0.00
ENST00000353065 0.413±0.00 0.079±0.00 N/A 0.090±0.00 0.056±0.02 0.168±0.00 0.150±0.00 0.035±0.00 0.195±0.00 3.246±2.85 N/A 0.042±0.02 0.605±0.04 2.369±0.63
ENSG00000163602 ENST00000477973 4.892±0.00 3.864±0.00 1.098±0.00 3.299±2.51 3.572±0.00 4.114±3.29 1.619±1.19 2.946±1.96 2.441±0.57 7.097±4.20 0.941±0.73 4.588±3.15 6.781±1.79 7.603±1.37
ENSG00000212070 ENST00000390781 N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A 1.017±0.00 N/A N/A N/A
ENSG00000241163 ENST00000462492 N/A N/A N/A N/A N/A N/A N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A
ENST00000464271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468646 N/A 0.132±0.00 N/A 0.094±0.00 N/A 0.035±0.00 0.010±0.00 0.037±0.00 0.089±0.00 N/A N/A 0.090±0.08 0.116±0.05 0.784±0.00
ENST00000469218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470712 N/A N/A N/A 0.099±0.00 N/A N/A N/A 0.398±0.00 0.096±0.00 N/A N/A N/A N/A N/A
ENST00000481148 0.304±0.00 N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488545 0.120±0.00 N/A N/A 0.127±0.00 0.114±0.00 0.048±0.00 0.011±0.00 N/A N/A 0.111±0.00 N/A N/A 0.115±0.01 0.220±0.00
ENST00000498432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608654 N/A N/A N/A N/A N/A 0.742±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242609 ENST00000467189 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A 0.069±0.00 N/A
ENSG00000242618 ENST00000491567 N/A N/A 0.358±0.00 N/A 0.461±0.00 N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A 0.040±0.00
ENSG00000243083 ENST00000469178 N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473713 N/A N/A 0.161±0.00 N/A N/A 0.076±0.00 N/A 0.100±0.00 0.259±0.00 N/A N/A 0.088±0.07 0.032±0.00 0.063±0.04
ENST00000485404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.205±0.00
ENSG00000244130 ENST00000490086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.549±0.00 N/A
ENSG00000260670 ENST00000570082 0.005±0.00 0.019±0.00 N/A 0.035±0.00 0.005±0.00 0.004±0.00 0.009±0.00 0.005±0.00 0.004±0.00 0.012±0.00 N/A 0.008±0.00 N/A 0.021±0.02
ENSG00000272774 ENST00000608390 N/A N/A N/A 0.139±0.00 N/A N/A N/A N/A 0.272±0.00 0.056±0.00 N/A 0.095±0.00 N/A 0.029±0.00
ENSG00000276471 ENST00000618391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00 N/A 0.045±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030069 ENSMUST00000008273 N/A N/A N/A 0.064±0.04 N/A N/A N/A N/A 0.032±0.02 N/A N/A 0.161±0.14 0.010±0.01 N/A
ENSMUST00000032152 N/A N/A N/A N/A N/A N/A 0.011±0.00 0.069±0.04 N/A N/A N/A 0.375±0.27 N/A 0.427±0.00
ENSMUST00000101120 0.094±0.02 N/A N/A 0.034±0.00 N/A N/A 0.011±0.00 0.041±0.02 0.072±0.02 N/A N/A 0.333±0.00 N/A 13.806±5.98
ENSMUSG00000072872 ENSMUST00000101118 7.471±4.65 1.632±0.72 13.886±0.83 10.487±6.14 3.272±1.70 5.672±0.51 2.356±0.17 4.878±0.87 4.288±2.28 9.740±2.08 1.094±0.20 9.370±1.79 19.984±9.65 6.118±2.55
ENSMUSG00000084319 ENSMUST00000121046 72.512±29.92 15.963±2.56 24.447±19.39 28.420±21.85 23.455±8.02 22.719±2.98 26.290±2.05 27.292±4.76 35.405±22.86 20.206±4.10 23.203±7.86 112.821±67.68 7.545±9.72 6.484±3.39
ENSMUSG00000087946 ENSMUST00000157321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.09
ENSMUSG00000097548 ENSMUST00000180406 0.088±0.05 N/A 0.018±0.00 0.063±0.03 0.058±0.02 0.067±0.02 0.029±0.02 0.060±0.04 0.018±0.01 0.088±0.03 0.014±0.00 0.088±0.03 0.022±0.01 0.152±0.06

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