C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142330-ENSG00000178623 CGP 9606 2:240586716-240631259
GeneTranscriptPositionBiotype
ENSG00000142330 (CAPN10)
calpain 10 		ENST00000270361 (CAPN10-008) 240586871-240599084 nonsense_mediated_decay
ENST00000270364 (CAPN10-006) 240586772-240617705 protein_coding
ENST00000352879 (CAPN10-002) 240586871-240599084 protein_coding
ENST00000354082 (CAPN10-007) 240586871-240599084 protein_coding
ENST00000357048 (CAPN10-003) 240586871-240599084 nonsense_mediated_decay
ENST00000391983 (CAPN10-009) 240586871-240599109 nonsense_mediated_decay
ENST00000391984 (CAPN10-001) 240586716-240599109 protein_coding
ENST00000404753 (CAPN10-005) 240586739-240599104 protein_coding
ENST00000416591 (CAPN10-004) 240586871-240599084 nonsense_mediated_decay
ENST00000426297 (CAPN10-016) 240598024-240607520 nonsense_mediated_decay
ENST00000432084 (CAPN10-017) 240590992-240592878 protein_coding
ENST00000463653 (CAPN10-012) 240586734-240589810 retained_intron
ENST00000465943 (CAPN10-013) 240594241-240595103 retained_intron
ENST00000483602 (CAPN10-014) 240595146-240596702 retained_intron
ENST00000493058 (CAPN10-015) 240595234-240598399 retained_intron
ENST00000494738 (CAPN10-010) 240589884-240599103 retained_intron
ENSG00000178623 (GPR35)
G protein-coupled receptor 35 		ENST00000319838 (GPR35-002) 240605431-240631259 protein_coding
ENST00000403859 (GPR35-003) 240605445-240631170 protein_coding
ENST00000407714 (GPR35-004) 240625245-240630882 protein_coding
ENST00000430267 (GPR35-201) 240618943-240631258 protein_coding
ENST00000438013 (GPR35-001) 240627433-240631253 protein_coding
CIL_0003NA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026270-ENSMUSG00000026271 CGP 10090 1:92934376-92986391
GeneTranscriptPositionBiotype
ENSMUSG00000026270 (Capn10)
calpain 10 		ENSMUST00000027488 (Capn10-001) 92934376-92947941 protein_coding
ENSMUST00000117814 (Capn10-002) 92934766-92940972 protein_coding
ENSMUST00000128429 (Capn10-004) 92942704-92943744 retained_intron
ENSMUST00000136598 (Capn10-006) 92946885-92947590 retained_intron
ENSMUST00000152983 (Capn10-003) 92934833-92947929 nonsense_mediated_decay
ENSMUST00000153828 (Capn10-005) 92946553-92946955 processed_transcript
ENSMUST00000187342 (Capn10-007) 92940459-92945103 nonsense_mediated_decay
ENSMUSG00000026271 (Gpr35)
G protein-coupled receptor 35 		ENSMUST00000027489 (Gpr35-004) 92973122-92986253 protein_coding
ENSMUST00000064480 (Gpr35-002) 92975347-92985864 protein_coding
ENSMUST00000169198 (Gpr35-003) 92978922-92986391 protein_coding
ENSMUST00000185421 (Gpr35-006) 92950865-92982686 protein_coding
ENSMUST00000186298 (Gpr35-001) 92973122-92985044 protein_coding
ENSMUST00000189697 (Gpr35-005) 92956164-92983009 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NA_0001ENSG00000142330ENST00000270361ENST00000270364ENST00000352879ENST00000354082ENST00000357048ENST00000391983ENST00000391984ENST00000404753ENST00000416591ENST00000426297ENST00000432084ENST00000463653ENST00000465943ENST00000483602ENST00000493058ENST00000494738ENSG00000178623ENST00000319838ENST00000403859ENST00000407714ENST00000430267ENST00000438013CIL_0003NA_0002ENSMUSG00000026270ENSMUST00000027488ENSMUST00000117814ENSMUST00000128429ENSMUST00000136598ENSMUST00000152983ENSMUST00000153828ENSMUST00000187342ENSMUSG00000026271ENSMUST00000027489ENSMUST00000064480ENSMUST00000169198ENSMUST00000185421ENSMUST00000186298ENSMUST00000189697
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NA_0001ENSG00000142330ENST00000270361ENST00000352879ENST00000354082ENST00000391983ENST00000391984ENST00000404753ENST00000416591ENST00000426297ENST00000432084ENST00000463653ENST00000483602ENST00000494738ENSG00000178623ENST00000319838ENST00000403859ENST00000430267ENST00000438013CIL_0003NA_0002ENSMUSG00000026270ENSMUST00000027488ENSMUST00000117814ENSMUST00000152983ENSMUSG00000026271ENSMUST00000027489ENSMUST00000064480ENSMUST00000169198ENSMUST00000186298ENSMUST00000189697
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142330 ENST00000270361 1.528±0.00 N/A N/A 2.143±0.00 2.158±0.00 4.837±0.00 3.247±0.00 8.959±0.00 2.002±0.00 3.823±0.00 N/A 5.415±0.00 2.047±0.43 4.866±0.00
ENST00000270364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000352879 N/A N/A N/A 1.890±1.35 N/A N/A 3.223±0.00 N/A 1.851±0.00 4.416±0.00 0.902±0.00 N/A N/A N/A
ENST00000354082 N/A 3.064±0.00 N/A N/A N/A N/A N/A N/A N/A 0.561±0.00 N/A 2.458±0.00 1.166±0.33 N/A
ENST00000357048 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000391983 N/A N/A 0.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000391984 N/A 2.031±0.00 N/A 0.228±0.00 N/A N/A 1.463±0.00 N/A N/A N/A N/A 5.495±1.91 1.614±0.20 4.923±0.00
ENST00000404753 0.488±0.00 N/A 0.137±0.00 N/A 1.461±0.53 N/A 1.896±0.00 N/A 0.246±0.00 N/A 0.544±0.00 N/A N/A 2.733±0.00
ENST00000416591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.245±0.00 N/A 0.585±0.18 1.738±0.00
ENST00000426297 N/A N/A 0.793±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432084 N/A N/A N/A N/A N/A N/A N/A 0.672±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463653 N/A N/A N/A N/A N/A N/A N/A 1.385±0.00 0.433±0.00 N/A N/A N/A N/A N/A
ENST00000465943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.958±0.00 N/A N/A N/A
ENST00000493058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494738 N/A N/A N/A N/A N/A N/A 0.247±0.00 0.074±0.00 N/A N/A N/A N/A N/A 1.780±0.00
ENSG00000178623 ENST00000319838 N/A N/A N/A N/A N/A 0.985±0.00 N/A N/A N/A N/A N/A 13.936±9.22 N/A N/A
ENST00000403859 N/A N/A N/A N/A N/A 1.254±0.00 N/A N/A N/A 0.349±0.00 N/A N/A N/A N/A
ENST00000407714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430267 0.763±0.00 3.256±0.00 N/A N/A N/A 7.224±0.00 N/A N/A N/A 0.454±0.00 0.279±0.00 7.776±0.00 N/A N/A
ENST00000438013 N/A N/A N/A N/A 0.750±0.00 1.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026270 ENSMUST00000027488 6.125±0.97 9.498±2.23 7.456±0.67 14.344±10.12 7.312±1.57 10.984±2.29 2.462±0.40 11.997±1.22 10.930±4.04 9.203±1.63 1.645±0.33 12.098±6.06 6.421±3.84 13.970±0.37
ENSMUST00000117814 2.633±0.38 8.599±0.80 2.886±0.52 5.373±0.81 2.244±0.00 4.688±0.58 0.877±0.21 5.349±1.22 2.099±0.29 N/A N/A 4.566±0.13 4.126±1.38 N/A
ENSMUST00000128429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152983 N/A N/A N/A 5.703±0.00 N/A N/A N/A N/A N/A N/A 0.730±0.26 5.002±2.31 5.816±1.78 7.807±0.00
ENSMUST00000153828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026271 ENSMUST00000027489 N/A N/A N/A 0.028±0.01 N/A N/A 0.020±0.00 0.110±0.00 0.085±0.01 N/A 0.065±0.01 0.235±0.00 0.126±0.05 N/A
ENSMUST00000064480 0.243±0.00 0.210±0.09 0.079±0.00 N/A 0.599±0.12 4.031±1.05 0.141±0.00 0.088±0.02 0.058±0.01 0.325±0.00 0.032±0.01 0.153±0.00 0.189±0.13 0.147±0.00
ENSMUST00000169198 0.271±0.10 0.165±0.07 0.080±0.01 0.032±0.00 0.418±0.17 1.870±0.01 0.061±0.00 0.091±0.04 0.062±0.03 0.508±0.13 0.029±0.00 0.354±0.19 0.217±0.12 0.093±0.02
ENSMUST00000185421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186298 0.898±0.23 0.524±0.14 0.264±0.05 0.095±0.01 1.929±0.83 9.844±0.69 0.245±0.13 0.499±0.13 0.245±0.12 2.519±0.19 0.040±0.01 1.402±0.67 0.306±0.19 0.262±0.08
ENSMUST00000189697 N/A 0.559±0.18 N/A 0.259±0.00 N/A 12.789±0.00 0.183±0.00 0.588±0.06 0.250±0.12 N/A 0.076±0.04 1.570±0.84 N/A 0.401±0.00

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