C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003NG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000233608-ENSG00000068024 CGP 9606 2:238848032-239401654
GeneTranscriptPositionBiotype
ENSG00000068024 (HDAC4)
histone deacetylase 4 		ENST00000345617 (HDAC4-001) 239048168-239400949 protein_coding
ENST00000430200 (HDAC4-013) 239053046-239066981 protein_coding
ENST00000445704 (HDAC4-009) 239134325-239140973 protein_coding
ENST00000446876 (HDAC4-007) 239176453-239309212 protein_coding
ENST00000454542 (HDAC4-008) 239163833-239191056 protein_coding
ENST00000460235 (HDAC4-011) 239102609-239108104 retained_intron
ENST00000461113 (HDAC4-006) 239126633-239155013 retained_intron
ENST00000463007 (HDAC4-004) 239089676-239298639 retained_intron
ENST00000487617 (HDAC4-014) 239080918-239108053 retained_intron
ENST00000493582 (HDAC4-002) 239094574-239401654 retained_intron
ENST00000494800 (HDAC4-012) 239055184-239081135 processed_transcript
ENST00000495497 (HDAC4-010) 239091144-239102841 retained_intron
ENST00000496347 (HDAC4-005) 239186488-239236669 retained_intron
ENST00000535493 (HDAC4-016) 239094890-239298530 retained_intron
ENST00000543185 (HDAC4-201) 239048169-239400949 protein_coding
ENST00000544989 (HDAC4-015) 239236598-239401011 protein_coding
ENST00000553145 (HDAC4-018) 239134349-239155575 processed_transcript
ENSG00000227744 (FLJ43879)
FLJ43879 protein 		ENST00000455228 (FLJ43879-001) 238919302-238926269 lincRNA
ENSG00000233608 (TWIST2)
twist family bHLH transcription factor 2 		ENST00000448943 (TWIST2-001) 238848032-238887252 protein_coding
ENST00000612363 (TWIST2-201) 238848032-238910543 protein_coding
ENSG00000264103 (AC017028.2)
 ENST00000584260 (AC017028.2-201) 239069360-239069453 miRNA
ENSG00000264810 (MIR4441)
microRNA 4441 		ENST00000582623 (MIR4441-201) 239085827-239085926 miRNA
ENSG00000265215 (MIR4269)
microRNA 4269 		ENST00000578705 (MIR4269-201) 239305462-239305545 miRNA
ENSG00000265416 (AC017028.6)
 ENST00000579869 (AC017028.6-201) 239086343-239086442 miRNA
ENSG00000265891 (AC017028.7)
 ENST00000582701 (AC017028.7-201) 239085698-239085796 miRNA
ENSG00000265979 (AC017028.8)
 ENST00000581111 (AC017028.8-201) 239069605-239069698 miRNA
ENSG00000266109 (MIR4440)
microRNA 4440 		ENST00000583986 (MIR4440-201) 239068817-239068914 miRNA
ENSG00000280260 (AC017028.10)
 ENST00000623536 (AC017028.10-201) 239161797-239162357 protein_coding
CIL_0003NG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000007805-ENSMUSG00000026313 CGP 10090 1:91801461-92180341
GeneTranscriptPositionBiotype
ENSMUSG00000007805 (Twist2)
twist basic helix-loop-helix transcription factor 2 		ENSMUST00000007949 (Twist2-001) 91801461-91848028 protein_coding
ENSMUST00000186075 (Twist2-002) 91801470-91803994 protein_coding
ENSMUSG00000026313 (Hdac4)
histone deacetylase 4 		ENSMUST00000008995 (Hdac4-201) 91932757-92148393 protein_coding
ENSMUST00000097644 (Hdac4-001) 91928779-92180341 protein_coding
ENSMUST00000185267 (Hdac4-008) 92003670-92006860 retained_intron
ENSMUST00000185341 (Hdac4-007) 92029966-92113331 processed_transcript
ENSMUST00000186002 (Hdac4-003) 92029955-92180297 protein_coding
ENSMUST00000187308 (Hdac4-004) 91955374-91975501 protein_coding
ENSMUST00000187622 (Hdac4-006) 92030050-92113331 processed_transcript
ENSMUST00000189303 (Hdac4-002) 91932958-92006855 processed_transcript
ENSMUST00000189730 (Hdac4-009) 91989051-91992626 retained_intron
ENSMUST00000191327 (Hdac4-005) 91933203-91934864 retained_intron
ENSMUSG00000100980 (RP23-5H15.1)
predicted gene 29100 		ENSMUST00000187564 (RP23-5H15.1-001) 91798528-91802937 antisense
ENSMUSG00000101414 (RP23-5H15.2)
predicted gene 29101 		ENSMUST00000188329 (RP23-5H15.2-001) 91822515-91823985 sense_intronic

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NG_0001ENSG00000068024ENST00000345617ENST00000430200ENST00000445704ENST00000446876ENST00000454542ENST00000460235ENST00000461113ENST00000463007ENST00000487617ENST00000493582ENST00000494800ENST00000495497ENST00000496347ENST00000535493ENST00000543185ENST00000544989ENST00000553145ENSG00000227744ENST00000455228ENSG00000233608ENST00000448943ENST00000612363ENSG00000264103ENST00000584260ENSG00000264810ENST00000582623ENSG00000265215ENST00000578705ENSG00000265416ENST00000579869ENSG00000265891ENST00000582701ENSG00000265979ENST00000581111ENSG00000266109ENST00000583986ENSG00000280260ENST00000623536CIL_0003NG_0002ENSMUSG00000007805ENSMUST00000007949ENSMUST00000186075ENSMUSG00000026313ENSMUST00000008995ENSMUST00000097644ENSMUST00000185267ENSMUST00000185341ENSMUST00000186002ENSMUST00000187308ENSMUST00000187622ENSMUST00000189303ENSMUST00000189730ENSMUST00000191327ENSMUSG00000100980ENSMUST00000187564ENSMUSG00000101414ENSMUST00000188329
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003NG_0001ENSG00000068024ENST00000345617ENST00000463007ENST00000493582ENST00000543185ENST00000544989ENSG00000227744ENST00000455228ENSG00000233608ENST00000448943ENST00000612363ENSG00000264103ENST00000584260ENSG00000264810ENST00000582623ENSG00000265215ENST00000578705ENSG00000265416ENST00000579869ENSG00000265891ENST00000582701ENSG00000265979ENST00000581111ENSG00000266109ENST00000583986ENSG00000280260ENST00000623536CIL_0003NG_0002ENSMUSG00000007805ENSMUST00000007949ENSMUST00000186075ENSMUSG00000026313ENSMUST00000008995ENSMUST00000097644ENSMUST00000189303ENSMUSG00000100980ENSMUST00000187564ENSMUSG00000101414ENSMUST00000188329
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000068024 ENST00000345617 0.737±0.00 N/A N/A 0.708±0.00 N/A N/A 0.562±0.00 N/A N/A 0.784±0.00 3.481±0.00 2.007±0.40 0.225±0.00 1.184±0.00
ENST00000430200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461113 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.980±0.00 N/A N/A N/A
ENST00000487617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493582 N/A N/A N/A N/A 0.765±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543185 0.919±0.00 N/A N/A 0.589±0.00 N/A N/A 0.578±0.00 N/A 0.579±0.00 N/A N/A 1.356±0.33 N/A N/A
ENST00000544989 N/A N/A N/A N/A N/A N/A N/A 4.957±0.00 N/A N/A N/A N/A N/A N/A
ENST00000553145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227744 ENST00000455228 0.046±0.00 0.153±0.00 N/A 0.069±0.00 0.029±0.00 0.052±0.00 0.046±0.00 0.062±0.00 0.005±0.00 0.125±0.00 N/A 0.049±0.03 0.015±0.00 0.097±0.00
ENSG00000233608 ENST00000448943 N/A N/A N/A 0.013±0.00 0.593±0.00 0.212±0.00 0.076±0.00 N/A 0.096±0.05 0.375±0.00 N/A N/A N/A N/A
ENST00000612363 44.115±0.00 2.699±0.00 0.058±0.00 0.040±0.00 11.512±11.10 7.708±7.27 1.254±0.00 1.124±0.00 0.514±0.29 2.319±1.95 0.901±0.00 11.240±11.84 13.627±6.84 4.419±2.32
ENSG00000264103 ENST00000584260 N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.301±0.00 N/A N/A N/A
ENSG00000264810 ENST00000582623 N/A N/A N/A 0.799±0.00 N/A N/A N/A 1.070±0.00 N/A N/A N/A 0.961±0.00 N/A 0.887±0.00
ENSG00000265215 ENST00000578705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 49.089±0.00 N/A N/A
ENSG00000265416 ENST00000579869 N/A 0.278±0.00 N/A 1.467±0.00 2.014±0.00 N/A N/A N/A N/A N/A N/A 21.492±0.00 N/A N/A
ENSG00000265891 ENST00000582701 N/A N/A N/A N/A N/A 1.879±0.00 N/A 1.588±0.00 N/A N/A 1.981±0.00 1.089±0.00 N/A N/A
ENSG00000265979 ENST00000581111 N/A N/A N/A 0.371±0.00 N/A N/A 0.304±0.00 N/A N/A N/A N/A N/A N/A 1.502±0.00
ENSG00000266109 ENST00000583986 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A N/A N/A
ENSG00000280260 ENST00000623536 N/A N/A N/A N/A 0.399±0.00 2.543±0.00 N/A N/A N/A 0.420±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000007805 ENSMUST00000007949 36.512±29.38 5.342±0.64 10.932±0.58 6.267±3.59 17.670±7.68 3.357±0.57 1.536±0.64 0.841±0.23 0.203±0.22 5.292±0.31 0.242±0.14 16.742±8.91 1.610±1.30 0.299±0.23
ENSMUST00000186075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A N/A
ENSMUSG00000026313 ENSMUST00000008995 N/A 7.685±1.68 N/A N/A 2.546±0.36 3.062±1.04 0.977±0.00 1.223±0.00 N/A 1.967±0.68 N/A 8.412±1.42 4.024±0.28 2.401±0.32
ENSMUST00000097644 3.182±1.20 12.353±4.37 1.890±0.19 4.446±2.56 2.813±1.48 4.525±1.37 1.302±0.34 1.470±0.12 0.634±0.36 4.081±1.70 1.220±0.33 5.850±2.66 2.642±1.27 0.464±0.17
ENSMUST00000185267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.943±0.00 2.840±0.36
ENSMUST00000189730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100980 ENSMUST00000187564 N/A N/A N/A 0.564±0.00 0.142±0.00 N/A N/A N/A 0.011±0.00 N/A 0.022±0.01 0.049±0.02 0.025±0.00 0.025±0.01
ENSMUSG00000101414 ENSMUST00000188329 0.474±0.44 0.075±0.03 0.097±0.09 0.086±0.06 0.100±0.11 0.050±0.00 0.029±0.01 N/A 0.009±0.00 0.026±0.00 0.034±0.01 0.144±0.07 0.018±0.01 0.071±0.01

Loading