C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003O7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075716-ENSDARG00000058784 CGP 7955 2:4622092-4763716
GeneTranscriptPositionBiotype
ENSDARG00000058784 (tfr1a)
transferrin receptor 1a 		ENSDART00000081717 (tfr1a-201) 4738463-4756752 protein_coding
ENSDART00000139602 (tfr1a-001) 4738019-4763716 protein_coding
ENSDARG00000075716 (tnk2b)
tyrosine kinase, non-receptor, 2b 		ENSDART00000110284 (tnk2b-201) 4622092-4668067 protein_coding
ENSDART00000123302 (tnk2b-202) 4622092-4668067 protein_coding
ENSDART00000148409 (tnk2b-003) 4668055-4686262 protein_coding
ENSDART00000148745 (tnk2b-001) 4664598-4676326 protein_coding
ENSDART00000155358 (tnk2b-002) 4667850-4686262 retained_intron
ENSDARG00000096841 (si:ch73-329g8.2)
si:ch73-329g8.2 		ENSDART00000155895 (si:ch73-329g8.2-001) 4701444-4703022 lincRNA
CIL_0003O7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000061938-ENSG00000072274 CGP 9606 3:195863364-196082189
GeneTranscriptPositionBiotype
ENSG00000061938 (TNK2)
tyrosine kinase, non-receptor, 2 		ENST00000333602 (TNK2-002) 195863364-195909084 protein_coding
ENST00000381916 (TNK2-005) 195863364-195895561 protein_coding
ENST00000411741 (TNK2-019) 195868588-195876736 protein_coding
ENST00000416152 (TNK2-010) 195863364-195872382 protein_coding
ENST00000420716 (TNK2-011) 195863365-195869690 retained_intron
ENST00000424563 (TNK2-020) 195868356-195876695 protein_coding
ENST00000427576 (TNK2-012) 195886974-195896783 protein_coding
ENST00000428187 (TNK2-007) 195863365-195892784 protein_coding
ENST00000430929 (TNK2-017) 195879083-195885033 nonsense_mediated_decay
ENST00000433111 (TNK2-014) 195884975-195894730 protein_coding
ENST00000438207 (TNK2-016) 195878511-195888584 protein_coding
ENST00000439230 (TNK2-004) 195868223-195895933 nonsense_mediated_decay
ENST00000447060 (TNK2-015) 195884845-195892601 nonsense_mediated_decay
ENST00000464041 (TNK2-006) 195868217-195892775 retained_intron
ENST00000468680 (TNK2-022) 195870173-195872806 retained_intron
ENST00000468819 (TNK2-003) 195879122-195911945 processed_transcript
ENST00000478623 (TNK2-021) 195868506-195876650 processed_transcript
ENST00000478715 (TNK2-023) 195869459-195872403 retained_intron
ENST00000481865 (TNK2-009) 195868225-195886273 retained_intron
ENST00000486523 (TNK2-013) 195872280-195896161 processed_transcript
ENST00000489628 (TNK2-018) 195868630-195879486 retained_intron
ENST00000495247 (TNK2-024) 195868084-195870168 processed_transcript
ENSG00000072274 (TFRC)
transferrin receptor 		ENST00000360110 (TFRC-001) 196049284-196082189 protein_coding
ENST00000392396 (TFRC-002) 196049476-196082090 protein_coding
ENST00000420415 (TFRC-003) 196049284-196082094 protein_coding
ENST00000421258 (TFRC-005) 196071440-196082096 nonsense_mediated_decay
ENST00000426789 (TFRC-015) 196027183-196055214 protein_coding
ENST00000463047 (TFRC-014) 196053492-196055561 retained_intron
ENST00000463356 (TFRC-016) 196057962-196060249 processed_transcript
ENST00000464011 (TFRC-006) 196074197-196082090 processed_transcript
ENST00000464368 (TFRC-008) 196062391-196065550 retained_intron
ENST00000465288 (TFRC-009) 196058283-196063424 processed_transcript
ENST00000475593 (TFRC-011) 196053509-196062975 retained_intron
ENST00000477148 (TFRC-010) 196058326-196063192 retained_intron
ENST00000482479 (TFRC-013) 196058211-196058958 retained_intron
ENST00000483983 (TFRC-012) 196055111-196060604 retained_intron
ENST00000491658 (TFRC-007) 196067607-196069700 retained_intron
ENSG00000185485 (SDHAP1)
succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 		ENST00000354559 (SDHAP1-007) 195963104-195967895 processed_transcript
ENST00000413474 (SDHAP1-005) 195979745-195990275 processed_transcript
ENST00000427149 (SDHAP1-008) 195959748-195967520 processed_transcript
ENST00000427415 (SDHAP1-003) 195985446-195990318 retained_intron
ENST00000427841 (SDHAP1-002) 195959921-195990279 processed_transcript
ENST00000435731 (SDHAP1-004) 195982293-195990305 processed_transcript
ENST00000440850 (SDHAP1-001) 195963335-195990258 transcribed_unprocessed_pseudogene
ENST00000457601 (SDHAP1-006) 195971253-195975902 retained_intron
ENSG00000224614 (TNK2-AS1)
TNK2 antisense RNA 1 		ENST00000458180 (TNK2-AS1-001) 195908076-195911257 antisense
ENSG00000228413 (AC024937.2)
 ENST00000429793 (AC024937.2-001) 196044695-196045254 processed_pseudogene
ENSG00000231443 (AC024937.6)
 ENST00000429866 (AC024937.6-001) 195937243-195938739 processed_pseudogene
ENSG00000231464 (AC024937.4)
 ENST00000411669 (AC024937.4-001) 195996738-195998233 processed_pseudogene
ENSG00000239122 (RNU2-11P)
RNA, U2 small nuclear 11, pseudogene 		ENST00000459191 (RNU2-11P-201) 195928589-195928775 snRNA
ENSG00000260261 (RP11-480A16.1)
 ENST00000570130 (RP11-480A16.1-001) 195949188-195952695 lincRNA
ENSG00000273009 (RP11-352G9.1)
 ENST00000607976 (RP11-352G9.1-001) 195913078-195913683 lincRNA
ENSG00000276489 (MIR6829)
microRNA 6829 		ENST00000620375 (MIR6829-201) 195882329-195882395 miRNA
ENSG00000278820 (AC024937.1)
 ENST00000610447 (AC024937.1-201) 195960500-195960612 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003O7_0001ENSDARG00000058784ENSDART00000081717ENSDART00000139602ENSDARG00000075716ENSDART00000110284ENSDART00000123302ENSDART00000148409ENSDART00000148745ENSDART00000155358ENSDARG00000096841ENSDART00000155895CIL_0003O7_0002ENSG00000061938ENST00000333602ENST00000381916ENST00000411741ENST00000416152ENST00000420716ENST00000424563ENST00000427576ENST00000428187ENST00000430929ENST00000433111ENST00000438207ENST00000439230ENST00000447060ENST00000464041ENST00000468680ENST00000468819ENST00000478623ENST00000478715ENST00000481865ENST00000486523ENST00000489628ENST00000495247ENSG00000072274ENST00000360110ENST00000392396ENST00000420415ENST00000421258ENST00000426789ENST00000463047ENST00000463356ENST00000464011ENST00000464368ENST00000465288ENST00000475593ENST00000477148ENST00000482479ENST00000483983ENST00000491658ENSG00000185485ENST00000354559ENST00000413474ENST00000427149ENST00000427415ENST00000427841ENST00000435731ENST00000440850ENST00000457601ENSG00000224614ENST00000458180ENSG00000228413ENST00000429793ENSG00000231443ENST00000429866ENSG00000231464ENST00000411669ENSG00000239122ENST00000459191ENSG00000260261ENST00000570130ENSG00000273009ENST00000607976ENSG00000276489ENST00000620375ENSG00000278820ENST00000610447
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003O7_0001ENSDARG00000058784ENSDART00000081717ENSDART00000139602ENSDARG00000075716ENSDART00000110284ENSDART00000123302ENSDARG00000096841ENSDART00000155895CIL_0003O7_0002ENSG00000061938ENST00000333602ENST00000381916ENST00000411741ENST00000416152ENST00000428187ENST00000430929ENST00000438207ENST00000468819ENST00000481865ENST00000489628ENSG00000072274ENST00000360110ENST00000392396ENST00000420415ENSG00000185485ENST00000354559ENST00000427149ENST00000427415ENST00000427841ENST00000435731ENST00000440850ENST00000457601ENSG00000224614ENST00000458180ENSG00000228413ENST00000429793ENSG00000231443ENST00000429866ENSG00000231464ENST00000411669ENSG00000239122ENST00000459191ENSG00000260261ENST00000570130ENSG00000273009ENST00000607976ENSG00000276489ENST00000620375ENSG00000278820ENST00000610447
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000058784 ENSDART00000081717 N/A N/A N/A 0.557±0.00 N/A N/A 6.038±0.10 N/A 0.409±0.00 N/A 1.201±0.00 N/A N/A N/A
ENSDART00000139602 N/A N/A N/A 0.168±0.02 N/A N/A 1.558±0.00 N/A N/A N/A 0.414±0.00 N/A N/A N/A
ENSDARG00000075716 ENSDART00000110284 N/A N/A N/A 0.610±0.69 N/A N/A 2.032±0.00 0.153±0.00 0.322±0.00 N/A 0.743±0.00 N/A N/A N/A
ENSDART00000123302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A N/A
ENSDART00000148409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000096841 ENSDART00000155895 N/A N/A N/A 11.979±2.31 N/A N/A 20.079±9.48 27.490±0.00 0.467±0.00 N/A 2.219±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061938 ENST00000333602 2.666±0.00 3.906±0.00 N/A 6.744±5.53 1.979±0.00 5.160±0.00 0.632±0.59 N/A 1.351±0.00 N/A N/A 4.438±0.00 1.874±0.00 2.615±0.00
ENST00000381916 1.777±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000411741 N/A N/A 0.615±0.00 N/A N/A N/A N/A 0.986±0.00 N/A N/A N/A N/A N/A N/A
ENST00000416152 4.091±0.00 12.638±0.00 0.307±0.00 N/A 4.547±0.00 N/A N/A 1.434±0.00 2.671±0.00 6.038±0.00 N/A 21.533±14.30 3.781±1.85 8.111±1.76
ENST00000420716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428187 2.242±0.00 N/A N/A 6.423±0.00 2.225±0.00 N/A 0.915±0.00 N/A N/A N/A N/A 3.289±0.00 N/A N/A
ENST00000430929 N/A N/A N/A N/A N/A N/A N/A 0.896±0.00 N/A 2.309±0.00 N/A N/A N/A N/A
ENST00000433111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438207 N/A N/A N/A 5.848±0.00 N/A N/A 0.136±0.00 N/A N/A 1.145±0.00 4.705±0.00 N/A N/A N/A
ENST00000439230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468819 N/A N/A N/A N/A N/A N/A N/A 0.855±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478715 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481865 N/A N/A 0.052±0.00 N/A N/A N/A 0.021±0.00 0.382±0.00 N/A 0.270±0.00 N/A N/A N/A N/A
ENST00000486523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489628 N/A N/A N/A N/A N/A N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A 11.566±0.00
ENST00000495247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000072274 ENST00000360110 8.643±0.00 7.239±0.00 1.979±0.00 9.669±0.88 9.391±4.47 6.595±0.78 10.474±7.43 6.721±1.74 3.780±0.72 25.118±3.75 17.411±0.00 21.785±5.23 16.748±0.25 5.777±0.07
ENST00000392396 3.023±0.00 2.443±0.00 N/A 2.223±0.00 N/A N/A N/A N/A N/A N/A 2.172±0.00 N/A 8.839±0.00 3.090±0.00
ENST00000420415 N/A N/A N/A 2.608±0.00 2.157±0.00 N/A 4.668±0.00 5.593±0.00 N/A N/A N/A N/A N/A 4.597±0.00
ENST00000421258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465288 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185485 ENST00000354559 0.570±0.00 N/A N/A N/A 2.248±0.00 0.931±0.00 0.479±0.00 1.301±0.00 1.022±0.00 0.834±0.00 N/A 3.137±1.27 0.530±0.00 1.829±0.00
ENST00000413474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427149 N/A 2.361±0.00 N/A N/A N/A 0.707±0.00 1.041±0.00 2.135±0.00 0.231±0.00 2.085±0.00 N/A 1.538±1.14 1.161±0.00 N/A
ENST00000427415 N/A N/A N/A N/A N/A 0.758±0.00 N/A N/A N/A N/A N/A N/A 0.930±0.00 N/A
ENST00000427841 0.503±0.00 1.018±0.00 N/A 0.563±0.39 0.543±0.09 0.246±0.00 0.526±0.00 0.764±0.00 0.385±0.28 0.968±0.00 N/A 1.974±0.89 0.545±0.10 1.608±0.70
ENST00000435731 N/A N/A 3.212±0.00 N/A N/A N/A N/A N/A N/A N/A 2.707±0.00 N/A 1.335±0.00 N/A
ENST00000440850 N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.00 N/A 0.187±0.13 0.979±0.00 0.401±0.00 N/A
ENST00000457601 N/A N/A 7.358±0.00 1.076±0.00 3.132±0.00 5.361±0.00 2.066±1.34 10.202±0.00 4.784±0.00 6.586±0.00 1.983±1.44 3.446±0.86 N/A 12.580±0.00
ENSG00000224614 ENST00000458180 N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A 0.353±0.00 N/A N/A N/A N/A N/A
ENSG00000228413 ENST00000429793 N/A N/A N/A N/A 0.081±0.00 0.147±0.00 N/A N/A N/A 0.476±0.00 N/A 0.377±0.00 N/A 0.329±0.00
ENSG00000231443 ENST00000429866 N/A 0.106±0.00 N/A 0.047±0.00 0.105±0.00 0.158±0.00 0.034±0.00 0.038±0.00 0.045±0.00 N/A N/A 0.198±0.13 0.075±0.04 0.119±0.00
ENSG00000231464 ENST00000411669 N/A 0.010±0.00 N/A 0.019±0.00 N/A N/A N/A 0.087±0.00 N/A 0.036±0.00 0.009±0.00 0.060±0.03 N/A 0.049±0.01
ENSG00000239122 ENST00000459191 0.263±0.00 0.182±0.00 N/A 0.186±0.00 4.108±0.00 N/A N/A 0.352±0.00 N/A N/A N/A 0.957±0.31 N/A 0.616±0.00
ENSG00000260261 ENST00000570130 0.270±0.00 1.024±0.00 0.825±0.00 1.136±0.00 0.964±0.63 0.496±0.41 0.301±0.04 0.523±0.31 0.336±0.25 0.454±0.33 0.193±0.12 1.127±0.30 0.133±0.02 1.277±0.83
ENSG00000273009 ENST00000607976 N/A 0.257±0.00 N/A 0.253±0.00 N/A 0.021±0.00 N/A 0.163±0.00 0.083±0.00 N/A 0.615±0.00 0.598±0.12 0.092±0.01 0.317±0.30
ENSG00000276489 ENST00000620375 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.767±0.00 N/A N/A N/A N/A
ENSG00000278820 ENST00000610447 0.329±0.00 1.272±0.00 N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A 9.764±0.00 N/A N/A

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