C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185507-ENSG00000099834 CGP 9606 11:612553-626078
GeneTranscriptPositionBiotype
ENSG00000099834 (CDHR5)
cadherin-related family member 5 		ENST00000349570 (CDHR5-002) 617256-625169 protein_coding
ENST00000358353 (CDHR5-001) 616577-626078 protein_coding
ENST00000397542 (CDHR5-201) 616565-625067 protein_coding
ENST00000526077 (CDHR5-008) 621217-624955 protein_coding
ENST00000529337 (CDHR5-010) 624213-625169 processed_transcript
ENST00000531088 (CDHR5-006) 621420-624955 protein_coding
ENST00000531177 (CDHR5-004) 617256-624932 nonsense_mediated_decay
ENST00000531899 (CDHR5-005) 619416-624955 retained_intron
ENST00000532949 (CDHR5-009) 619688-621137 processed_transcript
ENST00000534311 (CDHR5-007) 621397-624955 protein_coding
ENSG00000185507 (IRF7)
interferon regulatory factor 7 		ENST00000330243 (IRF7-001) 612591-615970 protein_coding
ENST00000348655 (IRF7-005) 612555-615650 protein_coding
ENST00000397566 (IRF7-201) 612555-615728 protein_coding
ENST00000397570 (IRF7-202) 612576-615728 protein_coding
ENST00000397574 (IRF7-002) 612559-615999 protein_coding
ENST00000469048 (IRF7-004) 612583-615650 nonsense_mediated_decay
ENST00000525445 (IRF7-006) 612553-615626 protein_coding
ENST00000525750 (IRF7-009) 613553-614397 retained_intron
ENST00000527160 (IRF7-010) 614009-614887 retained_intron
ENST00000528413 (IRF7-014) 612583-613854 retained_intron
ENST00000531912 (IRF7-013) 612588-613591 retained_intron
ENST00000532096 (IRF7-011) 614090-615650 retained_intron
ENST00000532326 (IRF7-012) 612591-615983 nonsense_mediated_decay
ENST00000532788 (IRF7-008) 613822-615979 nonsense_mediated_decay
ENST00000533182 (IRF7-007) 612561-615950 nonsense_mediated_decay
ENST00000533190 (IRF7-015) 614783-615938 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0003OO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025498-ENSMUSG00000025497 CGP 10090 7:141262706-141276786
GeneTranscriptPositionBiotype
ENSMUSG00000025497 (Cdhr5)
cadherin-related family member 5 		ENSMUST00000080654 (Cdhr5-201) 141269085-141276786 protein_coding
ENSMUST00000167263 (Cdhr5-202) 141269085-141276786 protein_coding
ENSMUSG00000025498 (Irf7)
interferon regulatory factor 7 		ENSMUST00000026571 (Irf7-001) 141263183-141266481 protein_coding
ENSMUST00000097952 (Irf7-002) 141263184-141266423 protein_coding
ENSMUST00000106023 (Irf7-003) 141262706-141266421 protein_coding
ENSMUST00000123525 (Irf7-011) 141263432-141265292 protein_coding
ENSMUST00000127161 (Irf7-008) 141265215-141265984 retained_intron
ENSMUST00000127223 (Irf7-012) 141263791-141265131 retained_intron
ENSMUST00000131399 (Irf7-007) 141263973-141266044 processed_transcript
ENSMUST00000146373 (Irf7-006) 141265376-141266421 processed_transcript
ENSMUST00000148414 (Irf7-010) 141264223-141265473 retained_intron
ENSMUST00000155744 (Irf7-004) 141263187-141266422 retained_intron
ENSMUST00000156938 (Irf7-009) 141264800-141265707 retained_intron
ENSMUSG00000038611 (Phrf1)
PHD and ring finger domains 1 		ENSMUST00000106027 (Phrf1-001) 141228789-141262626 protein_coding
ENSMUST00000122143 (Phrf1-009) 141243499-141262595 protein_coding
ENSMUST00000122868 (Phrf1-002) 141256003-141257829 retained_intron
ENSMUST00000130687 (Phrf1-007) 141260397-141262747 protein_coding
ENSMUST00000130852 (Phrf1-006) 141259658-141260587 processed_transcript
ENSMUST00000132540 (Phrf1-005) 141254914-141258069 processed_transcript
ENSMUST00000134057 (Phrf1-004) 141234201-141247317 protein_coding
ENSMUST00000142572 (Phrf1-003) 141259190-141262750 protein_coding
ENSMUST00000144250 (Phrf1-008) 141261679-141262700 processed_transcript
ENSMUST00000144632 (Phrf1-011) 141256004-141256886 retained_intron
ENSMUST00000155123 (Phrf1-010) 141228784-141262742 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OO_0001ENSG00000099834ENST00000349570ENST00000358353ENST00000397542ENST00000526077ENST00000529337ENST00000531088ENST00000531177ENST00000531899ENST00000532949ENST00000534311ENSG00000185507ENST00000330243ENST00000348655ENST00000397566ENST00000397570ENST00000397574ENST00000469048ENST00000525445ENST00000525750ENST00000527160ENST00000528413ENST00000531912ENST00000532096ENST00000532326ENST00000532788ENST00000533182ENST00000533190CIL_0003OO_0002ENSMUSG00000025497ENSMUST00000080654ENSMUST00000167263ENSMUSG00000025498ENSMUST00000026571ENSMUST00000097952ENSMUST00000106023ENSMUST00000123525ENSMUST00000127161ENSMUST00000127223ENSMUST00000131399ENSMUST00000146373ENSMUST00000148414ENSMUST00000155744ENSMUST00000156938ENSMUSG00000038611ENSMUST00000106027ENSMUST00000122143ENSMUST00000122868ENSMUST00000130687ENSMUST00000130852ENSMUST00000132540ENSMUST00000134057ENSMUST00000142572ENSMUST00000144250ENSMUST00000144632ENSMUST00000155123
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OO_0001ENSG00000099834ENST00000349570ENST00000358353ENST00000397542ENST00000531088ENST00000531177ENST00000531899ENST00000532949ENST00000534311ENSG00000185507ENST00000330243ENST00000348655ENST00000397566ENST00000397570ENST00000397574ENST00000469048ENST00000525445ENST00000527160ENST00000528413ENST00000531912ENST00000532096ENST00000532326ENST00000532788ENST00000533182ENST00000533190CIL_0003OO_0002ENSMUSG00000025497ENSMUST00000080654ENSMUST00000167263ENSMUSG00000025498ENSMUST00000026571ENSMUST00000097952ENSMUST00000106023ENSMUST00000131399ENSMUST00000155744ENSMUSG00000038611ENSMUST00000106027ENSMUST00000122143ENSMUST00000130687ENSMUST00000142572ENSMUST00000155123
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099834 ENST00000349570 N/A N/A N/A N/A N/A N/A N/A N/A 10.938±0.00 0.029±0.00 N/A 1.554±1.12 N/A N/A
ENST00000358353 N/A N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397542 N/A N/A 4.129±0.00 0.016±0.00 1.713±0.00 3.711±1.55 0.032±0.00 6.713±3.20 12.048±11.91 N/A N/A 1.694±1.41 N/A 0.215±0.00
ENST00000526077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.191±0.00 0.089±0.00 N/A
ENST00000531177 N/A N/A N/A N/A N/A N/A 0.024±0.00 11.708±0.00 N/A N/A N/A 1.225±0.00 0.029±0.00 0.077±0.00
ENST00000531899 N/A N/A N/A N/A N/A 3.097±0.00 N/A 15.996±0.00 N/A 0.068±0.00 N/A N/A N/A N/A
ENST00000532949 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.855±0.00
ENST00000534311 N/A N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A N/A 3.987±0.00 0.070±0.00 N/A
ENSG00000185507 ENST00000330243 N/A N/A N/A 0.453±0.00 N/A N/A 0.551±0.00 N/A N/A N/A 2.422±0.00 3.332±0.00 2.930±2.04 N/A
ENST00000348655 N/A N/A N/A N/A N/A N/A N/A 2.041±0.00 N/A 0.472±0.00 0.989±0.00 1.307±0.17 N/A N/A
ENST00000397566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.393±0.00 N/A
ENST00000397570 N/A N/A N/A N/A 0.895±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397574 1.253±0.00 N/A N/A N/A N/A 1.460±0.00 N/A N/A N/A 10.577±0.00 N/A 3.828±2.14 1.636±0.92 N/A
ENST00000469048 N/A N/A N/A N/A N/A N/A N/A 2.297±0.00 N/A N/A N/A 2.831±0.18 5.541±0.00 N/A
ENST00000525445 N/A 4.631±0.00 N/A N/A 1.546±0.00 N/A N/A 4.770±0.00 8.667±0.00 9.429±0.00 N/A 5.085±0.00 N/A 3.142±0.00
ENST00000525750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527160 N/A N/A N/A N/A N/A N/A N/A 1.489±0.00 N/A N/A N/A N/A N/A N/A
ENST00000528413 N/A N/A N/A 0.593±0.00 N/A N/A 1.249±0.57 N/A 0.138±0.00 0.745±0.00 2.406±0.24 1.641±0.00 5.435±0.00 N/A
ENST00000531912 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A 2.954±0.00 N/A 0.871±0.00
ENST00000532096 N/A N/A 0.482±0.00 0.494±0.00 0.907±0.00 0.981±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532326 N/A N/A N/A N/A N/A N/A N/A 3.639±0.00 6.351±0.00 N/A N/A N/A 2.387±0.00 N/A
ENST00000532788 N/A N/A N/A N/A 2.966±0.00 1.916±0.00 1.120±0.00 N/A N/A N/A N/A N/A N/A 3.682±0.00
ENST00000533182 N/A 3.886±0.00 N/A 0.534±0.00 N/A 1.836±0.00 0.076±0.00 N/A N/A 8.365±0.00 N/A N/A 2.410±0.00 N/A
ENST00000533190 N/A N/A N/A 0.164±0.00 0.804±0.00 0.766±0.00 0.184±0.00 0.396±0.00 0.532±0.00 N/A N/A 0.215±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025497 ENSMUST00000080654 0.081±0.04 4.066±1.17 0.004±0.00 0.010±0.00 0.173±0.12 77.146±21.01 0.015±0.01 19.114±2.84 3.944±3.91 0.251±0.23 0.043±0.02 0.456±0.31 3.967±0.82 0.253±0.03
ENSMUST00000167263 0.033±0.02 1.654±1.03 0.012±0.00 0.017±0.00 0.089±0.04 93.412±14.74 N/A 18.818±3.84 3.073±2.18 0.221±0.10 N/A 0.422±0.35 4.448±2.72 0.115±0.06
ENSMUSG00000025498 ENSMUST00000026571 18.701±9.13 21.056±0.00 8.237±1.37 N/A 21.400±7.11 41.896±11.44 4.551±0.91 13.490±4.24 13.972±7.82 7.993±0.71 N/A 15.711±4.19 11.553±0.18 N/A
ENSMUST00000097952 N/A N/A N/A N/A 5.996±0.00 N/A N/A N/A 7.480±3.30 N/A N/A N/A N/A N/A
ENSMUST00000106023 N/A N/A N/A N/A N/A 19.281±5.45 N/A N/A 5.645±2.54 N/A N/A N/A N/A N/A
ENSMUST00000123525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131399 N/A N/A N/A N/A 17.312±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155744 10.204±1.21 19.076±5.25 5.060±0.00 N/A 15.091±5.04 29.183±5.46 4.412±1.66 8.485±0.85 11.404±6.41 8.231±1.79 N/A 10.844±2.14 32.914±0.00 N/A
ENSMUST00000156938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038611 ENSMUST00000106027 5.517±2.72 8.962±1.34 3.777±1.58 9.303±5.54 4.624±2.04 7.310±0.73 2.124±0.33 4.080±0.48 4.597±2.08 5.362±0.74 2.188±0.89 8.084±7.07 16.855±8.34 6.744±6.64
ENSMUST00000122143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.579±0.00 4.010±0.00 N/A N/A
ENSMUST00000122868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130687 N/A N/A N/A 2.842±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 51.565±0.52 N/A
ENSMUST00000130852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142572 N/A N/A N/A 3.578±1.91 N/A N/A N/A N/A N/A N/A 1.986±0.34 11.042±0.00 16.965±0.00 15.686±0.00
ENSMUST00000144250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.316±0.11 6.913±0.70 8.772±2.17 N/A

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