C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000122592-ENSG00000078399 CGP 9606 7:27153716-27175180
GeneTranscriptPositionBiotype
ENSG00000078399 (HOXA9)
homeobox A9 		ENST00000343483 (HOXA9-001) 27162435-27165530 protein_coding
ENST00000396345 (HOXA9-003) 27163521-27165526 protein_coding
ENST00000465941 (HOXA9-006) 27163664-27175180 processed_transcript
ENST00000487384 (HOXA9-004) 27163307-27170498 processed_transcript
ENST00000489695 (HOXA9-005) 27163682-27169737 processed_transcript
ENST00000497089 (HOXA9-002) 27162600-27169444 processed_transcript
ENSG00000122592 (HOXA7)
homeobox A7 		ENST00000242159 (HOXA7-001) 27153716-27156677 protein_coding
ENST00000519842 (HOXA7-002) 27156454-27157936 protein_coding
ENST00000523796 (HOXA7-003) 27154783-27155998 processed_transcript
ENSG00000253293 (HOXA10)
homeobox A10 		ENST00000283921 (HOXA10-001) 27170591-27174306 protein_coding
ENST00000396344 (HOXA10-003) 27171220-27180261 protein_coding
ENST00000519593 (HOXA10-006) 27171777-27172889 processed_transcript
ENST00000521421 (HOXA10-005) 27171463-27172889 processed_transcript
ENST00000524368 (HOXA10-004) 27171378-27172963 processed_transcript
ENST00000613671 (HOXA10-201) 27170592-27174255 protein_coding
ENSG00000270182 (RP1-170O19.24)
 ENST00000602610 (RP1-170O19.24-001) 27158344-27158976 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0003PA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038236-ENSMUSG00000038227 CGP 10090 6:52214491-52231089
GeneTranscriptPositionBiotype
ENSMUSG00000038227 (Hoxa9)
homeobox A9 		ENSMUST00000048680 (Hoxa9-001) 52223100-52227370 protein_coding
ENSMUST00000114425 (Hoxa9-002) 52224121-52226189 protein_coding
ENSMUST00000154641 (Hoxa9-004) 52223963-52231089 processed_transcript
ENSMUST00000156540 (Hoxa9-003) 52224323-52230279 processed_transcript
ENSMUST00000174115 (Hoxa9-005) 52228247-52230532 retained_intron
ENSMUSG00000038236 (Hoxa7)
homeobox A7 		ENSMUST00000048715 (Hoxa7-201) 52215623-52218573 protein_coding
ENSMUST00000134367 (Hoxa7-004) 52215753-52218711 protein_coding
ENSMUST00000140316 (Hoxa7-003) 52216440-52217452 protein_coding
ENSMUST00000150041 (Hoxa7-001) 52216009-52221854 protein_coding
ENSMUST00000153280 (Hoxa7-002) 52214491-52220393 nonsense_mediated_decay
ENSMUSG00000085696 (Hoxaas3)
Hoxa cluster antisense RNA 3 		ENSMUST00000131502 (Hoxaas3-003) 52201124-52213615 antisense
ENSMUST00000136806 (Hoxaas3-001) 52175235-52215076 antisense
ENSMUST00000139055 (Hoxaas3-002) 52175217-52193020 antisense

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PA_0001ENSG00000078399ENST00000343483ENST00000396345ENST00000465941ENST00000487384ENST00000489695ENST00000497089ENSG00000122592ENST00000242159ENST00000519842ENST00000523796ENSG00000253293ENST00000283921ENST00000396344ENST00000519593ENST00000521421ENST00000524368ENST00000613671ENSG00000270182ENST00000602610CIL_0003PA_0002ENSMUSG00000038227ENSMUST00000048680ENSMUST00000114425ENSMUST00000154641ENSMUST00000156540ENSMUST00000174115ENSMUSG00000038236ENSMUST00000048715ENSMUST00000134367ENSMUST00000140316ENSMUST00000150041ENSMUST00000153280ENSMUSG00000085696ENSMUST00000131502ENSMUST00000136806ENSMUST00000139055
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PA_0001ENSG00000078399ENST00000343483ENST00000396345ENST00000487384ENST00000489695ENST00000497089ENSG00000122592ENST00000242159ENST00000523796ENSG00000253293ENST00000283921ENST00000396344ENST00000524368ENST00000613671ENSG00000270182ENST00000602610CIL_0003PA_0002ENSMUSG00000038227ENSMUST00000048680ENSMUST00000114425ENSMUST00000154641ENSMUST00000174115ENSMUSG00000038236ENSMUST00000048715ENSMUST00000134367ENSMUST00000140316ENSMUST00000153280ENSMUSG00000085696ENSMUST00000131502
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078399 ENST00000343483 N/A 3.169±0.00 0.717±0.00 N/A 2.712±0.00 3.199±1.78 N/A 10.255±0.00 0.764±0.00 N/A 2.744±1.69 N/A 1.517±0.00 0.602±0.47
ENST00000396345 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A N/A 0.851±0.00
ENST00000465941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487384 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A N/A
ENST00000489695 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497089 N/A N/A 1.079±0.00 N/A 1.808±0.00 N/A 0.078±0.00 6.101±0.00 N/A 0.047±0.00 N/A N/A 2.480±0.00 N/A
ENSG00000122592 ENST00000242159 5.756±0.00 8.498±0.00 3.208±0.00 N/A 5.939±4.67 6.102±0.00 N/A 12.808±0.00 N/A 4.127±0.00 6.195±0.00 1.608±0.69 0.529±0.22 6.373±0.00
ENST00000519842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.038±0.00 N/A
ENSG00000253293 ENST00000283921 2.913±0.00 N/A 0.509±0.00 N/A 1.654±0.00 2.463±1.22 N/A N/A 1.472±0.00 N/A 3.086±1.01 N/A 1.758±0.78 N/A
ENST00000396344 N/A N/A 1.030±0.00 N/A 2.107±0.00 N/A N/A N/A 2.837±0.00 0.134±0.00 3.325±0.00 2.416±0.97 2.881±0.00 N/A
ENST00000519593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524368 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 9.179±0.00 N/A 3.116±0.12 N/A
ENST00000613671 7.341±0.00 4.857±0.00 N/A 0.007±0.00 10.391±0.00 12.047±0.00 0.015±0.00 4.003±0.00 2.439±0.00 N/A 6.037±3.64 1.969±1.47 1.915±0.08 1.362±1.15
ENSG00000270182 ENST00000602610 0.035±0.00 0.037±0.00 N/A N/A 0.038±0.00 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A 0.055±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038227 ENSMUST00000048680 9.302±7.13 0.388±0.24 10.662±2.41 0.022±0.00 2.891±2.03 15.590±2.71 0.016±0.01 6.578±1.48 0.080±0.06 0.019±0.00 0.684±0.16 5.001±3.43 0.473±0.39 0.247±0.10
ENSMUST00000114425 8.270±2.89 0.744±0.41 9.569±0.00 0.026±0.00 7.471±3.24 18.191±6.10 0.021±0.00 13.850±3.92 0.214±0.14 0.041±0.02 2.482±0.49 5.156±1.60 2.440±2.16 0.664±0.58
ENSMUST00000154641 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.162±0.00
ENSMUST00000156540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174115 6.648±5.37 N/A 7.204±0.00 0.017±0.00 0.671±0.45 11.152±1.86 N/A 6.252±0.00 0.055±0.04 0.029±0.01 0.711±0.04 3.278±1.43 0.330±0.10 0.183±0.01
ENSMUSG00000038236 ENSMUST00000048715 N/A N/A N/A N/A N/A 14.040±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134367 N/A 6.888±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140316 N/A 9.920±1.27 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153280 6.534±3.58 6.185±1.47 8.455±3.30 N/A 5.705±2.31 18.521±4.75 N/A 14.985±6.80 0.375±0.09 3.945±0.44 1.747±0.20 4.735±1.37 0.526±0.30 N/A
ENSMUSG00000085696 ENSMUST00000131502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.274±2.00 N/A N/A
ENSMUST00000136806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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