C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105991-ENSG00000105996 CGP 9606 7:27092993-27102811
GeneTranscriptPositionBiotype
ENSG00000105991 (HOXA1)
homeobox A1 		ENST00000343060 (HOXA1-001) 27092993-27095974 protein_coding
ENST00000355633 (HOXA1-002) 27093313-27095996 protein_coding
ENSG00000105996 (HOXA2)
homeobox A2 		ENST00000222718 (HOXA2-001) 27100354-27102811 protein_coding
ENST00000612779 (HOXA2-002) 27100694-27102686 retained_intron
ENSG00000233429 (HOTAIRM1)
HOXA transcript antisense RNA, myeloid-specific 1 		ENST00000425358 (HOTAIRM1-004) 27096233-27099966 antisense
ENST00000428939 (HOTAIRM1-003) 27098839-27100139 antisense
ENST00000429611 (HOTAIRM1-002) 27096124-27099966 antisense
ENST00000434063 (HOTAIRM1-001) 27096094-27100154 antisense
ENST00000495032 (HOTAIRM1-005) 27095647-27096327 antisense
ENST00000593300 (HOTAIRM1-006) 27099619-27100265 antisense
ENSG00000276528 (HOTAIRM1_1)
HOX antisense intergenic RNA myeloid 1 conserved region 1 		ENST00000622675 (HOTAIRM1_1.1-201) 27096124-27096248 misc_RNA
ENSG00000276771 (HOTAIRM1_2)
HOX antisense intergenic RNA myeloid 1 conserved region 2 		ENST00000616712 (HOTAIRM1_2.1-201) 27098900-27099114 misc_RNA
ENSG00000277694 (HOTAIRM1_5)
HOX antisense intergenic RNA myeloid 1 conserved region 5 		ENST00000619311 (HOTAIRM1_5.1-201) 27099967-27100111 misc_RNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0003PE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029844-ENSMUSG00000014704 CGP 10090 6:52155590-52164831
GeneTranscriptPositionBiotype
ENSMUSG00000014704 (Hoxa2)
homeobox A2 		ENSMUST00000014848 (Hoxa2-001) 52162511-52164831 protein_coding
ENSMUSG00000029844 (Hoxa1)
homeobox A1 		ENSMUST00000000964 (Hoxa1-001) 52155590-52158317 protein_coding
ENSMUST00000120363 (Hoxa1-002) 52155595-52158317 protein_coding
ENSMUSG00000087658 (Hotairm1)
Hoxa transcript antisense RNA, myeloid-specific 1 		ENSMUST00000129546 (Hotairm1-003) 52156902-52158528 antisense
ENSMUST00000132559 (Hotairm1-001) 52158432-52162119 antisense
ENSMUST00000159006 (Hotairm1-002) 52158524-52162020 antisense
ENSMUSG00000098749 (Gm27477)
predicted gene, 27477 		ENSMUST00000184649 (Gm27477-201) 52162125-52162267 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PE_0001ENSG00000105991ENST00000343060ENST00000355633ENSG00000105996ENST00000222718ENST00000612779ENSG00000233429ENST00000425358ENST00000428939ENST00000429611ENST00000434063ENST00000495032ENST00000593300ENSG00000276528ENST00000622675ENSG00000276771ENST00000616712ENSG00000277694ENST00000619311CIL_0003PE_0002ENSMUSG00000014704ENSMUST00000014848ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006ENSMUSG00000098749ENSMUST00000184649
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PE_0001ENSG00000105991ENST00000343060ENST00000355633ENSG00000105996ENST00000222718ENST00000612779ENSG00000233429ENST00000425358ENST00000428939ENST00000429611ENST00000434063ENST00000593300ENSG00000276528ENST00000622675ENSG00000276771ENST00000616712ENSG00000277694ENST00000619311CIL_0003PE_0002ENSMUSG00000014704ENSMUST00000014848ENSMUSG00000029844ENSMUST00000000964ENSMUST00000120363ENSMUSG00000087658ENSMUST00000129546ENSMUST00000132559ENSMUST00000159006ENSMUSG00000098749ENSMUST00000184649
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105991 ENST00000343060 N/A N/A N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A 0.224±0.11 N/A N/A
ENST00000355633 0.224±0.00 0.902±0.00 0.060±0.00 0.016±0.00 0.390±0.25 0.441±0.06 0.081±0.00 N/A 0.092±0.00 N/A 0.107±0.00 0.922±0.48 0.121±0.04 0.240±0.10
ENSG00000105996 ENST00000222718 0.190±0.00 0.247±0.00 0.058±0.00 N/A 0.267±0.11 0.612±0.00 0.081±0.00 0.771±0.00 N/A 0.508±0.27 0.113±0.00 0.789±0.47 N/A 0.251±0.10
ENST00000612779 N/A 0.444±0.00 N/A N/A 0.189±0.15 0.626±0.14 N/A 0.189±0.00 0.025±0.00 0.152±0.00 N/A N/A N/A N/A
ENSG00000233429 ENST00000425358 N/A N/A N/A N/A 5.592±0.00 1.480±0.00 0.190±0.00 N/A N/A N/A N/A 0.520±0.00 0.134±0.02 N/A
ENST00000428939 N/A N/A N/A N/A 1.111±0.41 0.641±0.00 0.223±0.00 0.928±0.37 0.913±0.00 2.844±2.33 N/A 1.509±0.00 N/A 0.753±0.00
ENST00000429611 N/A N/A N/A N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434063 1.976±0.00 2.676±0.00 N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A 0.286±0.00 0.595±0.00 0.084±0.00 0.457±0.00
ENST00000495032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593300 0.600±0.00 2.790±0.00 0.237±0.00 N/A 1.416±0.60 1.111±0.00 0.179±0.00 1.941±0.00 0.380±0.00 2.977±1.89 0.428±0.00 N/A 0.175±0.03 0.880±0.00
ENSG00000276528 ENST00000622675 N/A N/A N/A N/A 60.945±0.00 N/A 25.154±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000276771 ENST00000616712 N/A N/A N/A N/A N/A 6.589±0.00 N/A N/A N/A 5.420±0.00 N/A N/A N/A 0.628±0.00
ENSG00000277694 ENST00000619311 N/A N/A 6.316±0.00 0.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.167±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014704 ENSMUST00000014848 N/A N/A N/A 4.613±3.15 N/A N/A 0.622±0.07 N/A 0.406±0.17 4.496±0.33 N/A N/A N/A N/A
ENSMUSG00000029844 ENSMUST00000000964 0.348±0.16 0.318±0.00 0.200±0.01 0.239±0.12 0.643±0.19 0.209±0.05 0.105±0.05 0.457±0.12 0.154±0.05 0.818±0.10 N/A 0.293±0.08 0.830±0.53 N/A
ENSMUST00000120363 0.252±0.09 N/A 0.176±0.01 N/A 0.763±0.48 0.259±0.00 0.069±0.03 0.230±0.04 0.137±0.13 N/A 0.092±0.03 0.310±0.13 0.361±0.28 0.043±0.02
ENSMUSG00000087658 ENSMUST00000129546 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A N/A N/A N/A N/A N/A 0.148±0.00
ENSMUST00000132559 0.957±0.00 3.147±1.54 0.443±0.02 0.219±0.14 N/A 0.231±0.00 0.127±0.05 1.672±0.43 0.243±0.12 0.877±0.00 0.155±0.05 0.881±0.26 1.076±0.61 0.158±0.09
ENSMUST00000159006 11.192±0.00 11.973±0.00 N/A 4.641±0.00 N/A N/A 1.063±0.00 9.798±1.47 0.500±0.23 13.486±0.00 1.870±0.93 10.230±0.00 31.593±18.29 1.313±1.45
ENSMUSG00000098749 ENSMUST00000184649 N/A N/A 13.908±7.12 11.007±6.07 N/A N/A N/A N/A 3.460±0.00 N/A 4.895±2.37 28.836±0.00 7.105±0.92 N/A

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