C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003QC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088930-ENSG00000125816 CGP 9606 20:21303304-21398028
GeneTranscriptPositionBiotype
ENSG00000088930 (XRN2)
5'-3' exoribonuclease 2 		ENST00000377191 (XRN2-001) 21303304-21389827 protein_coding
ENSG00000125816 (NKX2-4)
NK2 homeobox 4 		ENST00000351817 (NKX2-4-001) 21395367-21398028 protein_coding
ENSG00000225280 (RP11-227D2.3)
 ENST00000419666 (RP11-227D2.3-001) 21398893-21400391 antisense
ENST00000552439 (RP11-227D2.3-002) 21397818-21399366 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0003QC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027433-ENSMUSG00000054160 CGP 10090 2:147012996-147085445
GeneTranscriptPositionBiotype
ENSMUSG00000027433 (Xrn2)
5'-3' exoribonuclease 2 		ENSMUST00000028921 (Xrn2-001) 147012996-147078000 protein_coding
ENSMUST00000136136 (Xrn2-003) 147042546-147047822 retained_intron
ENSMUST00000137358 (Xrn2-004) 147061440-147068900 retained_intron
ENSMUST00000147057 (Xrn2-002) 147029552-147038287 retained_intron
ENSMUSG00000054160 (Nkx2-4)
NK2 homeobox 4 		ENSMUST00000067020 (Nkx2-4-001) 147083316-147085445 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003QC_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000225280ENST00000419666ENST00000552439CIL_0003QC_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000136136ENSMUST00000137358ENSMUST00000147057ENSMUSG00000054160ENSMUST00000067020
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003QC_0001ENSG00000088930ENST00000377191ENSG00000125816ENST00000351817ENSG00000225280ENST00000419666CIL_0003QC_0002ENSMUSG00000027433ENSMUST00000028921ENSMUST00000137358ENSMUST00000147057ENSMUSG00000054160ENSMUST00000067020
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088930 ENST00000377191 17.612±0.00 15.565±0.00 1.532±0.00 3.453±1.28 10.045±1.85 8.251±3.12 6.860±3.72 11.647±4.07 6.414±0.81 7.453±4.14 8.171±7.57 14.247±6.28 16.650±3.03 21.002±0.33
ENSG00000125816 ENST00000351817 N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.940±0.87
ENSG00000225280 ENST00000419666 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENST00000552439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027433 ENSMUST00000028921 7.458±1.98 2.801±0.86 15.858±1.63 15.664±7.48 6.124±1.54 4.581±1.08 3.538±0.48 5.883±0.50 9.748±5.82 7.628±1.32 3.628±0.22 11.268±10.52 18.332±6.88 11.947±1.87
ENSMUST00000136136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137358 N/A 3.904±0.29 N/A N/A N/A 8.000±1.18 N/A N/A 7.306±0.00 N/A N/A N/A N/A N/A
ENSMUST00000147057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.492±0.00 43.586±0.00 50.204±0.00
ENSMUSG00000054160 ENSMUST00000067020 0.031±0.00 N/A 0.013±0.00 0.728±0.52 0.014±0.00 N/A N/A N/A 0.004±0.00 0.018±0.01 N/A 0.027±0.00 0.030±0.01 0.765±0.61

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