C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130561-ENSG00000077044 CGP 9606 2:233307816-233472104
GeneTranscriptPositionBiotype
ENSG00000077044 (DGKD)
diacylglycerol kinase, delta 130kDa 		ENST00000264057 (DGKD-001) 233354507-233472100 protein_coding
ENST00000409813 (DGKD-010) 233388154-233472096 protein_coding
ENST00000427930 (DGKD-011) 233354508-233435894 protein_coding
ENST00000430834 (DGKD-003) 233438313-233472104 nonsense_mediated_decay
ENST00000442524 (DGKD-014) 233354572-233392399 protein_coding
ENST00000447484 (DGKD-004) 233385945-233434899 protein_coding
ENST00000465569 (DGKD-007) 233448030-233449172 retained_intron
ENST00000471764 (DGKD-008) 233458239-233459867 retained_intron
ENST00000472732 (DGKD-012) 233408891-233435924 processed_transcript
ENST00000474488 (DGKD-002) 233434467-233442591 retained_intron
ENST00000480535 (DGKD-006) 233447701-233449155 processed_transcript
ENST00000489613 (DGKD-013) 233386054-233388985 retained_intron
ENST00000490764 (DGKD-005) 233419241-233457817 retained_intron
ENST00000495901 (DGKD-009) 233463814-233467150 retained_intron
ENST00000622717 (DGKD-201) 233388154-233472096 protein_coding
ENSG00000130561 (SAG)
S-antigen; retina and pineal gland (arrestin) 		ENST00000409110 (SAG-001) 233307821-233347055 protein_coding
ENST00000412969 (SAG-005) 233307932-233347055 retained_intron
ENST00000415974 (SAG-008) 233307885-233319004 protein_coding
ENST00000447536 (SAG-007) 233307816-233327192 protein_coding
ENST00000453143 (SAG-016) 233307974-233327176 nonsense_mediated_decay
ENST00000461532 (SAG-010) 233319548-233320724 processed_transcript
ENST00000462487 (SAG-002) 233307879-233322969 processed_transcript
ENST00000469222 (SAG-006) 233327949-233346191 retained_intron
ENST00000471884 (SAG-004) 233307880-233347054 retained_intron
ENST00000473771 (SAG-012) 233334716-233340474 retained_intron
ENST00000474206 (SAG-009) 233316090-233328613 processed_transcript
ENST00000474220 (SAG-013) 233338526-233347055 retained_intron
ENST00000476500 (SAG-003) 233307816-233347054 retained_intron
ENST00000479450 (SAG-014) 233307884-233323004 processed_transcript
ENST00000483231 (SAG-011) 233331523-233346412 retained_intron
ENST00000492629 (SAG-015) 233343688-233347055 processed_transcript
ENSG00000201013 (Y_RNA)
Y RNA 		ENST00000364143 (Y_RNA.1-409) 233379843-233379955 misc_RNA
ENSG00000259793 (RP11-400N9.1)
 ENST00000563747 (RP11-400N9.1-001) 233351132-233353416 antisense
CIL_0003RA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056055-ENSMUSG00000070738 CGP 10090 1:87803680-87945180
GeneTranscriptPositionBiotype
ENSMUSG00000005501 (Usp40)
ubiquitin specific peptidase 40 		ENSMUST00000040783 (Usp40-003) 87945121-88008551 protein_coding
ENSMUST00000186315 (Usp40-004) 87985755-88008528 retained_intron
ENSMUST00000186670 (Usp40-009) 87949699-87951673 retained_intron
ENSMUST00000187758 (Usp40-001) 87946443-88008534 protein_coding
ENSMUST00000187871 (Usp40-006) 88005895-88008229 retained_intron
ENSMUST00000188332 (Usp40-002) 87946443-88008534 nonsense_mediated_decay
ENSMUST00000189409 (Usp40-007) 87945119-87975898 nonsense_mediated_decay
ENSMUST00000189586 (Usp40-005) 88005895-88008550 retained_intron
ENSMUST00000190446 (Usp40-008) 87965017-87967195 retained_intron
ENSMUSG00000056055 (Sag)
S-antigen, retina and pineal gland (arrestin) 		ENSMUST00000077772 (Sag-001) 87803680-87845158 protein_coding
ENSMUST00000128761 (Sag-003) 87803680-87835396 retained_intron
ENSMUST00000130886 (Sag-002) 87803680-87825300 retained_intron
ENSMUST00000136708 (Sag-007) 87820707-87824469 processed_transcript
ENSMUST00000144334 (Sag-008) 87812164-87824459 processed_transcript
ENSMUST00000145385 (Sag-005) 87826488-87835414 retained_intron
ENSMUST00000155393 (Sag-004) 87803680-87834910 retained_intron
ENSMUST00000156381 (Sag-006) 87803680-87817863 retained_intron
ENSMUST00000177757 (Sag-201) 87803680-87845023 protein_coding
ENSMUSG00000070738 (Dgkd)
diacylglycerol kinase, delta 		ENSMUST00000027517 (Dgkd-001) 87853287-87944490 protein_coding
ENSMUST00000185260 (Dgkd-005) 87931982-87938253 protein_coding
ENSMUST00000189448 (Dgkd-007) 87938385-87945178 protein_coding
ENSMUST00000189726 (Dgkd-006) 87935283-87940265 retained_intron
ENSMUST00000190061 (Dgkd-002) 87934397-87945180 protein_coding
ENSMUST00000190243 (Dgkd-003) 87880435-87915744 retained_intron
ENSMUST00000191589 (Dgkd-004) 87917898-87921971 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RA_0001ENSG00000077044ENST00000264057ENST00000409813ENST00000430834ENST00000447484ENST00000474488ENST00000490764ENST00000495901ENST00000622717ENSG00000130561ENST00000409110ENST00000412969ENST00000469222ENST00000474206ENST00000474220ENST00000476500ENST00000492629ENSG00000201013ENST00000364143ENSG00000259793ENST00000563747CIL_0003RA_0002ENSMUSG00000005501ENSMUST00000040783ENSMUST00000187758ENSMUST00000189409ENSMUSG00000056055ENSMUST00000077772ENSMUST00000128761ENSMUST00000130886ENSMUST00000136708ENSMUST00000144334ENSMUST00000145385ENSMUST00000155393ENSMUST00000177757ENSMUSG00000070738ENSMUST00000027517ENSMUST00000190061
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077044 ENST00000264057 0.951±0.00 1.826±0.00 0.256±0.00 0.777±0.06 0.964±0.52 1.793±0.47 0.697±0.47 0.766±0.49 0.796±0.35 1.677±0.00 2.408±0.00 3.488±0.62 5.365±2.11 7.399±2.32
ENST00000409813 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.627±0.00 0.937±0.00 1.198±0.00 N/A N/A
ENST00000427930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430834 N/A N/A N/A N/A 0.542±0.00 0.625±0.00 N/A 0.477±0.00 N/A 5.016±0.00 4.215±0.99 2.966±0.55 2.403±0.00 5.405±0.00
ENST00000442524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447484 N/A N/A N/A N/A N/A N/A N/A 1.991±0.00 N/A N/A N/A N/A N/A N/A
ENST00000465569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474488 N/A N/A N/A N/A N/A N/A N/A 0.713±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490764 N/A N/A N/A 0.977±0.43 N/A N/A 0.508±0.00 N/A N/A N/A N/A 0.993±0.00 N/A N/A
ENST00000495901 N/A N/A N/A N/A N/A N/A N/A 1.798±0.00 N/A N/A N/A N/A N/A N/A
ENST00000622717 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A 1.242±0.00 N/A N/A
ENSG00000130561 ENST00000409110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.388±0.00
ENST00000412969 N/A N/A N/A 0.039±0.00 N/A 0.081±0.00 N/A 0.060±0.00 0.020±0.00 0.119±0.09 0.051±0.02 0.031±0.02 0.029±0.00 N/A
ENST00000415974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469222 0.102±0.00 0.216±0.00 N/A 0.242±0.00 0.132±0.00 0.067±0.00 0.042±0.00 0.190±0.00 0.029±0.00 0.062±0.00 0.044±0.00 0.018±0.01 N/A 0.379±0.18
ENST00000471884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A
ENST00000474220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.211±0.00 1.227±0.00
ENST00000476500 0.040±0.00 0.159±0.00 N/A 0.052±0.00 0.066±0.04 0.019±0.00 0.020±0.00 0.094±0.00 0.064±0.00 0.024±0.00 0.007±0.00 0.012±0.00 0.007±0.00 0.133±0.00
ENST00000479450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.24 N/A
ENSG00000201013 ENST00000364143 N/A 0.757±0.00 N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A 0.670±0.00 N/A 0.637±0.00
ENSG00000259793 ENST00000563747 N/A 0.323±0.00 0.019±0.00 0.079±0.01 0.114±0.07 0.040±0.03 0.026±0.02 0.088±0.07 0.039±0.00 0.170±0.00 0.007±0.00 0.048±0.03 0.185±0.00 0.268±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005501 ENSMUST00000040783 7.792±1.06 N/A N/A 5.615±0.70 N/A N/A 3.944±0.48 5.065±0.71 3.115±0.76 6.248±0.09 2.948±0.00 6.212±0.47 N/A N/A
ENSMUST00000186315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.842±0.00 6.309±0.00 3.742±0.00
ENSMUST00000187871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189409 5.106±0.00 5.019±0.80 4.529±1.19 5.887±0.22 N/A N/A N/A N/A 2.176±0.44 N/A N/A 6.762±1.53 N/A N/A
ENSMUST00000189586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000056055 ENSMUST00000077772 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A 0.063±0.00 N/A 0.057±0.01 0.460±0.00 N/A N/A
ENSMUST00000128761 0.290±0.00 0.202±0.06 N/A 0.133±0.00 0.132±0.08 0.184±0.01 0.132±0.04 0.217±0.00 0.094±0.04 0.248±0.06 0.051±0.03 0.235±0.08 0.059±0.00 N/A
ENSMUST00000130886 N/A 0.136±0.03 0.181±0.00 0.448±0.00 0.129±0.05 0.059±0.00 0.093±0.00 0.116±0.00 0.167±0.14 N/A 0.069±0.04 0.322±0.19 0.348±0.16 N/A
ENSMUST00000136708 N/A N/A N/A 1.161±0.00 N/A 0.176±0.00 0.090±0.00 N/A N/A N/A 0.089±0.00 0.346±0.00 0.488±0.00 N/A
ENSMUST00000144334 N/A 0.302±0.00 N/A N/A 0.089±0.00 N/A N/A N/A N/A 0.231±0.00 0.116±0.00 N/A N/A N/A
ENSMUST00000145385 N/A 0.185±0.05 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155393 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A
ENSMUST00000156381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177757 N/A 0.417±0.14 N/A N/A 0.142±0.01 N/A N/A N/A N/A N/A 0.041±0.00 0.169±0.07 N/A N/A
ENSMUSG00000070738 ENSMUST00000027517 27.053±5.17 12.376±3.56 8.276±0.93 18.994±1.99 32.597±3.90 18.391±3.20 9.863±0.47 13.450±0.67 5.104±1.81 20.961±2.06 7.765±0.37 17.201±2.15 13.657±3.86 28.454±9.89
ENSMUST00000185260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190061 N/A N/A 2.877±0.00 N/A 10.450±0.00 8.608±0.56 N/A 4.305±0.00 1.981±0.22 N/A N/A N/A N/A N/A
ENSMUST00000190243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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