C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125503-ENSG00000105048 CGP 9606 19:55090913-55149354
GeneTranscriptPositionBiotype
ENSG00000105048 (TNNT1)
troponin T type 1 (skeletal, slow) 		ENST00000291901 (TNNT1-003) 55132794-55149206 protein_coding
ENST00000356783 (TNNT1-001) 55132794-55149206 protein_coding
ENST00000536926 (TNNT1-201) 55132832-55149206 protein_coding
ENST00000585321 (TNNT1-011) 55132865-55146942 protein_coding
ENST00000586282 (TNNT1-006) 55145400-55149206 retained_intron
ENST00000586649 (TNNT1-018) 55132950-55137177 protein_coding
ENST00000587089 (TNNT1-014) 55132876-55146454 nonsense_mediated_decay
ENST00000587465 (TNNT1-012) 55132835-55146949 protein_coding
ENST00000587758 (TNNT1-005) 55132794-55149193 protein_coding
ENST00000588147 (TNNT1-004) 55138018-55149206 protein_coding
ENST00000588426 (TNNT1-007) 55132794-55149206 protein_coding
ENST00000588981 (TNNT1-002) 55132794-55149354 protein_coding
ENST00000589226 (TNNT1-010) 55137976-55147308 protein_coding
ENST00000589745 (TNNT1-016) 55132828-55140922 protein_coding
ENST00000592920 (TNNT1-008) 55138005-55149206 processed_transcript
ENST00000593046 (TNNT1-009) 55137103-55147346 protein_coding
ENST00000593194 (TNNT1-015) 55132826-55141891 protein_coding
ENSG00000125503 (PPP1R12C)
protein phosphatase 1, regulatory subunit 12C 		ENST00000263433 (PPP1R12C-001) 55090913-55117559 protein_coding
ENST00000435544 (PPP1R12C-002) 55091361-55113618 protein_coding
ENST00000586197 (PPP1R12C-007) 55096077-55097064 retained_intron
ENST00000586992 (PPP1R12C-004) 55111376-55115516 retained_intron
ENST00000588277 (PPP1R12C-008) 55092790-55094694 retained_intron
ENST00000590268 (PPP1R12C-009) 55091208-55092598 retained_intron
ENST00000591938 (PPP1R12C-003) 55090914-55094796 protein_coding
ENST00000592754 (PPP1R12C-005) 55092776-55095161 retained_intron
ENST00000592993 (PPP1R12C-006) 55091416-55117413 protein_coding
ENSG00000267507 (CTD-2587H24.1)
 ENST00000587647 (CTD-2587H24.1-001) 55119250-55120383 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003RJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019254-ENSMUSG00000064179 CGP 10090 7:4481520-4516382
GeneTranscriptPositionBiotype
ENSMUSG00000019254 (Ppp1r12c)
protein phosphatase 1, regulatory (inhibitor) subunit 12C 		ENSMUST00000013886 (Ppp1r12c-001) 4481520-4501680 protein_coding
ENSMUST00000124248 (Ppp1r12c-004) 4481520-4501361 protein_coding
ENSMUST00000125220 (Ppp1r12c-002) 4489811-4501529 processed_transcript
ENSMUST00000127329 (Ppp1r12c-010) 4481523-4484032 retained_intron
ENSMUST00000128857 (Ppp1r12c-011) 4481799-4483034 processed_transcript
ENSMUST00000133374 (Ppp1r12c-008) 4483940-4485314 retained_intron
ENSMUST00000134738 (Ppp1r12c-009) 4483634-4484499 retained_intron
ENSMUST00000136863 (Ppp1r12c-007) 4484017-4485708 retained_intron
ENSMUST00000145689 (Ppp1r12c-003) 4489172-4501664 retained_intron
ENSMUST00000147679 (Ppp1r12c-005) 4486151-4486735 retained_intron
ENSMUST00000153101 (Ppp1r12c-012) 4481588-4482634 processed_transcript
ENSMUST00000154710 (Ppp1r12c-006) 4485206-4485932 retained_intron
ENSMUSG00000064179 (Tnnt1)
troponin T1, skeletal, slow 		ENSMUST00000071798 (Tnnt1-001) 4504570-4515975 protein_coding
ENSMUST00000086502 (Tnnt1-012) 4504786-4508025 processed_transcript
ENSMUST00000108587 (Tnnt1-002) 4504570-4516004 protein_coding
ENSMUST00000163538 (Tnnt1-010) 4508578-4514574 protein_coding
ENSMUST00000163560 (Tnnt1-009) 4513829-4515107 protein_coding
ENSMUST00000163710 (Tnnt1-003) 4504663-4515959 protein_coding
ENSMUST00000163722 (Tnnt1-005) 4509610-4516382 protein_coding
ENSMUST00000166161 (Tnnt1-004) 4504755-4514368 protein_coding
ENSMUST00000166268 (Tnnt1-011) 4507568-4515961 protein_coding
ENSMUST00000166959 (Tnnt1-006) 4508510-4514615 protein_coding
ENSMUST00000168111 (Tnnt1-007) 4504784-4509938 retained_intron
ENSMUST00000169571 (Tnnt1-008) 4507600-4509798 retained_intron
ENSMUST00000178163 (Tnnt1-201) 4504663-4515975 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RJ_0001ENSG00000105048ENST00000291901ENST00000356783ENST00000536926ENST00000585321ENST00000586282ENST00000586649ENST00000587089ENST00000587465ENST00000587758ENST00000588147ENST00000588426ENST00000588981ENST00000589226ENST00000589745ENST00000592920ENST00000593046ENST00000593194ENSG00000125503ENST00000263433ENST00000435544ENST00000586197ENST00000586992ENST00000588277ENST00000590268ENST00000591938ENST00000592754ENST00000592993ENSG00000267507ENST00000587647CIL_0003RJ_0002ENSMUSG00000019254ENSMUST00000013886ENSMUST00000124248ENSMUST00000125220ENSMUST00000127329ENSMUST00000128857ENSMUST00000133374ENSMUST00000134738ENSMUST00000136863ENSMUST00000145689ENSMUST00000147679ENSMUST00000153101ENSMUST00000154710ENSMUSG00000064179ENSMUST00000071798ENSMUST00000086502ENSMUST00000108587ENSMUST00000163538ENSMUST00000163560ENSMUST00000163710ENSMUST00000163722ENSMUST00000166161ENSMUST00000166268ENSMUST00000166959ENSMUST00000168111ENSMUST00000169571ENSMUST00000178163
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RJ_0001ENSG00000105048ENST00000291901ENST00000356783ENST00000585321ENST00000586649ENST00000587089ENST00000587465ENST00000587758ENST00000588147ENST00000589226ENST00000589745ENST00000592920ENST00000593046ENST00000593194ENSG00000125503ENST00000263433ENST00000586992ENST00000591938ENST00000592754ENST00000592993ENSG00000267507ENST00000587647CIL_0003RJ_0002ENSMUSG00000019254ENSMUST00000013886ENSMUST00000124248ENSMUST00000125220ENSMUST00000128857ENSMUST00000145689ENSMUST00000153101ENSMUSG00000064179ENSMUST00000071798ENSMUST00000086502ENSMUST00000108587ENSMUST00000163538ENSMUST00000163560ENSMUST00000163710ENSMUST00000166161ENSMUST00000166268ENSMUST00000166959ENSMUST00000168111ENSMUST00000169571ENSMUST00000178163
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105048 ENST00000291901 N/A N/A N/A N/A 35.379±34.06 N/A 0.758±0.00 N/A 0.495±0.00 N/A 761.522±110.24 0.659±0.00 N/A 47.249±0.00
ENST00000356783 N/A N/A 0.154±0.00 N/A 31.420±0.00 0.471±0.00 N/A N/A N/A N/A 519.551±0.00 N/A N/A 49.350±0.00
ENST00000536926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585321 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.968±0.00 2.700±0.00 N/A
ENST00000586282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586649 0.375±0.00 N/A 0.538±0.00 N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A
ENST00000587089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.019±0.00
ENST00000587465 N/A 0.131±0.00 N/A N/A N/A 0.339±0.00 N/A N/A N/A N/A N/A 3.855±3.65 3.646±0.00 N/A
ENST00000587758 0.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588147 N/A N/A N/A N/A N/A 0.097±0.00 N/A 0.249±0.12 N/A N/A N/A N/A 15.290±0.00 6.466±0.00
ENST00000588426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589226 0.174±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.730±0.00 N/A N/A
ENST00000589745 N/A 0.697±0.00 N/A 7.946±5.16 N/A 0.381±0.00 N/A N/A 2.477±2.32 0.685±0.00 977.775±0.00 1.748±0.00 N/A N/A
ENST00000592920 N/A 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A
ENST00000593046 N/A N/A N/A N/A 0.829±0.00 0.256±0.00 0.334±0.00 N/A 0.653±0.00 N/A N/A 0.621±0.00 7.122±0.00 N/A
ENST00000593194 N/A N/A N/A 1.656±0.00 93.775±0.00 0.344±0.00 N/A N/A N/A N/A 729.438±0.00 1.771±0.00 9.752±10.27 63.187±60.03
ENSG00000125503 ENST00000263433 8.892±0.00 38.683±0.00 N/A 21.618±0.00 23.092±0.00 55.764±0.00 30.255±0.00 19.475±0.00 3.212±1.53 N/A N/A 24.330±11.75 5.930±0.66 38.032±15.29
ENST00000435544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586992 N/A N/A N/A N/A 0.430±0.00 N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A N/A
ENST00000588277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591938 12.754±0.00 N/A N/A 18.536±0.00 N/A N/A 28.772±0.00 21.351±0.00 4.740±2.90 20.684±0.00 4.548±0.00 18.842±4.75 18.755±1.55 44.475±0.00
ENST00000592754 N/A N/A 1.469±0.00 N/A 2.594±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592993 N/A N/A 1.339±0.00 N/A 0.760±0.00 10.871±8.05 5.809±5.14 6.764±0.00 1.879±0.00 2.165±0.00 2.522±0.00 14.973±11.85 16.050±10.12 137.871±0.00
ENSG00000267507 ENST00000587647 N/A 0.074±0.00 N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A 3.907±0.00 0.089±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019254 ENSMUST00000013886 15.222±7.98 9.681±2.11 21.862±7.37 9.170±2.26 7.209±2.73 20.293±3.47 4.078±1.54 4.270±0.92 3.857±2.10 13.187±3.72 4.156±1.19 7.747±3.28 6.913±1.47 6.979±0.51
ENSMUST00000124248 8.309±1.97 5.235±0.64 12.189±3.14 23.833±20.25 6.201±1.47 N/A 6.309±0.82 4.359±0.79 2.807±1.07 10.920±1.42 3.418±1.42 11.638±8.30 19.417±11.49 7.436±2.37
ENSMUST00000125220 N/A 21.763±9.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128857 N/A N/A N/A 104.898±0.00 N/A N/A N/A N/A 10.338±0.00 N/A 4.715±0.00 99.781±0.00 55.858±8.38 32.762±0.00
ENSMUST00000133374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145689 18.946±3.20 13.164±1.86 N/A 6.421±0.00 8.511±2.92 16.089±4.77 3.889±0.89 2.980±0.18 1.918±0.54 14.696±3.74 N/A 15.262±4.50 N/A 5.112±0.39
ENSMUST00000147679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153101 N/A N/A N/A 104.398±0.00 N/A N/A N/A 7.149±0.00 N/A N/A 5.255±0.00 74.205±41.78 107.242±28.06 139.211±0.00
ENSMUST00000154710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064179 ENSMUST00000071798 N/A N/A N/A 0.406±0.00 N/A N/A 1.239±0.41 0.914±0.11 3.182±0.00 0.118±0.05 107.393±67.91 0.590±0.38 N/A N/A
ENSMUST00000086502 0.136±0.04 0.618±0.25 N/A 0.615±0.00 0.317±0.11 0.607±0.30 N/A 0.146±0.07 0.361±0.27 0.885±0.69 N/A 2.688±1.64 0.563±0.00 0.234±0.15
ENSMUST00000108587 N/A N/A 0.461±0.00 0.309±0.08 0.152±0.00 N/A 1.114±0.02 0.754±0.07 2.003±0.00 0.075±0.00 67.430±46.59 1.146±0.81 N/A 0.148±0.00
ENSMUST00000163538 0.119±0.01 0.313±0.21 0.579±0.00 37.323±0.00 0.248±0.18 0.245±0.05 1.014±0.04 0.827±0.00 N/A 0.386±0.00 N/A 1.987±3.07 N/A 0.148±0.00
ENSMUST00000163560 1.370±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163710 N/A N/A 1.016±0.25 3.713±4.80 0.430±0.25 0.320±0.00 N/A N/A 0.604±0.44 N/A 30.284±16.30 3.325±2.13 2.496±1.56 0.261±0.06
ENSMUST00000163722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166161 N/A N/A 0.819±0.07 21.907±0.00 0.384±0.16 0.627±0.00 N/A 0.867±0.00 0.587±0.38 0.219±0.00 24.459±17.11 N/A 11.370±15.73 N/A
ENSMUST00000166268 N/A N/A N/A 0.375±0.00 N/A 0.216±0.00 N/A 0.326±0.11 1.344±1.13 N/A N/A 1.632±1.31 N/A N/A
ENSMUST00000166959 0.971±0.00 N/A 1.174±0.00 0.273±0.00 N/A N/A 2.125±0.42 0.311±0.21 N/A 0.322±0.05 N/A 0.334±0.07 N/A 0.284±0.12
ENSMUST00000168111 N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A 0.067±0.00 N/A N/A 0.372±0.00 0.382±0.00 N/A
ENSMUST00000169571 0.132±0.00 0.568±0.00 N/A N/A N/A 0.404±0.18 N/A 0.325±0.26 1.362±0.61 N/A N/A 0.812±0.00 5.175±4.94 N/A
ENSMUST00000178163 N/A N/A N/A N/A N/A N/A N/A N/A 0.653±0.00 N/A N/A N/A N/A N/A

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