C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108239-ENSG00000119969 CGP 9606 10:94402504-94613905
GeneTranscriptPositionBiotype
ENSG00000108239 (TBC1D12)
TBC1 domain family, member 12 		ENST00000225235 (TBC1D12-001) 94402504-94535930 protein_coding
ENST00000457045 (TBC1D12-004) 94534339-94535928 processed_transcript
ENST00000485048 (TBC1D12-003) 94508442-94533297 processed_transcript
ENSG00000119969 (HELLS)
helicase, lymphoid-specific 		ENST00000239026 (HELLS-201) 94501434-94602098 protein_coding
ENST00000348459 (HELLS-001) 94545817-94602099 protein_coding
ENST00000371327 (HELLS-002) 94590699-94613905 protein_coding
ENST00000371332 (HELLS-202) 94501434-94602098 protein_coding
ENST00000394036 (HELLS-203) 94545922-94602098 protein_coding
ENST00000394045 (HELLS-204) 94545922-94602098 protein_coding
ENST00000419900 (HELLS-003) 94545790-94574106 protein_coding
ENST00000462057 (HELLS-004) 94554124-94571280 processed_transcript
ENST00000464030 (HELLS-006) 94590742-94592514 retained_intron
ENST00000466552 (HELLS-005) 94569195-94574448 retained_intron
ENST00000475263 (HELLS-007) 94596880-94601971 retained_intron
ENSG00000244332 (RP11-119K6.6)
 ENST00000432120 (RP11-119K6.6-001) 94577439-94611238 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0003RX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048720-ENSMUSG00000025001 CGP 10090 19:38836579-38971051
GeneTranscriptPositionBiotype
ENSMUSG00000025001 (Hells)
helicase, lymphoid specific 		ENSMUST00000025965 (Hells-001) 38930915-38971051 protein_coding
ENSMUST00000127968 (Hells-005) 38943689-38950475 processed_transcript
ENSMUST00000128949 (Hells-002) 38934508-38940601 retained_intron
ENSMUST00000138292 (Hells-004) 38931030-38940500 retained_intron
ENSMUST00000145051 (Hells-003) 38931174-38943914 protein_coding
ENSMUST00000155465 (Hells-006) 38931390-38953609 processed_transcript
ENSMUSG00000048720 (Tbc1d12)
TBC1D12: TBC1 domain family, member 12 		ENSMUST00000037302 (Tbc1d12-201) 38836579-38919923 protein_coding
ENSMUSG00000089545 (Gm25838)
predicted gene, 25838 		ENSMUST00000158920 (Gm25838-201) 38885242-38885361 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RX_0001ENSG00000108239ENST00000225235ENST00000457045ENST00000485048ENSG00000119969ENST00000239026ENST00000348459ENST00000371327ENST00000371332ENST00000394036ENST00000394045ENST00000419900ENST00000462057ENST00000464030ENST00000466552ENST00000475263ENSG00000244332ENST00000432120CIL_0003RX_0002ENSMUSG00000025001ENSMUST00000025965ENSMUST00000127968ENSMUST00000128949ENSMUST00000138292ENSMUST00000145051ENSMUST00000155465ENSMUSG00000048720ENSMUST00000037302ENSMUSG00000089545ENSMUST00000158920
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RX_0001ENSG00000108239ENST00000225235ENST00000485048ENSG00000119969ENST00000239026ENST00000348459ENST00000371327ENST00000371332ENST00000394045ENST00000419900ENST00000466552ENST00000475263ENSG00000244332ENST00000432120CIL_0003RX_0002ENSMUSG00000025001ENSMUST00000025965ENSMUST00000127968ENSMUST00000128949ENSMUST00000138292ENSMUST00000145051ENSMUSG00000048720ENSMUST00000037302ENSMUSG00000089545ENSMUST00000158920
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108239 ENST00000225235 2.739±0.00 1.328±0.00 N/A 5.725±0.59 3.021±0.45 2.779±0.53 0.954±0.17 0.726±0.00 1.286±0.77 2.191±0.93 1.127±0.47 1.911±0.40 1.241±0.68 6.429±1.81
ENST00000457045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485048 N/A N/A 1.622±0.00 N/A 2.275±0.00 1.311±0.00 0.586±0.00 0.908±0.00 1.608±0.00 N/A 1.109±0.00 1.856±0.00 N/A N/A
ENSG00000119969 ENST00000239026 0.083±0.00 N/A N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000348459 0.078±0.00 0.678±0.00 0.431±0.00 N/A 0.629±0.34 N/A N/A 0.203±0.00 1.172±0.00 N/A 0.097±0.00 3.050±2.69 0.860±0.76 5.047±0.02
ENST00000371327 N/A 0.618±0.00 N/A 0.178±0.11 0.128±0.00 0.028±0.00 0.086±0.00 0.201±0.00 0.085±0.00 0.265±0.16 0.033±0.00 1.632±1.29 0.335±0.19 2.794±1.09
ENST00000371332 N/A N/A N/A N/A N/A N/A N/A 0.694±0.00 N/A N/A N/A N/A N/A N/A
ENST00000394036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.398±0.00 N/A
ENST00000419900 N/A N/A 0.987±0.00 N/A N/A N/A 0.138±0.00 0.632±0.00 0.214±0.00 N/A N/A 3.287±0.00 1.601±0.00 N/A
ENST00000462057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466552 N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A
ENST00000475263 N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244332 ENST00000432120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025001 ENSMUST00000025965 0.817±0.50 0.638±0.25 0.338±0.12 2.226±1.73 0.544±0.30 1.073±0.36 0.044±0.01 0.113±0.04 3.601±4.35 0.324±0.02 0.040±0.03 1.849±0.71 3.479±2.26 2.179±0.35
ENSMUST00000127968 N/A N/A N/A N/A 0.750±0.00 N/A 0.063±0.01 0.128±0.07 N/A 0.224±0.00 0.127±0.06 7.476±0.00 8.510±10.63 6.703±0.00
ENSMUST00000128949 N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138292 0.302±0.00 0.319±0.18 N/A N/A N/A 0.291±0.00 0.079±0.01 0.230±0.00 0.069±0.02 N/A N/A 0.592±0.30 N/A N/A
ENSMUST00000145051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.544±0.00
ENSMUST00000155465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000048720 ENSMUST00000037302 2.927±0.99 4.089±1.45 2.465±0.20 3.857±1.03 2.543±1.77 2.456±0.87 1.182±0.16 1.954±0.79 1.753±0.38 2.786±0.79 0.505±0.23 4.852±1.63 1.652±0.15 2.810±1.06
ENSMUSG00000089545 ENSMUST00000158920 N/A N/A N/A 8.127±0.00 N/A N/A N/A N/A 1162.310±0.00 N/A N/A N/A 9.108±0.00 N/A

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