C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132953-ENSG00000150457 CGP 9606 13:20777329-21061547
GeneTranscriptPositionBiotype
ENSG00000132953 (XPO4)
exportin 4 		ENST00000255305 (XPO4-001) 20777329-20902810 protein_coding
ENST00000400602 (XPO4-201) 20777330-20902774 protein_coding
ENST00000465018 (XPO4-003) 20868413-20902747 processed_transcript
ENST00000490513 (XPO4-002) 20855634-20903048 processed_transcript
ENSG00000150457 (LATS2)
large tumor suppressor kinase 2 		ENST00000382592 (LATS2-001) 20973032-21061547 protein_coding
ENST00000472754 (LATS2-003) 20989010-21023129 processed_transcript
ENSG00000213621 (RPSAP54)
ribosomal protein SA pseudogene 54 		ENST00000454001 (RPSAP54-001) 20961310-20962195 processed_pseudogene
ENSG00000233780 (HNRNPA1P30)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 		ENST00000424329 (HNRNPA1P30-002) 20938564-20949428 processed_transcript
ENST00000440699 (HNRNPA1P30-001) 20948294-20949599 transcribed_processed_pseudogene
ENSG00000233851 (LATS2-AS1)
LATS2 antisense RNA 1 		ENST00000422510 (LATS2-AS1-001) 21005157-21018122 antisense
ENSG00000236704 (CNOT4P1)
CCR4-NOT transcription complex, subunit 4 pseudogene 1 		ENST00000417432 (CNOT4P1-001) 20921664-20923233 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003SQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021952-ENSMUSG00000021959 CGP 10090 14:57581002-57758388
GeneTranscriptPositionBiotype
ENSMUSG00000021952 (Xpo4)
exportin 4 		ENSMUST00000089482 (Xpo4-201) 57582271-57664956 protein_coding
ENSMUST00000172524 (Xpo4-003) 57642029-57665430 nonsense_mediated_decay
ENSMUST00000172539 (Xpo4-008) 57641779-57664964 processed_transcript
ENSMUST00000172647 (Xpo4-007) 57642516-57648657 retained_intron
ENSMUST00000173172 (Xpo4-005) 57641800-57664967 retained_intron
ENSMUST00000173638 (Xpo4-006) 57647962-57664989 retained_intron
ENSMUST00000173940 (Xpo4-004) 57641785-57665235 retained_intron
ENSMUST00000174152 (Xpo4-002) 57596990-57664992 nonsense_mediated_decay
ENSMUST00000174424 (Xpo4-009) 57629448-57664956 nonsense_mediated_decay
ENSMUST00000174545 (Xpo4-001) 57581002-57665430 protein_coding
ENSMUSG00000021959 (Lats2)
large tumor suppressor 2 		ENSMUST00000022531 (Lats2-001) 57689662-57746123 protein_coding
ENSMUST00000038381 (Lats2-005) 57722189-57734300 protein_coding
ENSMUST00000077981 (Lats2-006) 57722189-57734300 protein_coding
ENSMUST00000173077 (Lats2-008) 57734253-57746578 processed_transcript
ENSMUST00000173732 (Lats2-009) 57734180-57744654 protein_coding
ENSMUST00000173964 (Lats2-010) 57697227-57699890 protein_coding
ENSMUST00000173990 (Lats2-003) 57693544-57746105 protein_coding
ENSMUST00000174166 (Lats2-007) 57703051-57758388 protein_coding
ENSMUST00000174213 (Lats2-002) 57691098-57746121 nonsense_mediated_decay
ENSMUST00000174694 (Lats2-004) 57642077-57746103 nonsense_mediated_decay
ENSMUSG00000064525 (Gm26440)
predicted gene, 26440 		ENSMUST00000082591 (Gm26440-201) 57697809-57697937 snoRNA
ENSMUSG00000092358 (Gm20430)
predicted gene 20430 		ENSMUST00000172474 (Gm20430-001) 57698013-57698219 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SQ_0001ENSG00000132953ENST00000255305ENST00000400602ENST00000465018ENST00000490513ENSG00000150457ENST00000382592ENST00000472754ENSG00000213621ENST00000454001ENSG00000233780ENST00000424329ENST00000440699ENSG00000233851ENST00000422510ENSG00000236704ENST00000417432CIL_0003SQ_0002ENSMUSG00000021952ENSMUST00000089482ENSMUST00000172524ENSMUST00000172539ENSMUST00000172647ENSMUST00000173172ENSMUST00000173638ENSMUST00000173940ENSMUST00000174152ENSMUST00000174424ENSMUST00000174545ENSMUSG00000021959ENSMUST00000022531ENSMUST00000038381ENSMUST00000077981ENSMUST00000173077ENSMUST00000173732ENSMUST00000173964ENSMUST00000173990ENSMUST00000174166ENSMUST00000174213ENSMUST00000174694ENSMUSG00000064525ENSMUST00000082591ENSMUSG00000092358ENSMUST00000172474
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SQ_0001ENSG00000132953ENST00000255305ENST00000400602ENSG00000150457ENST00000382592ENSG00000213621ENST00000454001ENSG00000233780ENST00000424329ENST00000440699ENSG00000233851ENST00000422510ENSG00000236704ENST00000417432CIL_0003SQ_0002ENSMUSG00000021952ENSMUST00000089482ENSMUST00000174545ENSMUSG00000021959ENSMUST00000022531ENSMUST00000173990ENSMUST00000174213ENSMUST00000174694ENSMUSG00000064525ENSMUST00000082591ENSMUSG00000092358ENSMUST00000172474
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132953 ENST00000255305 N/A 1.698±0.00 1.089±0.00 0.410±0.10 1.940±0.00 N/A 0.411±0.00 1.445±0.47 0.792±0.00 0.445±0.00 3.620±2.30 1.011±0.30 0.930±0.09 1.949±0.18
ENST00000400602 1.787±0.00 N/A N/A 0.351±0.00 2.578±0.00 N/A N/A N/A 0.787±0.00 0.983±0.25 N/A 0.876±0.41 N/A N/A
ENST00000465018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000150457 ENST00000382592 13.193±0.00 2.958±0.00 1.593±0.00 0.790±0.47 4.721±0.00 3.650±2.18 3.071±1.85 1.720±0.80 2.196±1.70 5.108±0.00 3.118±1.57 3.932±3.37 4.290±1.17 7.915±0.52
ENST00000472754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213621 ENST00000454001 0.387±0.00 0.865±0.00 N/A 0.292±0.00 0.181±0.12 0.392±0.00 0.130±0.00 0.210±0.00 0.129±0.00 0.655±0.00 0.105±0.00 0.177±0.12 0.131±0.01 0.162±0.12
ENSG00000233780 ENST00000424329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00
ENST00000440699 0.052±0.00 0.055±0.00 N/A 0.014±0.00 0.055±0.00 N/A N/A 0.139±0.00 N/A 0.122±0.00 N/A N/A N/A 0.073±0.06
ENSG00000233851 ENST00000422510 N/A 0.024±0.00 N/A N/A 0.384±0.00 N/A 0.101±0.03 N/A N/A 0.258±0.00 N/A 0.051±0.02 N/A 0.055±0.01
ENSG00000236704 ENST00000417432 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A 0.058±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021952 ENSMUST00000089482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.546±0.00
ENSMUST00000172524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174545 5.263±0.00 N/A 2.730±0.00 0.993±0.00 2.749±0.20 N/A 2.630±0.00 2.320±0.15 1.359±0.29 N/A N/A N/A 2.484±0.79 N/A
ENSMUSG00000021959 ENSMUST00000022531 14.154±1.27 24.088±7.55 15.959±0.57 3.947±0.70 16.936±6.18 11.152±3.95 8.130±0.55 15.762±3.17 3.356±0.75 45.644±6.79 3.644±0.51 25.131±8.75 8.362±4.16 20.080±8.58
ENSMUST00000038381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000077981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.478±0.00 N/A 3.281±0.00
ENSMUST00000174166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174213 6.313±0.73 5.806±1.44 N/A N/A 5.964±0.22 6.626±1.35 N/A 6.374±1.52 1.118±0.00 9.021±0.00 N/A 10.062±4.15 N/A 28.494±3.39
ENSMUST00000174694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.351±0.27 N/A 5.953±0.00
ENSMUSG00000064525 ENSMUST00000082591 546.762±0.00 N/A N/A N/A N/A N/A N/A N/A 11.362±1.91 672.635±0.00 3.487±0.00 8.120±0.00 9.276±6.57 N/A
ENSMUSG00000092358 ENSMUST00000172474 2.969±0.28 N/A 2.212±0.20 0.283±0.00 N/A 3.156±0.00 2.872±0.00 2.077±0.76 1.688±2.00 2.676±0.48 0.614±0.12 3.300±0.93 4.838±3.24 1.345±0.03

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