C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003SX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000092140-ENSG00000092108 CGP 9606 14:30559123-30735812
GeneTranscriptPositionBiotype
ENSG00000092108 (SCFD1)
sec1 family domain containing 1 		ENST00000311943 (SCFD1-009) 30622327-30735772 nonsense_mediated_decay
ENST00000396629 (SCFD1-010) 30622332-30735791 protein_coding
ENST00000458591 (SCFD1-006) 30622112-30735812 protein_coding
ENST00000463622 (SCFD1-008) 30622319-30735692 nonsense_mediated_decay
ENST00000469043 (SCFD1-001) 30639777-30658358 protein_coding
ENST00000484733 (SCFD1-002) 30622319-30735799 nonsense_mediated_decay
ENST00000544052 (SCFD1-004) 30622319-30735789 protein_coding
ENST00000553278 (SCFD1-018) 30669763-30673994 retained_intron
ENST00000553280 (SCFD1-025) 30734494-30735794 retained_intron
ENST00000553693 (SCFD1-015) 30622329-30650626 protein_coding
ENST00000554437 (SCFD1-022) 30705824-30735799 nonsense_mediated_decay
ENST00000554486 (SCFD1-019) 30676126-30705885 processed_transcript
ENST00000554776 (SCFD1-026) 30628209-30653588 nonsense_mediated_decay
ENST00000554819 (SCFD1-017) 30652338-30694858 processed_transcript
ENST00000555259 (SCFD1-005) 30622311-30715970 nonsense_mediated_decay
ENST00000555550 (SCFD1-023) 30721726-30722842 retained_intron
ENST00000555953 (SCFD1-021) 30673273-30675331 retained_intron
ENST00000556256 (SCFD1-024) 30721702-30735662 retained_intron
ENST00000556413 (SCFD1-016) 30628209-30630917 retained_intron
ENST00000556486 (SCFD1-012) 30715298-30735657 retained_intron
ENST00000556534 (SCFD1-020) 30638197-30653981 retained_intron
ENST00000556768 (SCFD1-007) 30622319-30735791 nonsense_mediated_decay
ENST00000557076 (SCFD1-014) 30622328-30649583 protein_coding
ENST00000557713 (SCFD1-013) 30622320-30638173 nonsense_mediated_decay
ENSG00000092140 (G2E3)
G2/M-phase specific E3 ubiquitin protein ligase 		ENST00000206595 (G2E3-001) 30559123-30620063 protein_coding
ENST00000438909 (G2E3-004) 30559158-30616669 protein_coding
ENST00000544007 (G2E3-003) 30559158-30607919 processed_transcript
ENST00000547532 (G2E3-012) 30577756-30593639 protein_coding
ENST00000547638 (G2E3-010) 30602747-30608002 processed_transcript
ENST00000548934 (G2E3-009) 30598558-30615515 nonsense_mediated_decay
ENST00000549159 (G2E3-005) 30611302-30618232 retained_intron
ENST00000549553 (G2E3-008) 30592323-30598288 processed_transcript
ENST00000550944 (G2E3-006) 30559158-30592447 protein_coding
ENST00000552488 (G2E3-007) 30559160-30590963 processed_transcript
ENST00000552515 (G2E3-011) 30593592-30605565 protein_coding
ENST00000553504 (G2E3-015) 30559310-30616672 protein_coding
ENST00000554714 (G2E3-014) 30574535-30593504 protein_coding
ENST00000555429 (G2E3-013) 30577761-30589484 protein_coding
ENSG00000258558 (RP11-159L20.2)
 ENST00000554665 (RP11-159L20.2-001) 30734926-30822702 antisense
ENSG00000258648 (UBE2CP1)
ubiquitin-conjugating enzyme E2C pseudogene 1 		ENST00000557130 (UBE2CP1-001) 30683045-30683598 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003SX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035293-ENSMUSG00000020952 CGP 10090 12:51348061-51450096
GeneTranscriptPositionBiotype
ENSMUSG00000020952 (Scfd1)
Sec1 family domain containing 1 		ENSMUST00000021335 (Scfd1-201) 51377580-51450096 protein_coding
ENSMUSG00000035293 (G2e3)
G2/M-phase specific E3 ubiquitin ligase 		ENSMUST00000054308 (G2e3-001) 51348061-51376986 protein_coding
ENSMUST00000119211 (G2e3-002) 51348288-51373267 protein_coding
ENSMUST00000121521 (G2e3-003) 51348372-51373370 protein_coding
ENSMUST00000144767 (G2e3-004) 51357149-51363533 retained_intron
ENSMUST00000152236 (G2e3-005) 51370675-51374077 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003SX_0001ENSG00000092108ENST00000311943ENST00000458591ENST00000463622ENST00000544052ENST00000554437ENST00000554776ENST00000554819ENST00000556768ENSG00000092140ENST00000206595ENST00000438909ENST00000547532ENST00000548934ENST00000549159ENST00000552488ENST00000552515ENST00000553504ENSG00000258558ENST00000554665ENSG00000258648ENST00000557130CIL_0003SX_0002ENSMUSG00000020952ENSMUST00000021335ENSMUSG00000035293ENSMUST00000054308ENSMUST00000119211ENSMUST00000121521ENSMUST00000144767ENSMUST00000152236
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092108 ENST00000311943 N/A N/A 0.762±0.00 N/A 2.806±0.00 1.740±0.00 1.940±0.43 6.056±0.00 3.891±0.00 2.796±0.19 N/A 7.798±0.19 4.134±0.00 4.274±0.68
ENST00000396629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458591 N/A N/A N/A 2.203±0.00 10.322±0.00 4.344±0.00 2.630±0.00 1.403±0.00 3.673±0.00 3.276±0.00 N/A 6.320±2.52 2.355±0.00 N/A
ENST00000463622 1.349±0.00 3.420±0.00 N/A 4.570±0.00 2.775±0.00 N/A 1.732±0.00 N/A N/A 1.301±0.00 2.297±0.00 N/A N/A N/A
ENST00000469043 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544052 4.521±0.00 4.597±0.00 2.103±0.00 2.944±1.12 5.325±0.00 4.456±1.71 4.993±0.00 4.413±2.27 5.890±0.00 3.035±0.19 2.868±0.00 7.367±1.95 4.635±2.20 4.829±1.92
ENST00000553278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554437 N/A N/A N/A N/A N/A N/A N/A N/A 4.472±0.00 N/A N/A 13.401±2.73 6.587±0.00 9.335±1.56
ENST00000554486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.076±0.00 N/A N/A N/A
ENST00000554819 N/A N/A N/A N/A N/A N/A N/A 4.514±0.00 N/A N/A 1.349±0.00 15.324±0.00 6.790±0.00 12.582±0.00
ENST00000555259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556768 2.784±0.00 5.463±0.00 N/A N/A 4.943±0.00 1.745±0.00 N/A 3.383±0.00 4.080±0.00 1.594±0.00 2.411±0.90 5.120±0.00 3.708±0.00 4.374±0.00
ENST00000557076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000092140 ENST00000206595 N/A 0.425±0.00 N/A 0.648±0.21 0.583±0.32 0.553±0.22 0.238±0.09 1.167±0.00 0.587±0.00 N/A 0.493±0.00 1.463±0.56 0.555±0.40 1.852±0.52
ENST00000438909 0.511±0.00 N/A N/A 1.051±0.00 1.306±0.60 1.193±0.00 N/A 0.313±0.00 1.531±0.00 N/A 0.030±0.00 1.946±1.63 0.582±0.23 7.293±1.95
ENST00000544007 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.812±0.00
ENST00000547638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548934 N/A N/A N/A N/A N/A N/A N/A N/A 0.677±0.00 N/A 1.335±0.00 N/A N/A N/A
ENST00000549159 N/A N/A N/A 0.382±0.00 N/A 0.569±0.17 0.237±0.00 N/A 0.101±0.00 0.329±0.00 0.193±0.00 1.182±0.00 N/A N/A
ENST00000549553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552488 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.191±0.00 N/A N/A N/A N/A
ENST00000552515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.568±0.00
ENST00000553504 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A
ENST00000554714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258558 ENST00000554665 N/A 0.069±0.00 N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A 0.228±0.05 N/A N/A
ENSG00000258648 ENST00000557130 0.059±0.00 0.401±0.00 1.585±0.00 0.171±0.00 0.162±0.00 0.646±0.00 0.197±0.00 1.913±0.00 1.426±0.00 N/A N/A 1.008±1.39 N/A 0.266±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020952 ENSMUST00000021335 9.837±0.76 3.027±0.49 16.135±1.63 11.437±1.09 5.885±1.89 3.475±0.53 4.584±0.45 5.616±1.55 11.708±6.09 5.362±1.39 3.690±0.44 7.316±6.83 21.973±4.65 5.462±1.33
ENSMUSG00000035293 ENSMUST00000054308 0.563±0.47 0.673±0.14 1.441±0.13 2.811±2.18 0.439±0.18 0.766±0.20 0.198±0.00 0.377±0.14 3.238±3.06 0.614±0.15 0.234±0.05 0.995±0.45 1.786±1.25 1.263±0.28
ENSMUST00000119211 0.196±0.00 N/A N/A N/A N/A N/A 0.189±0.04 N/A 0.234±0.06 0.470±0.05 N/A 0.486±0.19 1.251±0.41 2.649±0.54
ENSMUST00000121521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.719±0.35 0.743±0.32 N/A
ENSMUST00000144767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.275±0.00
ENSMUST00000152236 N/A 0.455±0.06 N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A N/A 0.476±0.00 N/A

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