C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003TB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000077864-ENSDARG00000078391 CGP 7955 17:22952135-23051380
GeneTranscriptPositionBiotype
ENSDARG00000077864 (rasgrp3)
RAS guanyl releasing protein 3 (calcium and DAG-regulated) 		ENSDART00000114212 (rasgrp3-001) 22976803-23031061 protein_coding
ENSDART00000129122 (rasgrp3-201) 22986073-23032097 protein_coding
ENSDART00000138069 (rasgrp3-002) 22952135-22992335 protein_coding
ENSDARG00000078391 (fam98a)
family with sequence similarity 98, member A 		ENSDART00000102763 (fam98a-201) 23042554-23051337 protein_coding
ENSDART00000126525 (fam98a-202) 23044186-23051334 protein_coding
ENSDART00000156411 (fam98a-001) 23041852-23051380 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003TB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152689-ENSG00000119812 CGP 9606 2:33436324-33599382
GeneTranscriptPositionBiotype
ENSG00000119812 (FAM98A)
family with sequence similarity 98, member A 		ENST00000238823 (FAM98A-001) 33583658-33599362 protein_coding
ENST00000403368 (FAM98A-004) 33583670-33599291 protein_coding
ENST00000431950 (FAM98A-009) 33595487-33599277 protein_coding
ENST00000464415 (FAM98A-006) 33591923-33599382 retained_intron
ENST00000474985 (FAM98A-002) 33583662-33589848 retained_intron
ENST00000475122 (FAM98A-010) 33584889-33586869 retained_intron
ENST00000492649 (FAM98A-011) 33585614-33587641 retained_intron
ENST00000498340 (FAM98A-007) 33586671-33599284 processed_transcript
ENSG00000152689 (RASGRP3)
RAS guanyl releasing protein 3 (calcium and DAG-regulated) 		ENST00000402538 (RASGRP3-001) 33436324-33564750 protein_coding
ENST00000403687 (RASGRP3-006) 33476228-33564731 protein_coding
ENST00000407811 (RASGRP3-004) 33513875-33564605 protein_coding
ENST00000419772 (RASGRP3-019) 33527203-33539989 nonsense_mediated_decay
ENST00000423159 (RASGRP3-013) 33476649-33520656 protein_coding
ENST00000425210 (RASGRP3-008) 33476649-33516573 protein_coding
ENST00000437184 (RASGRP3-007) 33458046-33522102 protein_coding
ENST00000442390 (RASGRP3-012) 33476623-33520009 protein_coding
ENST00000444784 (RASGRP3-014) 33476649-33520653 protein_coding
ENST00000468856 (RASGRP3-005) 33531725-33540181 retained_intron
ENST00000477927 (RASGRP3-018) 33524430-33530944 processed_transcript
ENST00000479528 (RASGRP3-010) 33436567-33516693 retained_intron
ENST00000482731 (RASGRP3-020) 33539651-33543627 processed_transcript
ENST00000482857 (RASGRP3-011) 33476597-33516788 retained_intron
ENST00000484909 (RASGRP3-002) 33436326-33482936 retained_intron
ENST00000490150 (RASGRP3-017) 33527181-33539349 retained_intron
ENST00000494927 (RASGRP3-015) 33476665-33482014 retained_intron
ENST00000497723 (RASGRP3-009) 33436413-33511842 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0003TB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000071042-ENSMUSG00000002017 CGP 10090 17:75435905-75551946
GeneTranscriptPositionBiotype
ENSMUSG00000002017 (Fam98a)
family with sequence similarity 98, member A 		ENSMUST00000112507 (Fam98a-001) 75537086-75551946 protein_coding
ENSMUST00000140729 (Fam98a-003) 75539031-75540572 retained_intron
ENSMUST00000141969 (Fam98a-002) 75544467-75551796 retained_intron
ENSMUSG00000071042 (Rasgrp3)
RAS, guanyl releasing protein 3 		ENSMUST00000095204 (Rasgrp3-201) 75465538-75529043 protein_coding
ENSMUST00000164192 (Rasgrp3-202) 75435905-75529043 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TB_0001ENSDARG00000077864ENSDART00000114212ENSDART00000129122ENSDART00000138069ENSDARG00000078391ENSDART00000102763ENSDART00000126525ENSDART00000156411CIL_0003TB_0002ENSG00000119812ENST00000238823ENST00000403368ENST00000431950ENST00000464415ENST00000474985ENST00000475122ENST00000492649ENST00000498340ENSG00000152689ENST00000402538ENST00000403687ENST00000407811ENST00000419772ENST00000423159ENST00000425210ENST00000437184ENST00000442390ENST00000444784ENST00000468856ENST00000477927ENST00000479528ENST00000482731ENST00000482857ENST00000484909ENST00000490150ENST00000494927ENST00000497723CIL_0003TB_0003ENSMUSG00000002017ENSMUST00000112507ENSMUST00000140729ENSMUST00000141969ENSMUSG00000071042ENSMUST00000095204ENSMUST00000164192
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003TB_0001ENSDARG00000077864ENSDART00000114212ENSDART00000129122ENSDART00000138069ENSDARG00000078391ENSDART00000102763ENSDART00000126525ENSDART00000156411CIL_0003TB_0002ENSG00000119812ENST00000238823ENST00000403368ENST00000464415ENST00000474985ENST00000498340ENSG00000152689ENST00000402538ENST00000403687ENST00000407811ENST00000425210ENST00000437184ENST00000468856ENST00000479528ENST00000484909CIL_0003TB_0003ENSMUSG00000002017ENSMUST00000112507ENSMUSG00000071042ENSMUST00000095204ENSMUST00000164192
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000077864 ENSDART00000114212 N/A N/A N/A N/A N/A N/A 1.042±0.00 N/A 0.077±0.00 N/A N/A N/A N/A N/A
ENSDART00000129122 N/A N/A N/A N/A N/A N/A 0.680±0.00 2.369±0.00 0.068±0.00 N/A N/A N/A N/A N/A
ENSDART00000138069 N/A N/A N/A N/A N/A N/A 0.814±0.00 N/A 0.104±0.00 N/A N/A N/A N/A N/A
ENSDARG00000078391 ENSDART00000102763 N/A N/A N/A N/A N/A N/A N/A N/A 0.394±0.00 N/A N/A N/A N/A N/A
ENSDART00000126525 N/A N/A N/A 4.024±0.00 N/A N/A N/A 4.083±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000156411 N/A N/A N/A 5.302±2.37 N/A N/A 4.803±0.86 12.582±2.51 0.925±0.00 N/A 2.663±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119812 ENST00000238823 12.438±0.00 7.421±0.00 1.744±0.00 9.511±6.30 10.189±7.73 6.851±4.90 7.164±6.30 9.442±6.84 5.181±2.09 6.408±0.00 9.507±6.67 8.960±5.70 13.942±0.56 32.868±2.87
ENST00000403368 N/A N/A N/A N/A N/A N/A 1.152±0.00 N/A N/A 2.008±0.00 N/A 0.737±0.00 N/A N/A
ENST00000431950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464415 N/A N/A 5.050±0.00 4.014±0.00 N/A 5.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474985 N/A 0.706±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498340 N/A N/A N/A N/A 5.377±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152689 ENST00000402538 1.279±0.00 N/A N/A N/A 0.819±0.00 0.365±0.00 1.329±0.00 N/A 0.682±0.00 1.579±0.00 N/A 0.568±0.15 1.417±0.48 0.239±0.00
ENST00000403687 N/A 1.324±0.00 N/A 1.656±0.24 0.610±0.00 N/A N/A 0.558±0.00 0.340±0.00 0.971±0.00 1.793±0.00 0.384±0.00 0.382±0.12 0.084±0.00
ENST00000407811 0.441±0.00 3.444±0.00 1.530±0.00 2.494±1.45 1.656±0.33 0.846±0.31 1.414±0.57 1.355±0.40 0.566±0.00 0.768±0.00 1.059±0.00 1.138±0.19 1.183±0.99 0.405±0.19
ENST00000419772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000423159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000425210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.974±0.00 N/A N/A N/A
ENST00000437184 N/A N/A N/A N/A N/A N/A 5.034±0.00 N/A 2.348±0.00 N/A 5.451±0.00 2.951±0.00 N/A N/A
ENST00000442390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468856 N/A N/A N/A N/A N/A N/A N/A 0.175±0.00 N/A 0.721±0.00 N/A N/A N/A 0.140±0.00
ENST00000477927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479528 N/A N/A 7.336±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484909 N/A N/A N/A N/A N/A N/A N/A 0.516±0.00 1.005±0.00 N/A N/A N/A N/A N/A
ENST00000490150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494927 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002017 ENSMUST00000112507 9.206±1.20 2.483±0.22 15.315±0.10 9.630±2.94 3.209±1.34 4.705±1.60 8.164±0.55 6.815±1.18 9.067±4.32 5.138±1.00 11.153±1.18 8.581±4.69 14.434±2.86 34.496±6.29
ENSMUST00000140729 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000071042 ENSMUST00000095204 1.617±0.34 1.150±0.00 0.295±0.00 0.345±0.15 2.096±0.64 0.652±0.19 0.940±0.10 0.863±0.32 0.184±0.00 1.894±0.32 1.151±0.00 1.203±0.70 N/A 0.176±0.00
ENSMUST00000164192 2.007±0.73 2.083±0.46 1.010±0.03 1.151±0.05 2.950±1.72 0.830±0.00 3.273±0.34 2.296±0.32 0.909±0.32 9.264±1.50 4.670±1.35 1.506±0.89 2.496±0.86 0.116±0.05

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