C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003UF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076689-ENSDARG00000070170 CGP 7955 16:44672409-44753593
GeneTranscriptPositionBiotype
ENSDARG00000040076 (pycard)
PYD and CARD domain containing 		ENSDART00000055921 (pycard-001) 44753492-44759881 protein_coding
ENSDART00000059712 (pycard-201) 44753495-44759874 protein_coding
ENSDARG00000070170 (SCN1B (2 of 3))
sodium channel, voltage-gated, type I, beta subunit 		ENSDART00000102771 (SCN1B (2 of 3)-001) 44743898-44753593 protein_coding
ENSDARG00000076689 (gramd1a)
GRAM domain containing 1A 		ENSDART00000111956 (gramd1a-201) 44672438-44725046 protein_coding
ENSDART00000136755 (gramd1a-002) 44706298-44730654 processed_transcript
ENSDART00000142648 (gramd1a-001) 44672409-44714225 protein_coding
ENSDARG00000091933 (si:ch211-225p5.9)
si:ch211-225p5.9 		ENSDART00000136742 (si:ch211-225p5.9-001) 44725315-44734769 processed_transcript
ENSDARG00000093087 (si:ch211-225p5.10)
si:ch211-225p5.10 		ENSDART00000134300 (si:ch211-225p5.10-001) 44717535-44718576 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0003UF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000089351-ENSG00000105711 CGP 9606 19:34994784-35040448
GeneTranscriptPositionBiotype
ENSG00000089351 (GRAMD1A)
GRAM domain containing 1A 		ENST00000317991 (GRAMD1A-003) 35000287-35026469 protein_coding
ENST00000411896 (GRAMD1A-004) 35000426-35026469 protein_coding
ENST00000424536 (GRAMD1A-015) 35000456-35010639 protein_coding
ENST00000594597 (GRAMD1A-007) 34999387-35010379 processed_transcript
ENST00000595596 (GRAMD1A-010) 35012988-35014365 retained_intron
ENST00000598073 (GRAMD1A-008) 35001140-35010339 processed_transcript
ENST00000598118 (GRAMD1A-005) 35014969-35026469 retained_intron
ENST00000598362 (GRAMD1A-011) 35013607-35014879 retained_intron
ENST00000598580 (GRAMD1A-012) 35011484-35013584 retained_intron
ENST00000599476 (GRAMD1A-009) 35009673-35010478 retained_intron
ENST00000599564 (GRAMD1A-002) 34994784-35026471 protein_coding
ENST00000600231 (GRAMD1A-006) 35000323-35026469 nonsense_mediated_decay
ENST00000603669 (GRAMD1A-013) 35000372-35009445 processed_transcript
ENST00000603907 (GRAMD1A-014) 35023298-35023830 retained_intron
ENSG00000105711 (SCN1B)
sodium channel, voltage-gated, type I, beta subunit 		ENST00000262631 (SCN1B-001) 35030684-35040448 protein_coding
ENST00000415950 (SCN1B-003) 35030821-35034270 protein_coding
ENST00000595652 (SCN1B-002) 35030733-35040073 protein_coding
ENST00000596348 (SCN1B-005) 35031732-35039219 processed_transcript
ENST00000602150 (SCN1B-004) 35036899-35040448 retained_intron
ENSG00000267874 (CTD-2527I21.9)
 ENST00000601692 (CTD-2527I21.9-001) 35036334-35037060 sense_intronic

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UF_0001ENSDARG00000040076ENSDART00000055921ENSDART00000059712ENSDARG00000070170ENSDART00000102771ENSDARG00000076689ENSDART00000111956ENSDART00000136755ENSDART00000142648ENSDARG00000091933ENSDART00000136742ENSDARG00000093087ENSDART00000134300CIL_0003UF_0002ENSG00000089351ENST00000317991ENST00000411896ENST00000424536ENST00000594597ENST00000595596ENST00000598073ENST00000598118ENST00000598362ENST00000598580ENST00000599476ENST00000599564ENST00000600231ENST00000603669ENST00000603907ENSG00000105711ENST00000262631ENST00000415950ENST00000595652ENST00000596348ENST00000602150ENSG00000267874ENST00000601692
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UF_0001ENSDARG00000040076ENSDART00000055921ENSDARG00000070170ENSDART00000102771ENSDARG00000076689ENSDART00000111956ENSDART00000142648ENSDARG00000091933ENSDART00000136742ENSDARG00000093087ENSDART00000134300CIL_0003UF_0002ENSG00000089351ENST00000317991ENST00000411896ENST00000424536ENST00000595596ENST00000598118ENST00000599564ENST00000600231ENSG00000105711ENST00000262631ENST00000415950ENST00000595652ENST00000596348ENST00000602150ENSG00000267874ENST00000601692
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040076 ENSDART00000055921 N/A N/A N/A 2.284±1.24 N/A N/A 6.555±2.20 15.368±3.91 0.146±0.00 N/A N/A N/A N/A N/A
ENSDART00000059712 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000070170 ENSDART00000102771 N/A N/A N/A 0.224±0.14 N/A N/A 0.039±0.00 1.481±0.50 N/A N/A 20.926±0.00 N/A N/A N/A
ENSDARG00000076689 ENSDART00000111956 N/A N/A N/A 11.166±7.81 N/A N/A 1.440±0.02 5.431±1.59 N/A N/A 4.149±0.00 N/A N/A N/A
ENSDART00000136755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000142648 N/A N/A N/A 6.816±0.00 N/A N/A N/A N/A N/A N/A 0.765±0.00 N/A N/A N/A
ENSDARG00000091933 ENSDART00000136742 N/A N/A N/A 0.442±0.31 N/A N/A 0.244±0.00 3.838±0.00 0.099±0.00 N/A 1.112±0.00 N/A N/A N/A
ENSDARG00000093087 ENSDART00000134300 N/A N/A N/A N/A N/A N/A 1.966±1.69 0.761±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089351 ENST00000317991 N/A N/A N/A 4.960±4.24 N/A N/A N/A N/A 0.863±0.16 N/A N/A 1.206±0.00 N/A N/A
ENST00000411896 8.889±0.00 32.233±0.00 N/A 1.382±0.00 8.469±0.00 N/A 1.923±1.62 6.934±0.00 0.610±0.00 25.271±0.00 5.085±0.00 27.723±19.00 15.591±0.00 11.372±4.50
ENST00000424536 N/A N/A N/A N/A 2.052±0.00 N/A 0.263±0.00 3.646±2.15 2.505±1.67 38.013±0.00 N/A N/A N/A N/A
ENST00000594597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595596 N/A N/A 0.807±0.00 N/A 2.343±0.00 N/A 0.382±0.00 0.833±0.00 N/A N/A N/A N/A N/A N/A
ENST00000598073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598118 N/A N/A 0.749±0.00 N/A N/A 0.280±0.00 N/A N/A N/A N/A 0.455±0.00 N/A N/A N/A
ENST00000598362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599564 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 N/A N/A 6.200±0.00 N/A N/A N/A
ENST00000600231 N/A 18.927±0.00 N/A 2.883±0.00 5.156±0.00 N/A 4.310±0.00 5.167±0.00 1.767±1.27 36.716±0.00 12.246±0.00 9.750±1.52 4.777±0.22 6.781±0.00
ENST00000603669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105711 ENST00000262631 13.840±0.00 17.435±0.00 N/A 65.239±42.53 7.173±6.86 7.517±0.00 11.948±10.23 6.487±0.00 4.151±0.00 4.648±3.78 193.726±169.03 10.028±10.05 9.313±3.05 6.304±4.22
ENST00000415950 N/A N/A 0.143±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.371±0.00 N/A
ENST00000596348 N/A N/A 0.246±0.00 N/A 4.273±0.00 1.905±0.00 1.823±0.00 1.747±0.00 3.741±0.00 N/A 55.620±0.00 0.694±0.00 N/A N/A
ENST00000602150 N/A 0.816±0.00 N/A N/A N/A 0.037±0.00 N/A 0.472±0.00 N/A 0.110±0.00 N/A 0.131±0.09 N/A 0.540±0.00
ENSG00000267874 ENST00000601692 N/A 8.084±0.00 N/A N/A 4.402±0.00 1.659±0.00 N/A 6.448±0.00 2.261±0.00 3.278±0.00 N/A N/A N/A 3.184±0.00

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