C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003UK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037473-ENSDARG00000055837 CGP 7955 16:28383735-28483195
GeneTranscriptPositionBiotype
ENSDARG00000037473 (cd79a)
CD79a molecule, immunoglobulin-associated alpha 		ENSDART00000143960 (cd79a-001) 28383735-28391552 protein_coding
ENSDARG00000055837 (arhgef1b)
Rho guanine nucleotide exchange factor (GEF) 1b 		ENSDART00000087624 (arhgef1b-201) 28404313-28483195 protein_coding
ENSDART00000124618 (arhgef1b-202) 28391680-28448140 protein_coding
ENSDART00000139355 (arhgef1b-001) 28391679-28483195 protein_coding
CIL_0003UK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105369-ENSG00000076928 CGP 9606 19:41877120-41930150
GeneTranscriptPositionBiotype
ENSG00000076928 (ARHGEF1)
Rho guanine nucleotide exchange factor (GEF) 1 		ENST00000337665 (ARHGEF1-006) 41884448-41907454 protein_coding
ENST00000347545 (ARHGEF1-001) 41883225-41907454 protein_coding
ENST00000354532 (ARHGEF1-005) 41883161-41907443 protein_coding
ENST00000378152 (ARHGEF1-007) 41884370-41907454 protein_coding
ENST00000593609 (ARHGEF1-023) 41906576-41907452 retained_intron
ENST00000594044 (ARHGEF1-018) 41898424-41903407 retained_intron
ENST00000594258 (ARHGEF1-017) 41897811-41902897 protein_coding
ENST00000594417 (ARHGEF1-024) 41923094-41930127 protein_coding
ENST00000594513 (ARHGEF1-026) 41928590-41929846 processed_transcript
ENST00000594521 (ARHGEF1-015) 41894292-41902030 protein_coding
ENST00000595723 (ARHGEF1-022) 41902798-41906561 protein_coding
ENST00000595770 (ARHGEF1-025) 41928820-41930150 retained_intron
ENST00000595897 (ARHGEF1-011) 41897675-41907454 retained_intron
ENST00000596957 (ARHGEF1-013) 41883224-41892528 processed_transcript
ENST00000598444 (ARHGEF1-021) 41905800-41906335 retained_intron
ENST00000598587 (ARHGEF1-020) 41905513-41905982 retained_intron
ENST00000598812 (ARHGEF1-014) 41892634-41895373 nonsense_mediated_decay
ENST00000599589 (ARHGEF1-009) 41895379-41930150 protein_coding
ENST00000599846 (ARHGEF1-010) 41883184-41907448 protein_coding
ENST00000600274 (ARHGEF1-002) 41883183-41907454 retained_intron
ENST00000600387 (ARHGEF1-012) 41883173-41890776 retained_intron
ENST00000600517 (ARHGEF1-019) 41904216-41906043 nonsense_mediated_decay
ENST00000617585 (ARHGEF1-016) 41894487-41896878 retained_intron
ENSG00000105369 (CD79A)
CD79a molecule, immunoglobulin-associated alpha 		ENST00000221972 (CD79A-001) 41877120-41881372 protein_coding
ENST00000444740 (CD79A-002) 41877305-41880980 protein_coding
ENST00000597454 (CD79A-003) 41877280-41880702 protein_coding
ENSG00000268041 (CTD-2575K13.6)
 ENST00000597630 (CTD-2575K13.6-001) 41908519-41910065 processed_transcript
ENST00000598387 (CTD-2575K13.6-002) 41909377-41910097 transcribed_unprocessed_pseudogene
CIL_0003UK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003379-ENSMUSG00000040940 CGP 10090 7:24897381-24926592
GeneTranscriptPositionBiotype
ENSMUSG00000003379 (Cd79a)
CD79A antigen (immunoglobulin-associated alpha) 		ENSMUST00000003469 (Cd79a-001) 24897381-24902197 protein_coding
ENSMUSG00000040940 (Arhgef1)
Rho guanine nucleotide exchange factor (GEF) 1 		ENSMUST00000047873 (Arhgef1-003) 24903037-24926589 protein_coding
ENSMUST00000098683 (Arhgef1-001) 24903051-24926589 protein_coding
ENSMUST00000117419 (Arhgef1-006) 24904407-24926592 protein_coding
ENSMUST00000117796 (Arhgef1-002) 24902912-24926592 protein_coding
ENSMUST00000126484 (Arhgef1-013) 24923248-24924847 retained_intron
ENSMUST00000126918 (Arhgef1-014) 24923353-24925485 retained_intron
ENSMUST00000127761 (Arhgef1-004) 24903075-24909960 retained_intron
ENSMUST00000129383 (Arhgef1-009) 24903065-24904384 processed_transcript
ENSMUST00000129928 (Arhgef1-012) 24919202-24922379 retained_intron
ENSMUST00000132751 (Arhgef1-008) 24916831-24926106 protein_coding
ENSMUST00000132786 (Arhgef1-015) 24923363-24925936 processed_transcript
ENSMUST00000144714 (Arhgef1-011) 24912617-24918392 retained_intron
ENSMUST00000145783 (Arhgef1-005) 24904358-24926589 processed_transcript
ENSMUST00000151121 (Arhgef1-010) 24907647-24912140 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UK_0001ENSDARG00000037473ENSDART00000143960ENSDARG00000055837ENSDART00000087624ENSDART00000124618ENSDART00000139355CIL_0003UK_0002ENSG00000076928ENST00000337665ENST00000347545ENST00000354532ENST00000378152ENST00000593609ENST00000594044ENST00000594258ENST00000594417ENST00000594513ENST00000594521ENST00000595723ENST00000595770ENST00000595897ENST00000596957ENST00000598444ENST00000598587ENST00000598812ENST00000599589ENST00000599846ENST00000600274ENST00000600387ENST00000600517ENST00000617585ENSG00000105369ENST00000221972ENST00000444740ENST00000597454ENSG00000268041ENST00000597630ENST00000598387CIL_0003UK_0003ENSMUSG00000003379ENSMUST00000003469ENSMUSG00000040940ENSMUST00000047873ENSMUST00000098683ENSMUST00000117419ENSMUST00000117796ENSMUST00000126484ENSMUST00000126918ENSMUST00000127761ENSMUST00000129383ENSMUST00000129928ENSMUST00000132751ENSMUST00000132786ENSMUST00000144714ENSMUST00000145783ENSMUST00000151121
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UK_0001ENSDARG00000037473ENSDART00000143960ENSDARG00000055837ENSDART00000087624ENSDART00000124618ENSDART00000139355CIL_0003UK_0002ENSG00000076928ENST00000337665ENST00000347545ENST00000354532ENST00000378152ENST00000594044ENST00000594258ENST00000595897ENST00000598812ENST00000599846ENST00000600274ENST00000600387ENSG00000105369ENST00000221972ENST00000444740ENST00000597454ENSG00000268041ENST00000597630ENST00000598387CIL_0003UK_0003ENSMUSG00000003379ENSMUST00000003469ENSMUSG00000040940ENSMUST00000047873ENSMUST00000098683ENSMUST00000117419ENSMUST00000117796ENSMUST00000129928ENSMUST00000132751ENSMUST00000132786ENSMUST00000144714ENSMUST00000145783
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000037473 ENSDART00000143960 N/A N/A N/A 0.268±0.12 N/A N/A 2.997±2.11 9.025±0.00 0.180±0.00 N/A 0.383±0.00 N/A N/A N/A
ENSDARG00000055837 ENSDART00000087624 N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A
ENSDART00000124618 N/A N/A N/A 1.793±0.10 N/A N/A 6.704±1.17 8.389±0.00 N/A N/A 2.016±0.00 N/A N/A N/A
ENSDART00000139355 N/A N/A N/A 4.548±0.38 N/A N/A 2.569±0.88 13.616±0.00 0.840±0.00 N/A 0.816±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076928 ENST00000337665 N/A N/A N/A N/A N/A N/A N/A 0.818±0.00 1.837±0.00 N/A N/A 8.133±6.22 15.351±5.41 3.860±0.00
ENST00000347545 N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A 2.053±0.00 N/A 10.575±2.26 10.801±0.00 3.008±0.00
ENST00000354532 29.432±0.00 54.017±0.00 0.455±0.00 0.187±0.00 7.252±4.85 7.031±0.00 1.412±1.07 17.781±0.00 3.824±0.00 17.391±0.00 1.938±0.00 14.683±0.00 15.423±0.00 7.024±0.00
ENST00000378152 N/A N/A N/A 0.133±0.00 0.768±0.00 3.440±0.00 0.171±0.00 N/A N/A N/A N/A 5.274±0.00 N/A N/A
ENST00000593609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.434±15.86 N/A N/A
ENST00000594258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A
ENST00000594417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595897 N/A 62.432±0.00 0.611±0.00 3.673±0.00 N/A N/A 1.403±0.00 N/A 2.230±0.00 7.157±5.51 N/A 4.808±0.00 N/A 5.452±0.00
ENST00000596957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598812 N/A N/A N/A N/A 3.635±0.00 N/A N/A N/A N/A N/A 0.384±0.00 N/A N/A N/A
ENST00000599589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599846 N/A N/A N/A 3.016±0.00 N/A 3.464±0.00 1.184±0.00 N/A N/A 10.010±0.00 1.456±0.00 N/A N/A N/A
ENST00000600274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A N/A
ENST00000600387 N/A N/A 0.350±0.00 0.222±0.00 N/A 0.876±0.00 0.141±0.00 0.441±0.00 1.213±0.00 N/A N/A N/A N/A N/A
ENST00000600517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105369 ENST00000221972 0.945±0.00 222.895±0.00 N/A 0.060±0.00 3.163±0.56 1.169±0.04 0.063±0.00 0.345±0.00 0.294±0.00 7.157±4.66 0.430±0.00 2.281±1.17 1.143±0.74 0.122±0.05
ENST00000444740 N/A 128.247±0.00 N/A N/A 1.473±0.00 0.641±0.29 N/A 0.089±0.00 N/A 4.147±1.60 N/A N/A 0.919±0.00 0.203±0.04
ENST00000597454 N/A N/A N/A 0.220±0.00 N/A N/A N/A N/A 0.391±0.00 N/A N/A 0.275±0.00 0.128±0.00 N/A
ENSG00000268041 ENST00000597630 0.252±0.00 0.995±0.00 N/A 0.877±0.00 N/A N/A 0.040±0.00 N/A N/A 1.094±0.00 0.143±0.00 0.350±0.17 N/A 1.232±0.64
ENST00000598387 0.320±0.00 N/A N/A 0.611±0.00 0.847±0.00 N/A N/A 0.083±0.00 N/A N/A N/A 0.989±0.61 0.404±0.17 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003379 ENSMUST00000003469 0.863±0.35 0.715±0.27 0.332±0.01 0.165±0.05 128.408±61.07 13.864±2.43 3.017±1.82 4.943±4.37 3.073±4.09 24.523±0.73 2.496±5.25 0.633±0.34 0.297±0.20 0.073±0.02
ENSMUSG00000040940 ENSMUST00000047873 26.891±5.24 21.318±1.96 19.686±4.36 12.716±0.08 50.481±16.52 11.867±4.86 5.901±1.83 10.796±2.53 11.301±5.11 33.022±2.39 2.517±0.57 24.446±10.62 47.903±40.88 3.224±0.92
ENSMUST00000098683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.409±0.52 N/A N/A N/A
ENSMUST00000117419 N/A N/A N/A 10.019±0.00 N/A 10.978±2.57 N/A 5.814±0.00 4.718±0.77 N/A 3.743±0.60 18.760±1.94 20.640±11.52 3.438±0.20
ENSMUST00000117796 N/A N/A N/A 10.441±0.00 N/A N/A N/A N/A N/A N/A 3.897±1.70 N/A N/A N/A
ENSMUST00000126484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129928 N/A N/A N/A 29.404±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132751 N/A N/A N/A 16.636±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132786 N/A N/A N/A N/A N/A N/A N/A N/A 18.959±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144714 N/A N/A N/A N/A 32.322±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145783 10.390±0.59 9.515±1.11 7.601±0.00 N/A 48.215±30.65 6.471±0.81 7.219±2.83 8.066±2.55 4.253±1.87 28.860±4.09 3.014±1.95 12.724±3.54 12.605±7.73 2.035±1.01
ENSMUST00000151121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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