C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003UY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132824-ENSG00000168734 CGP 9606 20:44496221-44624247
GeneTranscriptPositionBiotype
ENSG00000132824 (SERINC3)
serine incorporator 3 		ENST00000255175 (SERINC3-201) 44496224-44522085 protein_coding
ENST00000342374 (SERINC3-001) 44497431-44522109 protein_coding
ENST00000411544 (SERINC3-002) 44496221-44504891 protein_coding
ENST00000468234 (SERINC3-003) 44513893-44522054 processed_transcript
ENSG00000168734 (PKIG)
protein kinase (cAMP-dependent, catalytic) inhibitor gamma 		ENST00000349959 (PKIG-008) 44614308-44619037 protein_coding
ENST00000372886 (PKIG-004) 44582549-44619037 protein_coding
ENST00000372887 (PKIG-007) 44531916-44624247 protein_coding
ENST00000372889 (PKIG-006) 44531909-44619037 protein_coding
ENST00000372891 (PKIG-003) 44531785-44619037 protein_coding
ENST00000372892 (PKIG-002) 44531785-44619037 protein_coding
ENST00000372894 (PKIG-001) 44531785-44619037 protein_coding
ENST00000477390 (PKIG-005) 44564201-44614768 processed_transcript
ENSG00000196839 (ADA)
adenosine deaminase 		ENST00000372874 (ADA-001) 44619522-44651742 protein_coding
ENST00000464097 (ADA-002) 44619522-44626491 processed_transcript
ENST00000492931 (ADA-003) 44619810-44651691 processed_transcript
ENST00000535573 (ADA-005) 44636071-44652233 processed_transcript
ENST00000536076 (ADA-006) 44626517-44652114 processed_transcript
ENST00000536532 (ADA-004) 44619579-44651681 nonsense_mediated_decay
ENST00000537820 (ADA-008) 44619810-44651691 protein_coding
ENST00000539235 (ADA-007) 44619810-44651691 nonsense_mediated_decay
ENST00000545776 (ADA-009) 44626323-44651661 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003UY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017707-ENSMUSG00000035268 CGP 10090 2:163623272-163726158
GeneTranscriptPositionBiotype
ENSMUSG00000017707 (Serinc3)
serine incorporator 3 		ENSMUST00000017851 (Serinc3-001) 163623272-163645131 protein_coding
ENSMUST00000129854 (Serinc3-002) 163636831-163645125 processed_transcript
ENSMUSG00000035268 (Pkig)
protein kinase inhibitor, gamma 		ENSMUST00000064703 (Pkig-001) 163658399-163726154 protein_coding
ENSMUST00000099105 (Pkig-003) 163658415-163725688 protein_coding
ENSMUST00000109400 (Pkig-002) 163694038-163726152 protein_coding
ENSMUST00000126182 (Pkig-004) 163658477-163725791 protein_coding
ENSMUST00000131228 (Pkig-008) 163658480-163725518 protein_coding
ENSMUST00000135537 (Pkig-006) 163661499-163725473 protein_coding
ENSMUST00000147385 (Pkig-007) 163658386-163723758 retained_intron
ENSMUST00000152418 (Pkig-005) 163658458-163721198 protein_coding
ENSMUST00000164399 (Pkig-201) 163658386-163726158 protein_coding
ENSMUSG00000087129 (Gm16316)
predicted gene 16316 		ENSMUST00000154065 (Gm16316-001) 163685004-163692279 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UY_0001ENSG00000132824ENST00000255175ENST00000342374ENST00000411544ENST00000468234ENSG00000168734ENST00000349959ENST00000372886ENST00000372887ENST00000372889ENST00000372891ENST00000372892ENST00000372894ENST00000477390ENSG00000196839ENST00000372874ENST00000464097ENST00000492931ENST00000535573ENST00000536076ENST00000536532ENST00000537820ENST00000539235ENST00000545776CIL_0003UY_0002ENSMUSG00000017707ENSMUST00000017851ENSMUST00000129854ENSMUSG00000035268ENSMUST00000064703ENSMUST00000099105ENSMUST00000109400ENSMUST00000126182ENSMUST00000131228ENSMUST00000135537ENSMUST00000147385ENSMUST00000152418ENSMUST00000164399ENSMUSG00000087129ENSMUST00000154065
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003UY_0001ENSG00000132824ENST00000255175ENST00000342374ENST00000411544ENSG00000168734ENST00000349959ENST00000372886ENST00000372887ENST00000372892ENST00000372894ENST00000477390ENSG00000196839ENST00000372874ENST00000536532ENST00000537820ENST00000545776CIL_0003UY_0002ENSMUSG00000017707ENSMUST00000017851ENSMUST00000129854ENSMUSG00000035268ENSMUST00000064703ENSMUST00000099105ENSMUST00000109400ENSMUST00000135537ENSMUST00000147385ENSMUST00000164399ENSMUSG00000087129ENSMUST00000154065
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132824 ENST00000255175 N/A N/A 2.153±0.00 N/A N/A 4.380±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000342374 50.625±0.00 23.459±0.00 5.499±0.00 33.824±10.01 28.244±14.67 36.359±0.00 15.653±8.01 18.629±6.36 17.844±0.16 27.080±8.42 21.992±17.15 25.521±11.91 56.642±19.04 48.039±1.17
ENST00000411544 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 82.625±0.00
ENST00000468234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168734 ENST00000349959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.443±0.00 N/A N/A N/A
ENST00000372886 11.650±0.00 N/A 1.281±0.00 N/A 5.638±0.00 3.598±0.00 11.690±0.00 N/A 11.256±0.00 6.920±0.00 2.979±0.00 14.463±10.18 58.163±23.99 N/A
ENST00000372887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.859±0.00 N/A 94.903±0.00
ENST00000372889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372892 25.279±0.00 38.968±0.00 N/A 7.684±0.00 13.458±0.00 18.523±16.19 54.838±0.00 4.931±3.36 2.138±0.00 238.090±0.00 17.722±0.00 N/A 14.456±0.00 29.056±0.00
ENST00000372894 21.540±0.00 28.933±0.00 2.022±0.00 27.342±8.80 12.761±10.56 74.805±0.00 18.540±0.00 18.489±13.47 11.476±0.00 60.435±58.74 9.758±0.00 25.433±16.60 41.499±4.56 79.019±24.91
ENST00000477390 N/A N/A N/A N/A 10.519±0.00 N/A N/A N/A 13.841±0.00 N/A N/A N/A N/A N/A
ENSG00000196839 ENST00000372874 N/A N/A N/A N/A N/A N/A N/A N/A 2.244±0.00 N/A N/A 6.700±1.30 N/A N/A
ENST00000464097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.593±0.00 N/A N/A
ENST00000537820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.830±0.00 N/A N/A
ENST00000539235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.116±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017707 ENSMUST00000017851 83.388±20.77 442.464±51.95 96.777±69.15 15.301±3.65 193.372±91.94 170.770±66.83 48.187±12.74 89.005±26.83 145.299±98.81 217.879±102.95 35.350±20.16 333.055±110.93 43.354±20.66 72.144±49.81
ENSMUST00000129854 N/A N/A N/A 38.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 57.093±13.05 28.189±0.00
ENSMUSG00000035268 ENSMUST00000064703 8.897±2.03 N/A 16.511±1.04 21.434±0.83 8.546±1.42 9.321±0.00 46.006±13.96 18.529±3.40 18.559±13.73 N/A 32.587±5.82 11.139±3.37 24.922±8.24 115.065±53.19
ENSMUST00000099105 N/A N/A N/A N/A N/A N/A N/A 15.757±0.00 16.030±3.66 N/A 13.593±0.16 N/A N/A 27.545±0.00
ENSMUST00000109400 11.932±3.45 33.629±13.13 29.475±1.53 N/A 16.853±8.70 30.597±3.57 74.014±4.13 7.844±2.29 7.357±1.65 54.162±7.87 10.146±1.54 20.874±8.71 6.546±1.64 N/A
ENSMUST00000126182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135537 N/A N/A N/A 144.473±0.00 N/A N/A N/A N/A N/A N/A N/A 75.109±0.00 38.712±7.62 60.820±0.00
ENSMUST00000147385 1.292±0.11 N/A N/A 0.980±0.00 2.680±0.33 2.090±0.04 N/A N/A 0.732±0.00 3.529±0.20 N/A 3.108±0.82 1.941±0.00 N/A
ENSMUST00000152418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164399 6.722±1.03 31.639±19.11 N/A 6.594±1.72 15.580±6.72 12.739±3.59 N/A 16.625±2.41 7.181±4.22 12.183±3.28 N/A 17.735±7.16 10.600±4.01 N/A
ENSMUSG00000087129 ENSMUST00000154065 0.094±0.03 0.108±0.04 0.083±0.00 0.032±0.03 0.239±0.10 0.088±0.03 0.191±0.11 0.153±0.07 0.051±0.03 0.198±0.04 0.019±0.01 0.092±0.05 0.053±0.04 0.115±0.05

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