C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000076928-ENSG00000105404 CGP 9606 19:41883161-41959390
GeneTranscriptPositionBiotype
ENSG00000076928 (ARHGEF1)
Rho guanine nucleotide exchange factor (GEF) 1 		ENST00000337665 (ARHGEF1-006) 41884448-41907454 protein_coding
ENST00000347545 (ARHGEF1-001) 41883225-41907454 protein_coding
ENST00000354532 (ARHGEF1-005) 41883161-41907443 protein_coding
ENST00000378152 (ARHGEF1-007) 41884370-41907454 protein_coding
ENST00000593609 (ARHGEF1-023) 41906576-41907452 retained_intron
ENST00000594044 (ARHGEF1-018) 41898424-41903407 retained_intron
ENST00000594258 (ARHGEF1-017) 41897811-41902897 protein_coding
ENST00000594417 (ARHGEF1-024) 41923094-41930127 protein_coding
ENST00000594513 (ARHGEF1-026) 41928590-41929846 processed_transcript
ENST00000594521 (ARHGEF1-015) 41894292-41902030 protein_coding
ENST00000595723 (ARHGEF1-022) 41902798-41906561 protein_coding
ENST00000595770 (ARHGEF1-025) 41928820-41930150 retained_intron
ENST00000595897 (ARHGEF1-011) 41897675-41907454 retained_intron
ENST00000596957 (ARHGEF1-013) 41883224-41892528 processed_transcript
ENST00000598444 (ARHGEF1-021) 41905800-41906335 retained_intron
ENST00000598587 (ARHGEF1-020) 41905513-41905982 retained_intron
ENST00000598812 (ARHGEF1-014) 41892634-41895373 nonsense_mediated_decay
ENST00000599589 (ARHGEF1-009) 41895379-41930150 protein_coding
ENST00000599846 (ARHGEF1-010) 41883184-41907448 protein_coding
ENST00000600274 (ARHGEF1-002) 41883183-41907454 retained_intron
ENST00000600387 (ARHGEF1-012) 41883173-41890776 retained_intron
ENST00000600517 (ARHGEF1-019) 41904216-41906043 nonsense_mediated_decay
ENST00000617585 (ARHGEF1-016) 41894487-41896878 retained_intron
ENSG00000105404 (RABAC1)
Rab acceptor 1 (prenylated) 		ENST00000222008 (RABAC1-001) 41956681-41959390 protein_coding
ENST00000595226 (RABAC1-009) 41956692-41957499 retained_intron
ENST00000596171 (RABAC1-002) 41957034-41959310 retained_intron
ENST00000598057 (RABAC1-010) 41956681-41957342 retained_intron
ENST00000599219 (RABAC1-003) 41958152-41959302 retained_intron
ENST00000600292 (RABAC1-007) 41956681-41959266 protein_coding
ENST00000601028 (RABAC1-008) 41956686-41958914 protein_coding
ENST00000601078 (RABAC1-005) 41956781-41959275 protein_coding
ENST00000601476 (RABAC1-006) 41957859-41959269 retained_intron
ENST00000601891 (RABAC1-004) 41956681-41959299 protein_coding
ENSG00000268041 (CTD-2575K13.6)
 ENST00000597630 (CTD-2575K13.6-001) 41908519-41910065 processed_transcript
ENST00000598387 (CTD-2575K13.6-002) 41909377-41910097 transcribed_unprocessed_pseudogene
CIL_0003VE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040940-ENSMUSG00000003380 CGP 10090 7:24902912-24972728
GeneTranscriptPositionBiotype
ENSMUSG00000003380 (Rabac1)
Rab acceptor 1 (prenylated) 		ENSMUST00000076961 (Rabac1-201) 24969750-24972728 protein_coding
ENSMUSG00000040940 (Arhgef1)
Rho guanine nucleotide exchange factor (GEF) 1 		ENSMUST00000047873 (Arhgef1-003) 24903037-24926589 protein_coding
ENSMUST00000098683 (Arhgef1-001) 24903051-24926589 protein_coding
ENSMUST00000117419 (Arhgef1-006) 24904407-24926592 protein_coding
ENSMUST00000117796 (Arhgef1-002) 24902912-24926592 protein_coding
ENSMUST00000126484 (Arhgef1-013) 24923248-24924847 retained_intron
ENSMUST00000126918 (Arhgef1-014) 24923353-24925485 retained_intron
ENSMUST00000127761 (Arhgef1-004) 24903075-24909960 retained_intron
ENSMUST00000129383 (Arhgef1-009) 24903065-24904384 processed_transcript
ENSMUST00000129928 (Arhgef1-012) 24919202-24922379 retained_intron
ENSMUST00000132751 (Arhgef1-008) 24916831-24926106 protein_coding
ENSMUST00000132786 (Arhgef1-015) 24923363-24925936 processed_transcript
ENSMUST00000144714 (Arhgef1-011) 24912617-24918392 retained_intron
ENSMUST00000145783 (Arhgef1-005) 24904358-24926589 processed_transcript
ENSMUST00000151121 (Arhgef1-010) 24907647-24912140 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VE_0001ENSG00000076928ENST00000337665ENST00000347545ENST00000354532ENST00000378152ENST00000593609ENST00000594044ENST00000594258ENST00000594417ENST00000594513ENST00000594521ENST00000595723ENST00000595770ENST00000595897ENST00000596957ENST00000598444ENST00000598587ENST00000598812ENST00000599589ENST00000599846ENST00000600274ENST00000600387ENST00000600517ENST00000617585ENSG00000105404ENST00000222008ENST00000595226ENST00000596171ENST00000598057ENST00000599219ENST00000600292ENST00000601028ENST00000601078ENST00000601476ENST00000601891ENSG00000268041ENST00000597630ENST00000598387CIL_0003VE_0002ENSMUSG00000003380ENSMUST00000076961ENSMUSG00000040940ENSMUST00000047873ENSMUST00000098683ENSMUST00000117419ENSMUST00000117796ENSMUST00000126484ENSMUST00000126918ENSMUST00000127761ENSMUST00000129383ENSMUST00000129928ENSMUST00000132751ENSMUST00000132786ENSMUST00000144714ENSMUST00000145783ENSMUST00000151121
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VE_0001ENSG00000076928ENST00000337665ENST00000347545ENST00000354532ENST00000378152ENST00000594044ENST00000594258ENST00000595897ENST00000598812ENST00000599846ENST00000600274ENST00000600387ENSG00000105404ENST00000222008ENST00000598057ENST00000600292ENST00000601078ENST00000601476ENSG00000268041ENST00000597630ENST00000598387CIL_0003VE_0002ENSMUSG00000003380ENSMUST00000076961ENSMUSG00000040940ENSMUST00000047873ENSMUST00000098683ENSMUST00000117419ENSMUST00000117796ENSMUST00000129928ENSMUST00000132751ENSMUST00000132786ENSMUST00000144714ENSMUST00000145783
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000076928 ENST00000337665 N/A N/A N/A N/A N/A N/A N/A 0.818±0.00 1.837±0.00 N/A N/A 8.133±6.22 15.351±5.41 3.860±0.00
ENST00000347545 N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A 2.053±0.00 N/A 10.575±2.26 10.801±0.00 3.008±0.00
ENST00000354532 29.432±0.00 54.017±0.00 0.455±0.00 0.187±0.00 7.252±4.85 7.031±0.00 1.412±1.07 17.781±0.00 3.824±0.00 17.391±0.00 1.938±0.00 14.683±0.00 15.423±0.00 7.024±0.00
ENST00000378152 N/A N/A N/A 0.133±0.00 0.768±0.00 3.440±0.00 0.171±0.00 N/A N/A N/A N/A 5.274±0.00 N/A N/A
ENST00000593609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.434±15.86 N/A N/A
ENST00000594258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A N/A
ENST00000594417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000594521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595897 N/A 62.432±0.00 0.611±0.00 3.673±0.00 N/A N/A 1.403±0.00 N/A 2.230±0.00 7.157±5.51 N/A 4.808±0.00 N/A 5.452±0.00
ENST00000596957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598812 N/A N/A N/A N/A 3.635±0.00 N/A N/A N/A N/A N/A 0.384±0.00 N/A N/A N/A
ENST00000599589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599846 N/A N/A N/A 3.016±0.00 N/A 3.464±0.00 1.184±0.00 N/A N/A 10.010±0.00 1.456±0.00 N/A N/A N/A
ENST00000600274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A N/A
ENST00000600387 N/A N/A 0.350±0.00 0.222±0.00 N/A 0.876±0.00 0.141±0.00 0.441±0.00 1.213±0.00 N/A N/A N/A N/A N/A
ENST00000600517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617585 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000105404 ENST00000222008 121.445±0.00 154.415±0.00 3.304±0.00 54.019±38.69 55.591±47.68 75.566±70.56 11.271±10.33 67.893±60.13 48.332±42.54 63.181±57.56 25.312±19.73 97.851±45.69 113.613±7.13 120.294±40.30
ENST00000595226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000596171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000598057 N/A N/A N/A N/A N/A 3.153±0.00 N/A N/A N/A N/A N/A 0.639±0.00 N/A N/A
ENST00000599219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600292 47.530±0.00 N/A N/A N/A 22.588±0.00 N/A 7.488±0.00 N/A 45.130±0.00 24.363±0.00 7.623±0.00 23.076±0.00 58.081±2.58 N/A
ENST00000601028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601078 N/A N/A N/A N/A N/A N/A 4.289±0.00 N/A N/A N/A 1.319±0.00 N/A N/A N/A
ENST00000601476 N/A N/A 0.757±0.00 N/A N/A N/A 0.694±0.00 N/A 2.554±0.00 N/A N/A N/A N/A N/A
ENST00000601891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000268041 ENST00000597630 0.252±0.00 0.995±0.00 N/A 0.877±0.00 N/A N/A 0.040±0.00 N/A N/A 1.094±0.00 0.143±0.00 0.350±0.17 N/A 1.232±0.64
ENST00000598387 0.320±0.00 N/A N/A 0.611±0.00 0.847±0.00 N/A N/A 0.083±0.00 N/A N/A N/A 0.989±0.61 0.404±0.17 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003380 ENSMUST00000076961 237.016±40.25 364.333±32.87 224.516±29.34 73.827±36.00 278.813±79.84 185.689±26.15 190.556±23.63 261.804±21.38 79.396±21.38 406.344±50.24 110.993±7.18 270.803±128.05 81.568±48.86 99.098±48.26
ENSMUSG00000040940 ENSMUST00000047873 26.891±5.24 21.318±1.96 19.686±4.36 12.716±0.08 50.481±16.52 11.867±4.86 5.901±1.83 10.796±2.53 11.301±5.11 33.022±2.39 2.517±0.57 24.446±10.62 47.903±40.88 3.224±0.92
ENSMUST00000098683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.409±0.52 N/A N/A N/A
ENSMUST00000117419 N/A N/A N/A 10.019±0.00 N/A 10.978±2.57 N/A 5.814±0.00 4.718±0.77 N/A 3.743±0.60 18.760±1.94 20.640±11.52 3.438±0.20
ENSMUST00000117796 N/A N/A N/A 10.441±0.00 N/A N/A N/A N/A N/A N/A 3.897±1.70 N/A N/A N/A
ENSMUST00000126484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129928 N/A N/A N/A 29.404±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132751 N/A N/A N/A 16.636±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132786 N/A N/A N/A N/A N/A N/A N/A N/A 18.959±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144714 N/A N/A N/A N/A 32.322±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145783 10.390±0.59 9.515±1.11 7.601±0.00 N/A 48.215±30.65 6.471±0.81 7.219±2.83 8.066±2.55 4.253±1.87 28.860±4.09 3.014±1.95 12.724±3.54 12.605±7.73 2.035±1.01
ENSMUST00000151121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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