C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000150361-ENSG00000276644 CGP 9606 13:69700594-71867192
GeneTranscriptPositionBiotype
ENSG00000150361 (KLHL1)
kelch-like family member 1 		ENST00000377844 (KLHL1-001) 69700594-70108459 protein_coding
ENST00000545028 (KLHL1-201) 69700594-70108493 protein_coding
ENSG00000225801 (RABEPKP1)
Rab9 effector protein with kelch motifs pseudogene 1 		ENST00000440529 (RABEPKP1-001) 71296210-71297235 processed_pseudogene
ENSG00000226554 (MTCL1P1)
MTCL1 pseudogene 1 		ENST00000446207 (MTCL1P1-001) 70923664-70924455 processed_pseudogene
ENSG00000226846 (LINC00348)
long intergenic non-protein coding RNA 348 		ENST00000428761 (LINC00348-001) 71015141-71168417 lincRNA
ENSG00000230223 (ATXN8OS)
ATXN8 opposite strand (non-protein coding) 		ENST00000414504 (ATXN8OS-002) 70107213-70139429 antisense
ENST00000424524 (ATXN8OS-001) 70107912-70131546 antisense
ENSG00000232314 (PSMC1P13)
proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13 		ENST00000458195 (PSMC1P13-001) 69894101-69895085 processed_pseudogene
ENSG00000233460 (RPL35AP31)
ribosomal protein L35a pseudogene 31 		ENST00000418340 (RPL35AP31-001) 71845981-71846317 processed_pseudogene
ENSG00000236534 (H3F3BP1)
H3 histone, family 3B (H3.3B) pseudogene 1 		ENST00000440551 (H3F3BP1-001) 71675067-71675469 processed_pseudogene
ENSG00000237816 (RPL21P109)
ribosomal protein L21 pseudogene 109 		ENST00000422213 (RPL21P109-001) 71704181-71704655 processed_pseudogene
ENSG00000276644 (DACH1)
dachshund family transcription factor 1 		ENST00000611519 (DACH1-201) 71437966-71867192 protein_coding
ENST00000613252 (DACH1-001) 71437966-71867192 protein_coding
ENST00000619232 (DACH1-002) 71439946-71866769 protein_coding
ENST00000620444 (DACH1-202) 71437966-71867192 protein_coding

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003VF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022076-ENSMUSG00000055639 CGP 10090 14:96105259-98169765
GeneTranscriptPositionBiotype
ENSMUSG00000022076 (Klhl1)
kelch-like 1 		ENSMUST00000022666 (Klhl1-001) 96105259-96519102 protein_coding
ENSMUSG00000055639 (Dach1)
dachshund 1 (Drosophila) 		ENSMUST00000069334 (Dach1-002) 97786853-98169543 protein_coding
ENSMUST00000071533 (Dach1-001) 97786853-98169543 protein_coding
ENSMUST00000156684 (Dach1-003) 97825866-98169765 retained_intron
ENSMUSG00000083933 (Gm15515)
predicted gene 15515 		ENSMUST00000117827 (Gm15515-001) 96231953-96232774 processed_pseudogene
ENSMUSG00000086133 (Gm16331)
predicted gene 16331 		ENSMUST00000144274 (Gm16331-001) 98118509-98119006 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VF_0001ENSG00000150361ENST00000377844ENST00000545028ENSG00000225801ENST00000440529ENSG00000226554ENST00000446207ENSG00000226846ENST00000428761ENSG00000230223ENST00000414504ENST00000424524ENSG00000232314ENST00000458195ENSG00000233460ENST00000418340ENSG00000236534ENST00000440551ENSG00000237816ENST00000422213ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0003VF_0002ENSMUSG00000022076ENSMUST00000022666ENSMUSG00000055639ENSMUST00000069334ENSMUST00000071533ENSMUST00000156684ENSMUSG00000083933ENSMUST00000117827ENSMUSG00000086133ENSMUST00000144274
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VF_0001ENSG00000150361ENST00000377844ENST00000545028ENSG00000225801ENST00000440529ENSG00000226554ENST00000446207ENSG00000226846ENST00000428761ENSG00000230223ENST00000414504ENSG00000232314ENST00000458195ENSG00000233460ENST00000418340ENSG00000236534ENST00000440551ENSG00000237816ENST00000422213ENSG00000276644ENST00000611519ENST00000613252ENST00000619232ENST00000620444CIL_0003VF_0002ENSMUSG00000022076ENSMUST00000022666ENSMUSG00000055639ENSMUST00000069334ENSMUST00000071533ENSMUST00000156684ENSMUSG00000083933ENSMUST00000117827ENSMUSG00000086133ENSMUST00000144274
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000150361 ENST00000377844 N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545028 N/A N/A 0.065±0.00 0.240±0.00 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.010±0.00 0.131±0.05
ENSG00000225801 ENST00000440529 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226554 ENST00000446207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00
ENSG00000226846 ENST00000428761 N/A 0.009±0.00 N/A 0.042±0.00 0.031±0.00 N/A 0.025±0.00 N/A 0.058±0.00 N/A N/A N/A N/A 0.392±0.00
ENSG00000230223 ENST00000414504 N/A 0.014±0.00 N/A N/A 0.015±0.00 0.171±0.00 N/A 0.044±0.00 N/A 0.014±0.00 N/A 0.015±0.00 N/A N/A
ENST00000424524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000232314 ENST00000458195 N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233460 ENST00000418340 N/A N/A 0.260±0.00 0.185±0.00 1.038±0.87 0.054±0.00 0.106±0.00 N/A N/A 0.583±0.26 N/A 0.140±0.00 N/A N/A
ENSG00000236534 ENST00000440551 0.195±0.00 N/A N/A 0.153±0.00 0.053±0.00 N/A 0.105±0.00 0.106±0.00 N/A 0.098±0.00 0.088±0.00 N/A 0.172±0.00 0.218±0.03
ENSG00000237816 ENST00000422213 0.103±0.00 N/A 0.280±0.00 N/A N/A N/A N/A N/A 0.048±0.00 0.025±0.00 N/A N/A N/A N/A
ENSG00000276644 ENST00000611519 N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000613252 1.502±0.00 0.298±0.00 1.199±0.00 0.564±0.41 0.208±0.00 0.917±0.38 0.300±0.19 2.702±0.00 0.047±0.00 1.081±0.67 0.218±0.00 0.446±0.14 1.578±0.60 1.557±0.05
ENST00000619232 0.709±0.00 N/A N/A 0.376±0.00 N/A N/A 0.197±0.00 0.272±0.00 0.247±0.00 N/A 0.068±0.00 0.662±0.00 1.305±0.00 5.839±4.43
ENST00000620444 N/A N/A N/A N/A 0.147±0.00 0.234±0.00 0.077±0.00 0.349±0.00 N/A 0.447±0.00 0.116±0.00 0.153±0.02 0.982±0.00 0.813±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022076 ENSMUST00000022666 N/A N/A 0.008±0.00 2.566±0.93 N/A 0.019±0.00 N/A 0.021±0.00 N/A N/A N/A 0.039±0.03 N/A 0.014±0.01
ENSMUSG00000055639 ENSMUST00000069334 1.158±0.32 0.748±0.19 1.402±0.07 4.642±2.78 1.201±0.46 0.380±0.05 0.839±0.17 1.071±0.51 0.106±0.08 2.687±0.47 0.742±0.18 2.084±0.42 0.110±0.06 0.139±0.09
ENSMUST00000071533 0.699±0.29 0.544±0.02 0.697±0.16 1.998±1.10 0.439±0.18 0.314±0.12 0.514±0.10 1.263±0.23 0.066±0.06 1.617±0.27 0.400±0.00 1.184±0.60 N/A 0.158±0.01
ENSMUST00000156684 0.390±0.13 0.392±0.01 N/A N/A 0.712±0.12 0.311±0.02 0.398±0.00 0.861±0.37 0.027±0.00 2.034±0.19 N/A 2.132±1.08 0.018±0.00 0.068±0.00
ENSMUSG00000083933 ENSMUST00000117827 N/A N/A N/A 0.047±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.16
ENSMUSG00000086133 ENSMUST00000144274 N/A N/A 0.023±0.00 0.104±0.03 N/A N/A N/A N/A N/A 0.258±0.05 0.044±0.00 0.080±0.00 N/A N/A

Loading