C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101489-ENSG00000078142 CGP 9606 18:37243047-42087830
GeneTranscriptPositionBiotype
ENSG00000078142 (PIK3C3)
phosphatidylinositol 3-kinase, catalytic subunit type 3 		ENST00000262039 (PIK3C3-001) 41955206-42087830 protein_coding
ENST00000398870 (PIK3C3-002) 41955254-42087830 protein_coding
ENST00000585528 (PIK3C3-007) 41955418-41970499 protein_coding
ENST00000586545 (PIK3C3-003) 41955256-41971443 protein_coding
ENST00000587261 (PIK3C3-011) 42057638-42067410 retained_intron
ENST00000587328 (PIK3C3-015) 42064695-42081396 retained_intron
ENST00000587402 (PIK3C3-012) 42037772-42049975 protein_coding
ENST00000588156 (PIK3C3-014) 42057835-42081421 retained_intron
ENST00000588631 (PIK3C3-013) 42049292-42081184 retained_intron
ENST00000589056 (PIK3C3-005) 42037750-42051313 protein_coding
ENST00000589550 (PIK3C3-009) 41957667-41990602 retained_intron
ENST00000590013 (PIK3C3-010) 42025782-42037817 processed_transcript
ENST00000590220 (PIK3C3-006) 41955262-41957758 processed_transcript
ENST00000591011 (PIK3C3-008) 41957639-41987875 nonsense_mediated_decay
ENST00000593098 (PIK3C3-004) 42025331-42081479 retained_intron
ENST00000597477 (PIK3C3-019) 42033842-42049683 protein_coding
ENSG00000101489 (CELF4)
CUGBP, Elav-like family member 4 		ENST00000334919 (CELF4-002) 37243047-37565641 protein_coding
ENST00000361795 (CELF4-023) 37244968-37565765 protein_coding
ENST00000420428 (CELF4-201) 37243047-37566037 protein_coding
ENST00000586009 (CELF4-016) 37243047-37270920 protein_coding
ENST00000587074 (CELF4-010) 37266533-37273584 processed_transcript
ENST00000587449 (CELF4-012) 37528967-37565608 processed_transcript
ENST00000587657 (CELF4-015) 37259180-37273043 protein_coding
ENST00000587819 (CELF4-008) 37273101-37485857 protein_coding
ENST00000587911 (CELF4-017) 37245004-37264754 protein_coding
ENST00000587924 (CELF4-007) 37274865-37486034 protein_coding
ENST00000588591 (CELF4-013) 37243047-37273043 protein_coding
ENST00000588597 (CELF4-003) 37259044-37565651 protein_coding
ENST00000589229 (CELF4-009) 37273109-37485747 protein_coding
ENST00000589386 (CELF4-011) 37253855-37273043 protein_coding
ENST00000590011 (CELF4-018) 37244834-37253981 processed_transcript
ENST00000590112 (CELF4-005) 37244614-37485576 nonsense_mediated_decay
ENST00000591282 (CELF4-004) 37253811-37565641 protein_coding
ENST00000591287 (CELF4-001) 37243047-37565748 protein_coding
ENST00000591421 (CELF4-006) 37266217-37273158 retained_intron
ENST00000593271 (CELF4-014) 37253838-37273043 protein_coding
ENST00000601019 (CELF4-021) 37244968-37565748 protein_coding
ENST00000601392 (CELF4-020) 37273053-37565748 protein_coding
ENST00000603232 (CELF4-022) 37244980-37565827 protein_coding
ENSG00000175886 (RPL7AP66)
ribosomal protein L7a pseudogene 66 		ENST00000588490 (RPL7AP66-001) 39334872-39335672 processed_pseudogene
ENSG00000225253 (AC011225.1)
 ENST00000457751 (AC011225.1-001) 41819053-41819421 processed_pseudogene
ENSG00000261715 (LINC01477)
long intergenic non-protein coding RNA 1477 		ENST00000566101 (LINC01477-001) 40066286-40099233 lincRNA
ENSG00000267313 (KC6)
keratoconus gene 6 		ENST00000592302 (KC6-001) 41480271-41520597 lincRNA
ENST00000593577 (KC6-004) 41516420-41632128 lincRNA
ENST00000595135 (KC6-003) 41482476-41632185 lincRNA
ENST00000596923 (KC6-002) 41516142-41520596 lincRNA
ENST00000599934 (KC6-006) 41521338-41632124 lincRNA
ENST00000600183 (KC6-009) 41521198-41632075 lincRNA
ENST00000600644 (KC6-008) 41465783-41481068 lincRNA
ENST00000601445 (KC6-007) 41501004-41520594 lincRNA
ENST00000601523 (KC6-005) 41513688-41520677 lincRNA
ENSG00000267374 (LINC00669)
long intergenic non-protein coding RNA 669 		ENST00000591469 (LINC00669-002) 39207627-39340638 lincRNA
ENST00000591629 (LINC00669-001) 39206924-39800318 lincRNA
ENSG00000267413 (RP11-636O21.1)
 ENST00000585822 (RP11-636O21.1-001) 39841174-39924840 lincRNA
ENSG00000267652 (RP11-188I24.1)
 ENST00000588959 (RP11-188I24.1-001) 41789162-41789395 processed_pseudogene
ENSG00000267664 (RPL17P45)
ribosomal protein L17 pseudogene 45 		ENST00000586289 (RPL17P45-001) 40143926-40144504 processed_pseudogene
ENSG00000267707 (RP11-95O2.5)
 ENST00000589281 (RP11-95O2.5-001) 37243776-37247506 antisense
ENSG00000268566 (RP11-687D19.1)
 ENST00000597142 (RP11-687D19.1-001) 38655209-38670994 lincRNA
ENST00000597906 (RP11-687D19.1-002) 38655219-38660775 lincRNA
ENST00000598549 (RP11-687D19.1-003) 38659249-38687998 lincRNA
ENSG00000276174 (RP11-687E1.2)
 ENST00000611384 (RP11-687E1.2-001) 42052705-42053030 sense_intronic
ENSG00000279034 (RP11-5A1.1)
 ENST00000624119 (RP11-5A1.1-001) 40062903-40066471 TEC
ENSG00000279543 (RP11-1147P1.1)
 ENST00000624553 (RP11-1147P1.1-001) 37473330-37473977 TEC
ENSG00000279678 (RP11-797E24.1)
 ENST00000623010 (RP11-797E24.1-001) 37305295-37306333 TEC
CIL_0003VI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024268-ENSMUSG00000033628 CGP 10090 18:25477632-30348126
GeneTranscriptPositionBiotype
ENSMUSG00000024268 (Celf4)
CUGBP, Elav-like family member 4 		ENSMUST00000025117 (Celf4-201) 25477632-25753983 protein_coding
ENSMUST00000115816 (Celf4-202) 25477632-25753983 protein_coding
ENSMUSG00000033628 (Pik3c3)
phosphoinositide-3-kinase, class 3 		ENSMUST00000091978 (Pik3c3-003) 30272872-30343116 protein_coding
ENSMUST00000115811 (Pik3c3-004) 30272870-30330968 protein_coding
ENSMUST00000115812 (Pik3c3-001) 30272747-30348126 protein_coding
ENSMUST00000131405 (Pik3c3-002) 30272927-30348120 nonsense_mediated_decay
ENSMUSG00000046636 (Gm7729)
predicted gene 7729 		ENSMUST00000050143 (Gm7729-001) 27598644-27599756 unprocessed_pseudogene
ENSMUSG00000084537 (Gm25845)
predicted gene, 25845 		ENSMUST00000122588 (Gm25845-201) 25598145-25598454 misc_RNA
ENSMUSG00000087121 (Gm7847)
predicted gene 7847 		ENSMUST00000151645 (Gm7847-001) 25823581-25824357 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078142 ENST00000262039 1.526±0.00 2.590±0.00 0.772±0.00 4.761±0.61 1.681±0.49 1.077±0.04 0.922±0.55 0.725±0.00 N/A 1.278±0.91 0.978±0.28 1.175±0.52 0.940±0.60 1.608±0.06
ENST00000398870 N/A N/A N/A N/A N/A N/A N/A 1.688±0.00 2.382±0.00 N/A N/A 0.347±0.00 0.315±0.03 1.175±0.00
ENST00000585528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.691±0.00 N/A N/A N/A
ENST00000587402 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.536±0.00 N/A N/A N/A N/A
ENST00000588156 N/A N/A N/A N/A N/A 6.500±0.00 N/A 6.758±0.00 3.958±0.00 2.832±0.00 N/A 9.438±0.00 5.568±0.68 16.214±0.00
ENST00000588631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.433±0.00 7.838±0.00 11.317±0.00
ENST00000590013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.201±0.00 14.249±0.00 20.109±0.00
ENST00000590220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593098 N/A N/A 0.919±0.00 N/A 1.871±0.00 N/A 0.508±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000597477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.187±0.00 N/A
ENSG00000101489 ENST00000334919 N/A N/A N/A 3.187±0.00 N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A
ENST00000361795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420428 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A 0.014±0.00 0.194±0.00 N/A 0.454±0.00
ENST00000586009 N/A N/A N/A N/A 0.064±0.00 0.266±0.00 N/A N/A N/A 0.033±0.00 N/A 0.037±0.03 0.131±0.00 0.978±0.00
ENST00000587074 N/A N/A N/A N/A N/A N/A N/A N/A 1.040±0.00 N/A N/A N/A N/A N/A
ENST00000587449 0.105±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587657 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588591 N/A N/A N/A 2.180±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589229 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589386 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590011 0.148±0.00 N/A N/A N/A N/A N/A 0.054±0.00 N/A N/A 0.283±0.00 N/A N/A N/A N/A
ENST00000590112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591287 N/A N/A N/A 5.103±2.14 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591421 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.221±0.00 N/A N/A N/A N/A
ENST00000593271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601019 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601392 N/A N/A N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603232 N/A N/A N/A 23.038±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000175886 ENST00000588490 0.121±0.00 0.235±0.00 N/A 0.079±0.04 0.123±0.07 0.174±0.08 0.024±0.00 0.138±0.00 0.024±0.00 0.124±0.09 0.230±0.00 0.063±0.03 0.071±0.01 0.147±0.03
ENSG00000225253 ENST00000457751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00
ENSG00000261715 ENST00000566101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.09
ENSG00000267313 ENST00000592302 N/A N/A N/A 0.063±0.00 N/A 0.020±0.00 N/A 0.256±0.00 N/A N/A N/A 0.060±0.05 N/A 0.025±0.01
ENST00000593577 N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000595135 0.023±0.00 N/A N/A N/A 0.051±0.00 N/A N/A N/A 0.086±0.00 0.210±0.00 N/A 0.121±0.00 N/A N/A
ENST00000596923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600183 N/A N/A 0.535±0.00 N/A 0.103±0.00 0.125±0.00 N/A N/A N/A N/A N/A N/A 0.100±0.01 N/A
ENST00000600644 N/A N/A N/A 0.008±0.00 0.027±0.00 N/A N/A 0.345±0.00 0.008±0.00 N/A N/A 0.027±0.00 0.038±0.00 0.034±0.00
ENST00000601445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000601523 N/A N/A N/A N/A 0.048±0.00 N/A 0.093±0.07 0.072±0.00 N/A N/A N/A N/A 0.096±0.01 N/A
ENSG00000267374 ENST00000591469 0.041±0.00 N/A N/A 0.036±0.02 0.039±0.00 N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.018±0.00 0.682±0.00
ENST00000591629 0.039±0.00 0.008±0.00 N/A N/A 0.093±0.00 0.249±0.00 N/A N/A 0.081±0.00 N/A N/A 0.034±0.01 0.073±0.03 0.491±0.18
ENSG00000267413 ENST00000585822 0.067±0.00 0.159±0.00 N/A 0.041±0.02 0.072±0.00 N/A 0.181±0.00 0.073±0.00 0.079±0.00 0.017±0.00 N/A 0.072±0.00 0.420±0.28 0.182±0.04
ENSG00000267652 ENST00000588959 0.409±0.00 0.240±0.00 N/A 0.346±0.00 0.170±0.00 1.183±0.00 0.165±0.00 0.287±0.00 0.160±0.00 0.495±0.00 0.109±0.00 3.605±0.00 N/A 0.582±0.00
ENSG00000267664 ENST00000586289 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A
ENSG00000267707 ENST00000589281 N/A 0.536±0.00 N/A N/A N/A 0.122±0.00 0.065±0.00 0.490±0.00 0.075±0.00 0.459±0.20 N/A 0.753±0.46 0.299±0.00 4.541±1.65
ENSG00000268566 ENST00000597142 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A 0.078±0.00 N/A 0.209±0.04
ENST00000597906 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.918±0.00 N/A N/A N/A N/A
ENST00000598549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276174 ENST00000611384 N/A 0.060±0.00 0.479±0.00 0.030±0.00 N/A 1.558±1.38 0.228±0.00 N/A N/A 0.068±0.00 N/A 0.687±0.72 0.164±0.00 0.419±0.00
ENSG00000279034 ENST00000624119 N/A N/A N/A 0.003±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.009±0.00 0.076±0.07
ENSG00000279543 ENST00000624553 N/A N/A N/A 0.160±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279678 ENST00000623010 N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024268 ENSMUST00000025117 0.337±0.05 2.943±1.56 0.378±0.00 66.205±17.34 0.542±0.26 1.987±0.64 0.127±0.05 0.127±0.04 0.104±0.09 0.179±0.13 0.034±0.02 0.617±0.41 0.276±0.30 0.631±0.25
ENSMUST00000115816 N/A 1.297±0.36 0.170±0.07 15.494±0.43 0.296±0.04 0.556±0.11 N/A 0.090±0.03 0.061±0.05 0.132±0.05 N/A 0.189±0.07 N/A 0.389±0.18
ENSMUSG00000033628 ENSMUST00000091978 N/A 0.484±0.13 N/A 2.532±0.00 0.514±0.00 N/A N/A N/A N/A N/A N/A 1.754±1.32 1.477±0.00 2.105±0.00
ENSMUST00000115811 N/A 0.274±0.00 N/A N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A 0.812±0.32 N/A 0.302±0.00
ENSMUST00000115812 5.153±0.70 0.978±0.32 11.589±0.61 11.239±2.95 3.390±1.32 3.580±1.37 3.138±0.19 4.773±0.09 3.586±1.82 4.719±0.29 4.447±0.25 3.664±3.69 7.583±1.22 2.722±0.25
ENSMUST00000131405 N/A 0.880±0.00 N/A N/A 1.429±0.00 0.944±0.39 N/A N/A 0.521±0.17 N/A N/A 2.419±1.40 N/A N/A
ENSMUSG00000046636 ENSMUST00000050143 0.058±0.00 N/A 1.317±1.31 1.511±2.10 N/A N/A N/A 0.060±0.00 3.853±3.87 0.234±0.00 N/A 0.063±0.01 0.094±0.11 0.052±0.00
ENSMUSG00000084537 ENSMUST00000122588 N/A N/A 0.056±0.00 1.906±1.65 N/A N/A N/A N/A 0.205±0.14 0.368±0.15 N/A N/A 0.348±0.22 N/A
ENSMUSG00000087121 ENSMUST00000151645 0.049±0.00 0.107±0.00 0.006±0.00 0.079±0.04 N/A 0.095±0.00 N/A 0.049±0.00 0.065±0.06 N/A N/A 0.081±0.00 0.073±0.00 0.043±0.00

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