| Source ID |
Type |
Tax ID |
Position |
| ENSMUSG00000009079-ENSMUSG00000034175 |
CGP |
10090 |
11:5069689-5106093  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0003VR_0002 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000020465' => 'Ewing sarcoma breakpoint region 1b',
'ENSDARG00000079816' => 'rhomboid domain containing 3',
'ENSMUSG00000009079' => 'Ewing sarcoma breakpoint region 1',
'ENSMUSG00000034175' => 'rhomboid domain containing 3'
),
'gene_name_arr' => array(
'ENSDARG00000020465' => 'ewsr1b',
'ENSDARG00000079816' => 'rhbdd3',
'ENSMUSG00000009079' => 'Ewsr1',
'ENSMUSG00000034175' => 'Rhbdd3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 18 => 'Breast',
(int) 20 => 'Colon',
(int) 22 => 'Heart',
(int) 30 => 'Kidney',
(int) 38 => 'Liver',
(int) 45 => 'Lung',
(int) 47 => 'Muscle',
(int) 52 => 'Ovary',
(int) 56 => 'Placenta',
(int) 62 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000003998' => array(
'start' => '26542495',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-001'
),
'ENSDART00000057248' => array(
'start' => '26542496',
'end' => '26551282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-201'
),
'ENSDART00000127773' => array(
'start' => '26542131',
'end' => '26551292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-002'
),
'ENSDART00000139998' => array(
'start' => '26546611',
'end' => '26549873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ewsr1b-005'
),
'ENSDART00000143851' => array(
'start' => '26544845',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-004'
),
'ENSDART00000146742' => array(
'start' => '26543218',
'end' => '26545005',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ewsr1b-003'
),
'ENSDART00000111302' => array(
'start' => '26551568',
'end' => '26555532',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rhbdd3-001'
),
'ENSMUST00000063232' => array(
'start' => '5090459',
'end' => '5099096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-010'
),
'ENSMUST00000073308' => array(
'start' => '5069698',
'end' => '5099067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-007'
),
'ENSMUST00000079949' => array(
'start' => '5069689',
'end' => '5099266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-002'
),
'ENSMUST00000093365' => array(
'start' => '5080418',
'end' => '5099066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-004'
),
'ENSMUST00000102930' => array(
'start' => '5069897',
'end' => '5099042',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-009'
),
'ENSMUST00000130060' => array(
'start' => '5070690',
'end' => '5072220',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-005'
),
'ENSMUST00000130118' => array(
'start' => '5069974',
'end' => '5070891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-003'
),
'ENSMUST00000139886' => array(
'start' => '5071520',
'end' => '5079899',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-013'
),
'ENSMUST00000141002' => array(
'start' => '5071107',
'end' => '5079528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-012'
),
'ENSMUST00000144238' => array(
'start' => '5082022',
'end' => '5086036',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-011'
),
'ENSMUST00000150168' => array(
'start' => '5071520',
'end' => '5082340',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-006'
),
'ENSMUST00000151497' => array(
'start' => '5071417',
'end' => '5078521',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-001'
),
'ENSMUST00000151847' => array(
'start' => '5093532',
'end' => '5099067',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-008'
),
'ENSMUST00000036320' => array(
'start' => '5099439',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-002'
),
'ENSMUST00000101610' => array(
'start' => '5098926',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-001'
),
'ENSMUST00000109878' => array(
'start' => '5100157',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-201'
),
'ENSMUST00000129016' => array(
'start' => '5100237',
'end' => '5106093',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-009'
),
'ENSMUST00000134267' => array(
'start' => '5099433',
'end' => '5103349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-005'
),
'ENSMUST00000137370' => array(
'start' => '5099077',
'end' => '5100587',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-008'
),
'ENSMUST00000139742' => array(
'start' => '5099608',
'end' => '5103260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-006'
),
'ENSMUST00000146879' => array(
'start' => '5099273',
'end' => '5100507',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-007'
),
'ENSMUST00000148761' => array(
'start' => '5100170',
'end' => '5105228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-004'
),
'ENSMUST00000150632' => array(
'start' => '5099476',
'end' => '5103254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-003'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
'ENSDARG00000020465' => array(
[maximum depth reached]
),
'ENSDARG00000079816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Brain',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000020465' => 'Ewing sarcoma breakpoint region 1b',
'ENSDARG00000079816' => 'rhomboid domain containing 3',
'ENSMUSG00000009079' => 'Ewing sarcoma breakpoint region 1',
'ENSMUSG00000034175' => 'rhomboid domain containing 3'
)
$gene_name_arr = array(
'ENSDARG00000020465' => 'ewsr1b',
'ENSDARG00000079816' => 'rhbdd3',
'ENSMUSG00000009079' => 'Ewsr1',
'ENSMUSG00000034175' => 'Rhbdd3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0001',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '26542131',
'seq_end' => '26555532',
'region_length' => '13401',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000020465-ENSDARG00000079816'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '5069689',
'seq_end' => '5106093',
'region_length' => '36404',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000009079-ENSMUSG00000034175'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 18 => 'Breast',
(int) 20 => 'Colon',
(int) 22 => 'Heart',
(int) 30 => 'Kidney',
(int) 38 => 'Liver',
(int) 45 => 'Lung',
(int) 47 => 'Muscle',
(int) 52 => 'Ovary',
(int) 56 => 'Placenta',
(int) 62 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000003998' => array(
'start' => '26542495',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-001'
),
'ENSDART00000057248' => array(
'start' => '26542496',
'end' => '26551282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-201'
),
'ENSDART00000127773' => array(
'start' => '26542131',
'end' => '26551292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-002'
),
'ENSDART00000139998' => array(
'start' => '26546611',
'end' => '26549873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ewsr1b-005'
),
'ENSDART00000143851' => array(
'start' => '26544845',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-004'
),
'ENSDART00000146742' => array(
'start' => '26543218',
'end' => '26545005',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ewsr1b-003'
),
'ENSDART00000111302' => array(
'start' => '26551568',
'end' => '26555532',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rhbdd3-001'
),
'ENSMUST00000063232' => array(
'start' => '5090459',
'end' => '5099096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-010'
),
'ENSMUST00000073308' => array(
'start' => '5069698',
'end' => '5099067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-007'
),
'ENSMUST00000079949' => array(
'start' => '5069689',
'end' => '5099266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-002'
),
'ENSMUST00000093365' => array(
'start' => '5080418',
'end' => '5099066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-004'
),
'ENSMUST00000102930' => array(
'start' => '5069897',
'end' => '5099042',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-009'
),
'ENSMUST00000130060' => array(
'start' => '5070690',
'end' => '5072220',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-005'
),
'ENSMUST00000130118' => array(
'start' => '5069974',
'end' => '5070891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-003'
),
'ENSMUST00000139886' => array(
'start' => '5071520',
'end' => '5079899',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-013'
),
'ENSMUST00000141002' => array(
'start' => '5071107',
'end' => '5079528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-012'
),
'ENSMUST00000144238' => array(
'start' => '5082022',
'end' => '5086036',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-011'
),
'ENSMUST00000150168' => array(
'start' => '5071520',
'end' => '5082340',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-006'
),
'ENSMUST00000151497' => array(
'start' => '5071417',
'end' => '5078521',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-001'
),
'ENSMUST00000151847' => array(
'start' => '5093532',
'end' => '5099067',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-008'
),
'ENSMUST00000036320' => array(
'start' => '5099439',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-002'
),
'ENSMUST00000101610' => array(
'start' => '5098926',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-001'
),
'ENSMUST00000109878' => array(
'start' => '5100157',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-201'
),
'ENSMUST00000129016' => array(
'start' => '5100237',
'end' => '5106093',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-009'
),
'ENSMUST00000134267' => array(
'start' => '5099433',
'end' => '5103349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-005'
),
'ENSMUST00000137370' => array(
'start' => '5099077',
'end' => '5100587',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-008'
),
'ENSMUST00000139742' => array(
'start' => '5099608',
'end' => '5103260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-006'
),
'ENSMUST00000146879' => array(
'start' => '5099273',
'end' => '5100507',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-007'
),
'ENSMUST00000148761' => array(
'start' => '5100170',
'end' => '5105228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-004'
),
'ENSMUST00000150632' => array(
'start' => '5099476',
'end' => '5103254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-003'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
'ENSDARG00000020465' => array(
[maximum depth reached]
),
'ENSDARG00000079816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Brain',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '5069689',
'seq_end' => '5106093',
'region_length' => '36404',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000009079-ENSMUSG00000034175'
)
)
$gene_el = array(
'ENSDART00000111302' => array(
'Brain' => array(
'average_FPKM' => '3.914',
'stddev_FPKM' => '0.58'
),
'Heart' => array(
'average_FPKM' => '0.975',
'stddev_FPKM' => '0.52'
),
'Kidney' => array(
'average_FPKM' => '1.551',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.462',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000079816'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '3.914',
'stddev_FPKM' => '0.58'
),
'Heart' => array(
'average_FPKM' => '0.975',
'stddev_FPKM' => '0.52'
),
'Kidney' => array(
'average_FPKM' => '1.551',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.462',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000111302'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSDARG00000020465' => 'Ewing sarcoma breakpoint region 1b',
'ENSDARG00000079816' => 'rhomboid domain containing 3',
'ENSMUSG00000009079' => 'Ewing sarcoma breakpoint region 1',
'ENSMUSG00000034175' => 'rhomboid domain containing 3'
),
'gene_name_arr' => array(
'ENSDARG00000020465' => 'ewsr1b',
'ENSDARG00000079816' => 'rhbdd3',
'ENSMUSG00000009079' => 'Ewsr1',
'ENSMUSG00000034175' => 'Rhbdd3'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 18 => 'Breast',
(int) 20 => 'Colon',
(int) 22 => 'Heart',
(int) 30 => 'Kidney',
(int) 38 => 'Liver',
(int) 45 => 'Lung',
(int) 47 => 'Muscle',
(int) 52 => 'Ovary',
(int) 56 => 'Placenta',
(int) 62 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 30,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENSDART00000003998' => array(
'start' => '26542495',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-001'
),
'ENSDART00000057248' => array(
'start' => '26542496',
'end' => '26551282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-201'
),
'ENSDART00000127773' => array(
'start' => '26542131',
'end' => '26551292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-002'
),
'ENSDART00000139998' => array(
'start' => '26546611',
'end' => '26549873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ewsr1b-005'
),
'ENSDART00000143851' => array(
'start' => '26544845',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-004'
),
'ENSDART00000146742' => array(
'start' => '26543218',
'end' => '26545005',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ewsr1b-003'
),
'ENSDART00000111302' => array(
'start' => '26551568',
'end' => '26555532',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rhbdd3-001'
),
'ENSMUST00000063232' => array(
'start' => '5090459',
'end' => '5099096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-010'
),
'ENSMUST00000073308' => array(
'start' => '5069698',
'end' => '5099067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-007'
),
'ENSMUST00000079949' => array(
'start' => '5069689',
'end' => '5099266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-002'
),
'ENSMUST00000093365' => array(
'start' => '5080418',
'end' => '5099066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-004'
),
'ENSMUST00000102930' => array(
'start' => '5069897',
'end' => '5099042',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-009'
),
'ENSMUST00000130060' => array(
'start' => '5070690',
'end' => '5072220',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-005'
),
'ENSMUST00000130118' => array(
'start' => '5069974',
'end' => '5070891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-003'
),
'ENSMUST00000139886' => array(
'start' => '5071520',
'end' => '5079899',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-013'
),
'ENSMUST00000141002' => array(
'start' => '5071107',
'end' => '5079528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-012'
),
'ENSMUST00000144238' => array(
'start' => '5082022',
'end' => '5086036',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-011'
),
'ENSMUST00000150168' => array(
'start' => '5071520',
'end' => '5082340',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-006'
),
'ENSMUST00000151497' => array(
'start' => '5071417',
'end' => '5078521',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-001'
),
'ENSMUST00000151847' => array(
'start' => '5093532',
'end' => '5099067',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-008'
),
'ENSMUST00000036320' => array(
'start' => '5099439',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-002'
),
'ENSMUST00000101610' => array(
'start' => '5098926',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-001'
),
'ENSMUST00000109878' => array(
'start' => '5100157',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-201'
),
'ENSMUST00000129016' => array(
'start' => '5100237',
'end' => '5106093',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-009'
),
'ENSMUST00000134267' => array(
'start' => '5099433',
'end' => '5103349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-005'
),
'ENSMUST00000137370' => array(
'start' => '5099077',
'end' => '5100587',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-008'
),
'ENSMUST00000139742' => array(
'start' => '5099608',
'end' => '5103260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-006'
),
'ENSMUST00000146879' => array(
'start' => '5099273',
'end' => '5100507',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-007'
),
'ENSMUST00000148761' => array(
'start' => '5100170',
'end' => '5105228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-004'
),
'ENSMUST00000150632' => array(
'start' => '5099476',
'end' => '5103254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-003'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
'ENSDARG00000020465' => array(
[maximum depth reached]
),
'ENSDARG00000079816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Brain',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$gene_desc_arr = array(
'ENSDARG00000020465' => 'Ewing sarcoma breakpoint region 1b',
'ENSDARG00000079816' => 'rhomboid domain containing 3',
'ENSMUSG00000009079' => 'Ewing sarcoma breakpoint region 1',
'ENSMUSG00000034175' => 'rhomboid domain containing 3'
)
$gene_name_arr = array(
'ENSDARG00000020465' => 'ewsr1b',
'ENSDARG00000079816' => 'rhbdd3',
'ENSMUSG00000009079' => 'Ewsr1',
'ENSMUSG00000034175' => 'Rhbdd3'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0001',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '26542131',
'seq_end' => '26555532',
'region_length' => '13401',
'region_type' => 'CGP',
'el_id' => 'ENSDARG00000020465-ENSDARG00000079816'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '5069689',
'seq_end' => '5106093',
'region_length' => '36404',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000009079-ENSMUSG00000034175'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 3 => 'Adrenal',
(int) 5 => 'Bladder',
(int) 7 => 'Brain',
(int) 18 => 'Breast',
(int) 20 => 'Colon',
(int) 22 => 'Heart',
(int) 30 => 'Kidney',
(int) 38 => 'Liver',
(int) 45 => 'Lung',
(int) 47 => 'Muscle',
(int) 52 => 'Ovary',
(int) 56 => 'Placenta',
(int) 62 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 30
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENSDART00000003998' => array(
'start' => '26542495',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-001'
),
'ENSDART00000057248' => array(
'start' => '26542496',
'end' => '26551282',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-201'
),
'ENSDART00000127773' => array(
'start' => '26542131',
'end' => '26551292',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-002'
),
'ENSDART00000139998' => array(
'start' => '26546611',
'end' => '26549873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'ewsr1b-005'
),
'ENSDART00000143851' => array(
'start' => '26544845',
'end' => '26551295',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'ewsr1b-004'
),
'ENSDART00000146742' => array(
'start' => '26543218',
'end' => '26545005',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'ewsr1b-003'
),
'ENSDART00000111302' => array(
'start' => '26551568',
'end' => '26555532',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'rhbdd3-001'
),
'ENSMUST00000063232' => array(
'start' => '5090459',
'end' => '5099096',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-010'
),
'ENSMUST00000073308' => array(
'start' => '5069698',
'end' => '5099067',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-007'
),
'ENSMUST00000079949' => array(
'start' => '5069689',
'end' => '5099266',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-002'
),
'ENSMUST00000093365' => array(
'start' => '5080418',
'end' => '5099066',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-004'
),
'ENSMUST00000102930' => array(
'start' => '5069897',
'end' => '5099042',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Ewsr1-009'
),
'ENSMUST00000130060' => array(
'start' => '5070690',
'end' => '5072220',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-005'
),
'ENSMUST00000130118' => array(
'start' => '5069974',
'end' => '5070891',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-003'
),
'ENSMUST00000139886' => array(
'start' => '5071520',
'end' => '5079899',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-013'
),
'ENSMUST00000141002' => array(
'start' => '5071107',
'end' => '5079528',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-012'
),
'ENSMUST00000144238' => array(
'start' => '5082022',
'end' => '5086036',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-011'
),
'ENSMUST00000150168' => array(
'start' => '5071520',
'end' => '5082340',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-006'
),
'ENSMUST00000151497' => array(
'start' => '5071417',
'end' => '5078521',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-001'
),
'ENSMUST00000151847' => array(
'start' => '5093532',
'end' => '5099067',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Ewsr1-008'
),
'ENSMUST00000036320' => array(
'start' => '5099439',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-002'
),
'ENSMUST00000101610' => array(
'start' => '5098926',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-001'
),
'ENSMUST00000109878' => array(
'start' => '5100157',
'end' => '5106091',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-201'
),
'ENSMUST00000129016' => array(
'start' => '5100237',
'end' => '5106093',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-009'
),
'ENSMUST00000134267' => array(
'start' => '5099433',
'end' => '5103349',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-005'
),
'ENSMUST00000137370' => array(
'start' => '5099077',
'end' => '5100587',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-008'
),
'ENSMUST00000139742' => array(
'start' => '5099608',
'end' => '5103260',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-006'
),
'ENSMUST00000146879' => array(
'start' => '5099273',
'end' => '5100507',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Rhbdd3-007'
),
'ENSMUST00000148761' => array(
'start' => '5100170',
'end' => '5105228',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-004'
),
'ENSMUST00000150632' => array(
'start' => '5099476',
'end' => '5103254',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Rhbdd3-003'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0003VR_0001' => array(
'genes_in_region' => array(
'ENSDARG00000020465' => array(
[maximum depth reached]
),
'ENSDARG00000079816' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Kidney',
(int) 3 => 'Liver',
(int) 4 => 'Muscle',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Liver',
(int) 13 => 'Brain',
(int) 14 => 'Brain',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Muscle'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0003VR_0002',
'tax_id' => '10090',
'chromosome' => '11',
'seq_start' => '5069689',
'seq_end' => '5106093',
'region_length' => '36404',
'region_type' => 'CGP',
'el_id' => 'ENSMUSG00000009079-ENSMUSG00000034175'
)
)
$gene_el = array(
'ENSDART00000111302' => array(
'Brain' => array(
'average_FPKM' => '3.914',
'stddev_FPKM' => '0.58'
),
'Heart' => array(
'average_FPKM' => '0.975',
'stddev_FPKM' => '0.52'
),
'Kidney' => array(
'average_FPKM' => '1.551',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.462',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSDARG00000079816'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '3.914',
'stddev_FPKM' => '0.58'
),
'Heart' => array(
'average_FPKM' => '0.975',
'stddev_FPKM' => '0.52'
),
'Kidney' => array(
'average_FPKM' => '1.551',
'stddev_FPKM' => '0.00'
),
'Liver' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.00'
),
'Muscle' => array(
'average_FPKM' => '0.462',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSDART00000111302'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(ewsr1b)