C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142166-ENSG00000159128 CGP 9606 21:33324477-33479348
GeneTranscriptPositionBiotype
ENSG00000142166 (IFNAR1)
interferon (alpha, beta and omega) receptor 1 		ENST00000270139 (IFNAR1-001) 33324904-33359862 protein_coding
ENST00000442071 (IFNAR1-003) 33324973-33345277 protein_coding
ENST00000493503 (IFNAR1-002) 33324477-33335611 processed_transcript
ENSG00000142188 (TMEM50B)
transmembrane protein 50B 		ENST00000420455 (TMEM50B-002) 33432485-33479943 nonsense_mediated_decay
ENST00000432504 (TMEM50B-005) 33465378-33479289 protein_coding
ENST00000441128 (TMEM50B-011) 33450521-33468926 nonsense_mediated_decay
ENST00000442441 (TMEM50B-004) 33450547-33479936 nonsense_mediated_decay
ENST00000459909 (TMEM50B-003) 33468420-33479948 retained_intron
ENST00000468874 (TMEM50B-008) 33436884-33449189 processed_transcript
ENST00000470682 (TMEM50B-007) 33432798-33449410 processed_transcript
ENST00000474272 (TMEM50B-006) 33465018-33467135 retained_intron
ENST00000484377 (TMEM50B-009) 33432485-33448964 processed_transcript
ENST00000542230 (TMEM50B-001) 33449135-33480011 protein_coding
ENSG00000159128 (IFNGR2)
interferon gamma receptor 2 (interferon gamma transducer 1) 		ENST00000290219 (IFNGR2-001) 33402896-33437521 protein_coding
ENST00000381995 (IFNGR2-002) 33403432-33437521 protein_coding
ENST00000405436 (IFNGR2-007) 33403466-33437502 protein_coding
ENST00000421802 (IFNGR2-005) 33432319-33479348 protein_coding
ENST00000439213 (IFNGR2-003) 33403427-33432216 nonsense_mediated_decay
ENST00000545369 (IFNGR2-004) 33403441-33436944 nonsense_mediated_decay
ENSG00000226501 (USF1P1)
upstream transcription factor 1 pseudogene 1 		ENST00000451645 (USF1P1-001) 33334571-33335096 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003WY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022967-ENSMUSG00000022965 CGP 10090 16:91485238-91565169
GeneTranscriptPositionBiotype
ENSMUSG00000022965 (Ifngr2)
interferon gamma receptor 2 		ENSMUST00000023687 (Ifngr2-001) 91547072-91565169 protein_coding
ENSMUST00000127644 (Ifngr2-003) 91547147-91560649 nonsense_mediated_decay
ENSMUST00000130404 (Ifngr2-002) 91561323-91565169 processed_transcript
ENSMUSG00000022967 (Ifnar1)
interferon (alpha and beta) receptor 1 		ENSMUST00000023689 (Ifnar1-001) 91485238-91507441 protein_coding
ENSMUST00000117748 (Ifnar1-004) 91485264-91507441 protein_coding
ENSMUST00000123196 (Ifnar1-003) 91485249-91507437 nonsense_mediated_decay
ENSMUST00000129878 (Ifnar1-005) 91485336-91496174 protein_coding
ENSMUST00000145008 (Ifnar1-002) 91485277-91491789 retained_intron
ENSMUSG00000082535 (Gm7860)
predicted gene 7860 		ENSMUST00000121190 (Gm7860-001) 91539182-91540060 processed_pseudogene
ENSMUSG00000084301 (Gm7856)
predicted gene 7856 		ENSMUST00000117514 (Gm7856-001) 91513141-91514633 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WY_0001ENSG00000142166ENST00000270139ENST00000442071ENST00000493503ENSG00000142188ENST00000420455ENST00000432504ENST00000441128ENST00000442441ENST00000459909ENST00000468874ENST00000470682ENST00000474272ENST00000484377ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000421802ENST00000439213ENST00000545369ENSG00000226501ENST00000451645CIL_0003WY_0002ENSMUSG00000022965ENSMUST00000023687ENSMUST00000127644ENSMUST00000130404ENSMUSG00000022967ENSMUST00000023689ENSMUST00000117748ENSMUST00000123196ENSMUST00000129878ENSMUST00000145008ENSMUSG00000082535ENSMUST00000121190ENSMUSG00000084301ENSMUST00000117514
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WY_0001ENSG00000142166ENST00000270139ENSG00000142188ENST00000420455ENST00000442441ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000545369ENSG00000226501ENST00000451645CIL_0003WY_0002ENSMUSG00000022965ENSMUST00000023687ENSMUST00000127644ENSMUST00000130404ENSMUSG00000022967ENSMUST00000023689ENSMUST00000117748ENSMUST00000123196ENSMUST00000129878ENSMUSG00000082535ENSMUST00000121190ENSMUSG00000084301ENSMUST00000117514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142166 ENST00000270139 14.932±0.00 7.160±0.00 3.708±0.00 4.870±1.79 7.614±2.86 6.946±3.67 3.111±1.96 7.299±0.12 8.418±2.84 8.318±2.39 1.693±0.75 5.331±0.89 9.506±1.96 5.238±2.08
ENST00000442071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000142188 ENST00000420455 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A N/A N/A 5.462±0.10 N/A N/A
ENST00000432504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.949±0.00 10.790±0.00 29.098±0.00
ENST00000459909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542230 14.217±0.00 9.603±0.00 3.256±0.00 8.324±0.54 10.058±2.65 9.865±4.82 6.884±3.99 15.150±13.05 7.018±1.11 8.823±5.49 6.670±3.86 13.218±4.35 7.830±2.45 12.886±5.79
ENSG00000159128 ENST00000290219 N/A N/A N/A N/A 5.424±0.00 N/A N/A 2.110±0.00 N/A N/A N/A 13.480±0.00 12.901±0.00 N/A
ENST00000381995 N/A N/A N/A 6.756±0.00 N/A N/A 2.960±0.00 N/A N/A N/A 4.502±0.00 N/A N/A N/A
ENST00000405436 47.039±0.00 45.391±0.00 2.362±0.00 20.244±0.00 26.669±0.00 30.156±0.00 13.514±0.00 35.555±0.00 12.967±7.02 29.085±23.38 5.870±0.00 31.308±18.30 51.781±10.83 26.231±4.07
ENST00000421802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545369 N/A N/A 8.855±0.00 12.613±0.00 19.708±0.00 19.208±0.00 2.607±0.00 6.999±0.00 8.581±0.00 8.604±0.00 10.406±0.00 29.781±0.00 23.793±0.00 N/A
ENSG00000226501 ENST00000451645 N/A 0.069±0.00 N/A 0.078±0.00 N/A N/A 0.293±0.00 N/A 0.031±0.00 0.831±0.00 0.061±0.00 0.093±0.00 N/A 0.064±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022965 ENSMUST00000023687 15.541±2.73 34.307±10.45 12.286±0.63 8.273±3.32 29.928±9.09 74.311±8.90 41.435±6.66 8.817±1.38 4.823±1.63 26.999±5.64 5.954±3.75 32.613±13.31 3.287±1.24 3.450±1.26
ENSMUST00000127644 N/A N/A N/A 16.914±0.00 N/A N/A N/A N/A N/A N/A N/A 26.247±3.57 7.858±0.70 N/A
ENSMUST00000130404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.431±0.88
ENSMUSG00000022967 ENSMUST00000023689 12.885±3.91 4.826±1.89 11.516±1.41 12.229±7.06 10.262±4.26 5.615±1.49 3.823±1.35 9.025±2.47 7.809±2.58 14.009±1.39 2.394±0.65 8.602±4.12 17.003±7.52 2.574±1.09
ENSMUST00000117748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.839±0.00 3.578±1.11 N/A
ENSMUST00000123196 2.802±0.26 1.463±0.28 2.223±0.00 N/A 3.781±0.55 1.772±0.41 1.164±0.13 1.802±0.09 1.874±0.48 5.105±0.00 1.053±0.00 5.328±1.74 4.061±0.92 0.674±0.17
ENSMUST00000129878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.639±0.00
ENSMUST00000145008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082535 ENSMUST00000121190 0.215±0.17 0.110±0.07 0.628±0.51 0.143±0.13 0.761±0.56 0.248±0.07 0.262±0.09 0.162±0.08 0.332±0.40 0.171±0.04 0.099±0.00 0.212±0.19 0.075±0.05 0.060±0.04
ENSMUSG00000084301 ENSMUST00000117514 0.063±0.03 N/A 0.010±0.00 0.018±0.00 0.123±0.00 0.114±0.05 N/A 0.021±0.00 0.072±0.06 0.032±0.00 N/A 0.104±0.03 N/A 0.201±0.14

Loading