C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003WY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000142166-ENSG00000159128 CGP 9606 21:33324477-33479348
GeneTranscriptPositionBiotype
ENSG00000142166 (IFNAR1)
interferon (alpha, beta and omega) receptor 1 		ENST00000270139 (IFNAR1-001) 33324904-33359862 protein_coding
ENST00000442071 (IFNAR1-003) 33324973-33345277 protein_coding
ENST00000493503 (IFNAR1-002) 33324477-33335611 processed_transcript
ENSG00000142188 (TMEM50B)
transmembrane protein 50B 		ENST00000420455 (TMEM50B-002) 33432485-33479943 nonsense_mediated_decay
ENST00000432504 (TMEM50B-005) 33465378-33479289 protein_coding
ENST00000441128 (TMEM50B-011) 33450521-33468926 nonsense_mediated_decay
ENST00000442441 (TMEM50B-004) 33450547-33479936 nonsense_mediated_decay
ENST00000459909 (TMEM50B-003) 33468420-33479948 retained_intron
ENST00000468874 (TMEM50B-008) 33436884-33449189 processed_transcript
ENST00000470682 (TMEM50B-007) 33432798-33449410 processed_transcript
ENST00000474272 (TMEM50B-006) 33465018-33467135 retained_intron
ENST00000484377 (TMEM50B-009) 33432485-33448964 processed_transcript
ENST00000542230 (TMEM50B-001) 33449135-33480011 protein_coding
ENSG00000159128 (IFNGR2)
interferon gamma receptor 2 (interferon gamma transducer 1) 		ENST00000290219 (IFNGR2-001) 33402896-33437521 protein_coding
ENST00000381995 (IFNGR2-002) 33403432-33437521 protein_coding
ENST00000405436 (IFNGR2-007) 33403466-33437502 protein_coding
ENST00000421802 (IFNGR2-005) 33432319-33479348 protein_coding
ENST00000439213 (IFNGR2-003) 33403427-33432216 nonsense_mediated_decay
ENST00000545369 (IFNGR2-004) 33403441-33436944 nonsense_mediated_decay
ENSG00000226501 (USF1P1)
upstream transcription factor 1 pseudogene 1 		ENST00000451645 (USF1P1-001) 33334571-33335096 processed_pseudogene
CIL_0003WY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022967-ENSMUSG00000022965 CGP 10090 16:91485238-91565169
GeneTranscriptPositionBiotype
ENSMUSG00000022965 (Ifngr2)
interferon gamma receptor 2 		ENSMUST00000023687 (Ifngr2-001) 91547072-91565169 protein_coding
ENSMUST00000127644 (Ifngr2-003) 91547147-91560649 nonsense_mediated_decay
ENSMUST00000130404 (Ifngr2-002) 91561323-91565169 processed_transcript
ENSMUSG00000022967 (Ifnar1)
interferon (alpha and beta) receptor 1 		ENSMUST00000023689 (Ifnar1-001) 91485238-91507441 protein_coding
ENSMUST00000117748 (Ifnar1-004) 91485264-91507441 protein_coding
ENSMUST00000123196 (Ifnar1-003) 91485249-91507437 nonsense_mediated_decay
ENSMUST00000129878 (Ifnar1-005) 91485336-91496174 protein_coding
ENSMUST00000145008 (Ifnar1-002) 91485277-91491789 retained_intron
ENSMUSG00000082535 (Gm7860)
predicted gene 7860 		ENSMUST00000121190 (Gm7860-001) 91539182-91540060 processed_pseudogene
ENSMUSG00000084301 (Gm7856)
predicted gene 7856 		ENSMUST00000117514 (Gm7856-001) 91513141-91514633 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WY_0001ENSG00000142166ENST00000270139ENST00000442071ENST00000493503ENSG00000142188ENST00000420455ENST00000432504ENST00000441128ENST00000442441ENST00000459909ENST00000468874ENST00000470682ENST00000474272ENST00000484377ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000421802ENST00000439213ENST00000545369ENSG00000226501ENST00000451645CIL_0003WY_0002ENSMUSG00000022965ENSMUST00000023687ENSMUST00000127644ENSMUST00000130404ENSMUSG00000022967ENSMUST00000023689ENSMUST00000117748ENSMUST00000123196ENSMUST00000129878ENSMUST00000145008ENSMUSG00000082535ENSMUST00000121190ENSMUSG00000084301ENSMUST00000117514
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003WY_0001ENSG00000142166ENST00000270139ENSG00000142188ENST00000420455ENST00000442441ENST00000542230ENSG00000159128ENST00000290219ENST00000381995ENST00000405436ENST00000545369ENSG00000226501ENST00000451645CIL_0003WY_0002ENSMUSG00000022965ENSMUST00000023687ENSMUST00000127644ENSMUST00000130404ENSMUSG00000022967ENSMUST00000023689ENSMUST00000117748ENSMUST00000123196ENSMUST00000129878ENSMUSG00000082535ENSMUST00000121190ENSMUSG00000084301ENSMUST00000117514
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142166 ENST00000270139 14.932±0.00 7.160±0.00 3.708±0.00 4.870±1.79 7.614±2.86 6.946±3.67 3.111±1.96 7.299±0.12 8.418±2.84 8.318±2.39 1.693±0.75 5.331±0.89 9.506±1.96 5.238±2.08
ENST00000442071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000142188 ENST00000420455 N/A N/A N/A N/A N/A N/A N/A 1.329±0.00 N/A N/A N/A 5.462±0.10 N/A N/A
ENST00000432504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.949±0.00 10.790±0.00 29.098±0.00
ENST00000459909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542230 14.217±0.00 9.603±0.00 3.256±0.00 8.324±0.54 10.058±2.65 9.865±4.82 6.884±3.99 15.150±13.05 7.018±1.11 8.823±5.49 6.670±3.86 13.218±4.35 7.830±2.45 12.886±5.79
ENSG00000159128 ENST00000290219 N/A N/A N/A N/A 5.424±0.00 N/A N/A 2.110±0.00 N/A N/A N/A 13.480±0.00 12.901±0.00 N/A
ENST00000381995 N/A N/A N/A 6.756±0.00 N/A N/A 2.960±0.00 N/A N/A N/A 4.502±0.00 N/A N/A N/A
ENST00000405436 47.039±0.00 45.391±0.00 2.362±0.00 20.244±0.00 26.669±0.00 30.156±0.00 13.514±0.00 35.555±0.00 12.967±7.02 29.085±23.38 5.870±0.00 31.308±18.30 51.781±10.83 26.231±4.07
ENST00000421802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545369 N/A N/A 8.855±0.00 12.613±0.00 19.708±0.00 19.208±0.00 2.607±0.00 6.999±0.00 8.581±0.00 8.604±0.00 10.406±0.00 29.781±0.00 23.793±0.00 N/A
ENSG00000226501 ENST00000451645 N/A 0.069±0.00 N/A 0.078±0.00 N/A N/A 0.293±0.00 N/A 0.031±0.00 0.831±0.00 0.061±0.00 0.093±0.00 N/A 0.064±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022965 ENSMUST00000023687 15.541±2.73 34.307±10.45 12.286±0.63 8.273±3.32 29.928±9.09 74.311±8.90 41.435±6.66 8.817±1.38 4.823±1.63 26.999±5.64 5.954±3.75 32.613±13.31 3.287±1.24 3.450±1.26
ENSMUST00000127644 N/A N/A N/A 16.914±0.00 N/A N/A N/A N/A N/A N/A N/A 26.247±3.57 7.858±0.70 N/A
ENSMUST00000130404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.431±0.88
ENSMUSG00000022967 ENSMUST00000023689 12.885±3.91 4.826±1.89 11.516±1.41 12.229±7.06 10.262±4.26 5.615±1.49 3.823±1.35 9.025±2.47 7.809±2.58 14.009±1.39 2.394±0.65 8.602±4.12 17.003±7.52 2.574±1.09
ENSMUST00000117748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.839±0.00 3.578±1.11 N/A
ENSMUST00000123196 2.802±0.26 1.463±0.28 2.223±0.00 N/A 3.781±0.55 1.772±0.41 1.164±0.13 1.802±0.09 1.874±0.48 5.105±0.00 1.053±0.00 5.328±1.74 4.061±0.92 0.674±0.17
ENSMUST00000129878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.639±0.00
ENSMUST00000145008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082535 ENSMUST00000121190 0.215±0.17 0.110±0.07 0.628±0.51 0.143±0.13 0.761±0.56 0.248±0.07 0.262±0.09 0.162±0.08 0.332±0.40 0.171±0.04 0.099±0.00 0.212±0.19 0.075±0.05 0.060±0.04
ENSMUSG00000084301 ENSMUST00000117514 0.063±0.03 N/A 0.010±0.00 0.018±0.00 0.123±0.00 0.114±0.05 N/A 0.021±0.00 0.072±0.06 0.032±0.00 N/A 0.104±0.03 N/A 0.201±0.14

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