C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003XA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074386-ENSDARG00000067692 CGP 7955 12:42115508-42837810
GeneTranscriptPositionBiotype
ENSDARG00000067692 (CDH18 (2 of 2))
cadherin 18, type 2 		ENSDART00000097498 (CDH18 (2 of 2)-201) 42684913-42837810 protein_coding
ENSDARG00000074386 (CDH12 (1 of 2))
cadherin 12, type 2 (N-cadherin 2) 		ENSDART00000087449 (CDH12 (1 of 2)-201) 42115508-42244621 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003XA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078226-ENSDARG00000061371 CGP 7955 2:28710608-29067510
GeneTranscriptPositionBiotype
ENSDARG00000061371 (cdh18)
cadherin 18, type 2 		ENSDART00000025562 (cdh18-002) 28972807-29067510 protein_coding
ENSDART00000099157 (cdh18-001) 28964393-28974091 protein_coding
ENSDARG00000078226 (CDH12 (2 of 2))
cadherin 12, type 2 (N-cadherin 2) 		ENSDART00000087446 (CDH12 (2 of 2)-201) 28727595-28831724 protein_coding
ENSDART00000138733 (CDH12 (2 of 2)-001) 28710608-28831724 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003XA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000040452-ENSMUSG00000040420 CGP 10090 15:21111452-23474418
GeneTranscriptPositionBiotype
ENSMUSG00000021927 (Gm5803)
predicted gene 5803 		ENSMUST00000022493 (Gm5803-001) 22713868-22714830 processed_pseudogene
ENSMUSG00000040420 (Cdh18)
cadherin 18 		ENSMUST00000040427 (Cdh18-003) 23036463-23446414 retained_intron
ENSMUST00000163361 (Cdh18-006) 22549022-23400567 protein_coding
ENSMUST00000164787 (Cdh18-001) 23036463-23474418 protein_coding
ENSMUST00000165614 (Cdh18-004) 23173702-23474065 protein_coding
ENSMUST00000167623 (Cdh18-005) 23173864-23474029 protein_coding
ENSMUST00000170626 (Cdh18-002) 23036455-23175141 retained_intron
ENSMUSG00000040452 (Cdh12)
cadherin 12 		ENSMUST00000075132 (Cdh12-001) 21111452-21589533 protein_coding
ENSMUSG00000091194 (Gm19840)
predicted gene, 19840 		ENSMUST00000169624 (Gm19840-001) 22935487-22937241 processed_pseudogene
ENSMUSG00000094031 (Gm24656)
predicted gene, 24656 		ENSMUST00000177548 (Gm24656-201) 23154734-23154865 snoRNA
ENSMUSG00000095678 (Gm25101)
predicted gene, 25101 		ENSMUST00000179057 (Gm25101-201) 21114369-21114475 snRNA
ENSMUSG00000098700 (Gm27525)
predicted gene, 27525 		ENSMUST00000184465 (Gm27525-201) 22274070-22274176 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XA_0001ENSDARG00000067692ENSDART00000097498ENSDARG00000074386ENSDART00000087449CIL_0003XA_0002ENSDARG00000061371ENSDART00000025562ENSDART00000099157ENSDARG00000078226ENSDART00000087446ENSDART00000138733CIL_0003XA_0003ENSMUSG00000021927ENSMUST00000022493ENSMUSG00000040420ENSMUST00000040427ENSMUST00000163361ENSMUST00000164787ENSMUST00000165614ENSMUST00000167623ENSMUST00000170626ENSMUSG00000040452ENSMUST00000075132ENSMUSG00000091194ENSMUST00000169624ENSMUSG00000094031ENSMUST00000177548ENSMUSG00000095678ENSMUST00000179057ENSMUSG00000098700ENSMUST00000184465
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003XA_0001ENSDARG00000067692ENSDART00000097498ENSDARG00000074386ENSDART00000087449CIL_0003XA_0002ENSDARG00000061371ENSDART00000025562ENSDART00000099157ENSDARG00000078226ENSDART00000087446ENSDART00000138733CIL_0003XA_0003ENSMUSG00000021927ENSMUST00000022493ENSMUSG00000040420ENSMUST00000040427ENSMUST00000163361ENSMUST00000164787ENSMUST00000165614ENSMUST00000167623ENSMUST00000170626ENSMUSG00000040452ENSMUST00000075132ENSMUSG00000091194ENSMUST00000169624ENSMUSG00000094031ENSMUST00000177548ENSMUSG00000095678ENSMUST00000179057ENSMUSG00000098700ENSMUST00000184465
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000067692 ENSDART00000097498 N/A N/A N/A 3.086±2.89 N/A N/A 0.099±0.01 0.478±0.00 0.018±0.00 N/A 0.333±0.00 N/A N/A N/A
ENSDARG00000074386 ENSDART00000087449 N/A N/A N/A 1.352±0.91 N/A N/A 0.022±0.00 0.027±0.00 N/A N/A 0.220±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061371 ENSDART00000025562 N/A N/A N/A 3.029±2.25 N/A N/A 0.079±0.00 0.530±0.00 0.028±0.00 N/A N/A N/A N/A N/A
ENSDART00000099157 N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000078226 ENSDART00000087446 N/A N/A N/A 0.140±0.00 N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000138733 N/A N/A N/A 2.430±0.00 N/A N/A N/A 0.091±0.00 N/A N/A 0.041±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021927 ENSMUST00000022493 0.109±0.06 N/A 0.083±0.00 0.576±0.43 N/A 0.146±0.00 N/A N/A 0.238±0.32 N/A 0.046±0.01 0.222±0.00 0.133±0.12 N/A
ENSMUSG00000040420 ENSMUST00000040427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A
ENSMUST00000163361 0.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164787 N/A 0.157±0.06 0.387±0.13 2.104±1.16 0.053±0.03 0.058±0.03 0.022±0.01 N/A 0.059±0.05 0.021±0.00 N/A 0.066±0.01 0.013±0.01 0.687±0.33
ENSMUST00000165614 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.01 N/A N/A N/A 0.018±0.01 N/A
ENSMUST00000167623 0.064±0.00 N/A N/A N/A 0.077±0.00 N/A N/A N/A 0.030±0.03 N/A N/A 0.039±0.00 0.021±0.01 0.257±0.00
ENSMUST00000170626 N/A 0.100±0.01 N/A N/A 0.192±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000040452 ENSMUST00000075132 0.022±0.01 N/A 0.007±0.00 0.834±0.43 N/A 0.050±0.00 N/A N/A 0.005±0.00 0.022±0.00 0.005±0.00 0.084±0.05 0.003±0.00 0.376±0.19
ENSMUSG00000091194 ENSMUST00000169624 0.065±0.01 N/A 0.030±0.02 0.154±0.14 0.256±0.00 N/A N/A 0.054±0.00 0.008±0.00 N/A N/A 0.069±0.00 0.044±0.05 N/A
ENSMUSG00000094031 ENSMUST00000177548 N/A N/A N/A 19.692±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000095678 ENSMUST00000179057 N/A N/A 8.675±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098700 ENSMUST00000184465 N/A N/A N/A N/A N/A 2442.090±374.67 N/A 1836.790±0.00 N/A N/A N/A N/A N/A 1762.500±0.00

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