C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000012048-ENSG00000188554 CGP 9606 17:43044295-43211689
GeneTranscriptPositionBiotype
ENSG00000012048 (BRCA1)
breast cancer 1, early onset 		ENST00000352993 (BRCA1-029) 43044295-43125370 protein_coding
ENST00000354071 (BRCA1-012) 43091098-43125315 protein_coding
ENST00000357654 (BRCA1-001) 43044295-43125370 protein_coding
ENST00000412061 (BRCA1-026) 43093570-43095866 non_stop_decay
ENST00000461221 (BRCA1-010) 43045678-43125288 nonsense_mediated_decay
ENST00000461574 (BRCA1-022) 43076537-43091824 protein_coding
ENST00000461798 (BRCA1-020) 43099831-43125370 nonsense_mediated_decay
ENST00000468300 (BRCA1-007) 43044805-43125451 protein_coding
ENST00000470026 (BRCA1-011) 43093584-43125323 protein_coding
ENST00000471181 (BRCA1-005) 43045629-43125483 protein_coding
ENST00000472490 (BRCA1-021) 43067274-43071066 retained_intron
ENST00000473961 (BRCA1-018) 43094170-43104891 protein_coding
ENST00000476777 (BRCA1-017) 43095846-43125353 protein_coding
ENST00000477152 (BRCA1-004) 43093586-43125364 protein_coding
ENST00000478531 (BRCA1-009) 43063344-43125359 protein_coding
ENST00000484087 (BRCA1-015) 43063344-43104916 protein_coding
ENST00000487825 (BRCA1-019) 43076488-43104916 protein_coding
ENST00000489037 (BRCA1-016) 43104189-43125321 protein_coding
ENST00000491747 (BRCA1-014) 43045678-43125356 protein_coding
ENST00000492859 (BRCA1-002) 43094112-43125300 nonsense_mediated_decay
ENST00000493795 (BRCA1-006) 43045629-43125402 protein_coding
ENST00000493919 (BRCA1-008) 43063360-43125402 protein_coding
ENST00000494123 (BRCA1-013) 43094112-43125450 protein_coding
ENST00000497488 (BRCA1-003) 43094112-43125300 protein_coding
ENST00000586385 (BRCA1-023) 43045563-43125329 protein_coding
ENST00000591534 (BRCA1-024) 43045563-43125329 protein_coding
ENST00000591849 (BRCA1-025) 43045563-43125329 protein_coding
ENST00000618469 (BRCA1-027) 43124026-43125364 protein_coding
ENST00000621897 (BRCA1-028) 43076488-43082760 processed_transcript
ENSG00000188554 (NBR1)
neighbor of BRCA1 gene 1 		ENST00000341165 (NBR1-001) 43170481-43211689 protein_coding
ENST00000422280 (NBR1-201) 43170494-43211687 protein_coding
ENST00000542611 (NBR1-002) 43171202-43209993 protein_coding
ENST00000585505 (NBR1-005) 43189914-43196120 retained_intron
ENST00000586650 (NBR1-007) 43170494-43177960 protein_coding
ENST00000589872 (NBR1-004) 43171243-43209857 protein_coding
ENST00000590996 (NBR1-003) 43171214-43210521 protein_coding
ENST00000592304 (NBR1-006) 43171225-43176676 retained_intron
ENST00000617399 (NBR1-202) 43177936-43177998 misc_RNA
ENSG00000198496 (NBR2)
neighbor of BRCA1 gene 2 (non-protein coding) 		ENST00000356906 (NBR2-003) 43125640-43140333 processed_transcript
ENST00000460115 (NBR2-001) 43125610-43145113 processed_transcript
ENST00000467245 (NBR2-004) 43125644-43153671 processed_transcript
ENST00000587322 (NBR2-005) 43131208-43131270 transcribed_unprocessed_pseudogene
ENSG00000267002 (RP11-242D8.1)
 ENST00000590740 (RP11-242D8.1-001) 43164183-43170403 lincRNA
ENSG00000267340 (RP11-242D8.3)
 ENST00000589047 (RP11-242D8.3-001) 43169880-43170077 processed_pseudogene
ENSG00000267595 (RP11-242D8.2)
 ENST00000589464 (RP11-242D8.2-001) 43168170-43168249 unprocessed_pseudogene
ENSG00000267681 (CTD-3199J23.6)
 ENST00000464237 (CTD-3199J23.6-001) 43144956-43145255 transcribed_processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00040M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000017146-ENSMUSG00000017119 CGP 10090 11:101488764-101581951
GeneTranscriptPositionBiotype
ENSMUSG00000017119 (Nbr1)
neighbor of Brca1 gene 1 		ENSMUST00000071537 (Nbr1-201) 101556172-101581012 protein_coding
ENSMUST00000103098 (Nbr1-002) 101552654-101581951 protein_coding
ENSMUST00000103099 (Nbr1-001) 101552149-101581951 protein_coding
ENSMUST00000107208 (Nbr1-005) 101552858-101581951 protein_coding
ENSMUST00000107212 (Nbr1-015) 101552882-101581951 protein_coding
ENSMUST00000107213 (Nbr1-003) 101552858-101581951 protein_coding
ENSMUST00000107218 (Nbr1-202) 101556058-101581012 protein_coding
ENSMUST00000123558 (Nbr1-004) 101552858-101581951 nonsense_mediated_decay
ENSMUST00000127421 (Nbr1-016) 101552901-101559545 protein_coding
ENSMUST00000127871 (Nbr1-009) 101566033-101568446 retained_intron
ENSMUST00000136185 (Nbr1-007) 101555866-101559562 nonsense_mediated_decay
ENSMUST00000141170 (Nbr1-013) 101577824-101580788 retained_intron
ENSMUST00000144517 (Nbr1-011) 101568687-101569412 processed_transcript
ENSMUST00000146452 (Nbr1-008) 101561786-101565781 retained_intron
ENSMUST00000147239 (Nbr1-014) 101552234-101559546 protein_coding
ENSMUST00000148805 (Nbr1-012) 101575107-101576631 retained_intron
ENSMUST00000149019 (Nbr1-006) 101567119-101581951 protein_coding
ENSMUST00000149170 (Nbr1-010) 101552867-101568540 processed_transcript
ENSMUST00000172744 (Nbr1-018) 101572227-101575216 retained_intron
ENSMUST00000174013 (Nbr1-017) 101568294-101569403 retained_intron
ENSMUSG00000017146 (Brca1)
breast cancer 1 		ENSMUST00000017290 (Brca1-001) 101488764-101551879 protein_coding
ENSMUST00000131460 (Brca1-004) 101512511-101522459 retained_intron
ENSMUST00000142086 (Brca1-002) 101525507-101551955 nonsense_mediated_decay
ENSMUST00000156843 (Brca1-003) 101496315-101508178 retained_intron
ENSMUST00000188168 (Brca1-006) 101524207-101525206 processed_transcript
ENSMUST00000190862 (Brca1-005) 101532083-101551582 protein_coding
ENSMUST00000191198 (Brca1-007) 101524193-101524858 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040M_0001ENSG00000012048ENST00000352993ENST00000354071ENST00000357654ENST00000412061ENST00000461221ENST00000461574ENST00000468300ENST00000471181ENST00000472490ENST00000476777ENST00000484087ENST00000493919ENST00000591534ENST00000618469ENSG00000188554ENST00000341165ENST00000422280ENST00000589872ENST00000590996ENSG00000198496ENST00000356906ENST00000460115ENST00000467245ENSG00000267002ENST00000590740ENSG00000267340ENST00000589047ENSG00000267595ENST00000589464ENSG00000267681ENST00000464237CIL_00040M_0002ENSMUSG00000017119ENSMUST00000071537ENSMUST00000103099ENSMUST00000107208ENSMUST00000107212ENSMUST00000107213ENSMUST00000107218ENSMUST00000123558ENSMUST00000148805ENSMUST00000149019ENSMUST00000149170ENSMUSG00000017146ENSMUST00000017290ENSMUST00000131460ENSMUST00000142086ENSMUST00000156843ENSMUST00000188168ENSMUST00000191198
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000012048 ENST00000352993 N/A 0.383±0.00 N/A N/A N/A 0.344±0.00 N/A 0.147±0.00 N/A N/A N/A 0.268±0.00 0.631±0.48 2.872±1.77
ENST00000354071 N/A N/A N/A 0.181±0.00 0.477±0.00 0.636±0.00 N/A 0.260±0.00 N/A 0.341±0.00 0.024±0.00 1.370±0.98 N/A N/A
ENST00000357654 N/A 0.090±0.00 N/A N/A N/A N/A 0.202±0.01 0.065±0.00 N/A 0.260±0.11 0.210±0.00 2.104±0.83 0.854±0.00 3.392±0.00
ENST00000412061 N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000461221 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.177±0.00 N/A 9.858±0.00
ENST00000461798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468300 N/A N/A N/A N/A N/A N/A 0.389±0.00 N/A N/A 0.288±0.00 N/A N/A N/A N/A
ENST00000470026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.637±0.00 N/A N/A
ENST00000472490 N/A 1.517±0.00 N/A N/A N/A N/A N/A 1.024±0.00 N/A N/A 0.958±0.00 N/A N/A N/A
ENST00000473961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476777 N/A N/A N/A 0.958±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484087 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493795 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493919 N/A N/A N/A N/A 0.677±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591534 N/A N/A N/A N/A N/A N/A N/A 0.576±0.00 N/A N/A N/A 0.785±0.00 N/A N/A
ENST00000591849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618469 N/A 1.111±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621897 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188554 ENST00000341165 N/A 12.293±0.00 3.768±0.00 N/A 11.391±4.48 N/A N/A N/A 9.693±0.10 11.645±5.61 3.004±0.00 17.449±7.87 N/A N/A
ENST00000422280 N/A N/A 3.870±0.00 1.460±0.00 N/A N/A N/A 1.827±0.00 N/A 1.352±0.00 2.046±0.00 2.835±0.00 N/A 18.204±0.00
ENST00000542611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.167±0.00
ENST00000590996 N/A N/A 4.126±0.00 N/A 5.026±0.00 4.056±0.00 2.761±0.00 N/A 5.632±0.00 4.233±0.00 3.750±0.00 12.314±0.00 4.861±0.00 N/A
ENST00000592304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198496 ENST00000356906 0.636±0.00 2.259±0.00 N/A 0.179±0.00 N/A 1.316±0.00 N/A 1.197±0.00 0.261±0.00 0.490±0.00 N/A 4.038±2.45 0.645±0.00 3.471±1.21
ENST00000460115 N/A N/A 0.549±0.00 0.497±0.35 0.907±0.35 0.676±0.00 0.206±0.08 1.971±0.00 1.150±0.92 0.650±0.00 N/A 2.383±0.66 0.310±0.00 N/A
ENST00000467245 N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A N/A N/A N/A 0.752±0.00 0.135±0.00 N/A
ENST00000587322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267002 ENST00000590740 0.347±0.00 1.389±0.00 N/A 1.460±0.38 0.445±0.29 0.827±0.00 0.947±0.00 0.731±0.58 0.134±0.00 0.816±0.05 0.336±0.03 2.550±1.33 0.499±0.19 2.374±0.90
ENSG00000267340 ENST00000589047 0.420±0.00 0.330±0.00 25.070±0.00 0.363±0.00 N/A 1.640±1.41 0.619±0.00 0.532±0.45 2.499±2.22 5.074±4.20 1.235±0.00 0.726±0.42 0.396±0.00 0.923±0.08
ENSG00000267595 ENST00000589464 1.261±0.00 N/A N/A N/A 0.302±0.00 N/A N/A N/A N/A N/A 1.132±0.00 N/A N/A N/A
ENSG00000267681 ENST00000464237 N/A N/A N/A N/A 2.120±0.00 N/A N/A N/A 2.746±0.00 N/A 5.794±0.00 2.761±0.00 0.490±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017119 ENSMUST00000071537 17.437±1.22 15.061±3.43 N/A N/A 16.442±0.65 13.582±4.27 9.032±3.52 24.467±3.84 17.398±4.39 12.111±2.70 N/A 20.614±4.58 N/A 33.632±0.00
ENSMUST00000103098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000103099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.264±0.00
ENSMUST00000107208 N/A N/A N/A 5.153±0.58 N/A N/A N/A N/A 5.628±1.60 N/A N/A 11.071±3.77 7.978±1.57 N/A
ENSMUST00000107212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.644±0.75 5.942±0.00 N/A
ENSMUST00000107213 8.027±0.91 N/A 18.357±0.70 17.369±2.75 4.079±0.60 5.971±1.12 6.133±1.61 12.226±1.25 9.396±2.65 8.500±2.11 5.820±0.35 11.857±5.76 20.795±4.47 18.223±2.64
ENSMUST00000107218 N/A N/A N/A 12.943±3.48 N/A N/A 6.773±1.41 N/A 5.298±1.10 N/A N/A 5.691±0.00 15.028±0.00 35.769±10.77
ENSMUST00000123558 N/A N/A 5.709±0.69 N/A N/A N/A N/A N/A N/A N/A 8.928±1.38 6.279±1.33 N/A N/A
ENSMUST00000127421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148805 N/A 20.643±3.65 N/A N/A 22.570±2.99 31.122±6.88 N/A N/A 24.512±2.40 19.151±0.46 N/A 31.909±5.03 N/A N/A
ENSMUST00000149019 N/A N/A 7.724±0.60 10.495±0.00 N/A N/A 4.069±0.00 6.006±0.00 6.551±1.04 N/A 5.197±0.72 12.926±1.79 11.885±3.63 N/A
ENSMUST00000149170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 798.506±0.00
ENSMUST00000172744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174013 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000017146 ENSMUST00000017290 0.242±0.00 0.123±0.05 0.199±0.01 1.063±0.19 0.132±0.07 N/A 0.021±0.01 0.054±0.02 3.120±2.75 0.117±0.02 0.027±0.02 1.634±0.99 4.167±2.73 2.236±0.61
ENSMUST00000131460 N/A 0.135±0.00 N/A N/A N/A N/A N/A 0.205±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000142086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.01 N/A N/A N/A
ENSMUST00000156843 N/A 0.051±0.00 N/A N/A N/A 0.497±0.00 N/A 0.052±0.00 0.048±0.00 N/A 0.024±0.00 N/A N/A N/A
ENSMUST00000188168 N/A 0.343±0.00 N/A N/A 0.254±0.05 N/A 0.095±0.01 N/A 0.107±0.00 N/A 0.047±0.00 1.902±0.34 N/A N/A
ENSMUST00000190862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A

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