C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00040Z_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189056-ENSG00000164815 CGP 9606 7:103471784-104208047
GeneTranscriptPositionBiotype
ENSG00000164815 (ORC5)
origin recognition complex, subunit 5 		ENST00000297431 (ORC5-001) 104126341-104208047 protein_coding
ENST00000422497 (ORC5-002) 104126343-104208000 nonsense_mediated_decay
ENST00000447452 (ORC5-006) 104167994-104207957 protein_coding
ENST00000448563 (ORC5-003) 104200821-104208000 nonsense_mediated_decay
ENST00000463152 (ORC5-005) 104184220-104197767 processed_transcript
ENST00000477223 (ORC5-007) 104126838-104165734 retained_intron
ENST00000485726 (ORC5-004) 104187543-104208009 processed_transcript
ENSG00000189056 (RELN)
reelin 		ENST00000343529 (RELN-002) 103471784-103989516 protein_coding
ENST00000424685 (RELN-201) 103471784-103989516 protein_coding
ENST00000428762 (RELN-001) 103471784-103989516 protein_coding
ENST00000429186 (RELN-009) 103472230-103482948 protein_coding
ENST00000473457 (RELN-006) 103627909-103630136 processed_transcript
ENST00000473945 (RELN-008) 103481941-103486257 processed_transcript
ENST00000478148 (RELN-007) 103523500-103539488 retained_intron
ENSG00000222386 (RN7SKP86)
RNA, 7SK small nuclear pseudogene 86 		ENST00000410454 (RN7SKP86-201) 103484208-103484539 misc_RNA
ENSG00000234715 (CTB-107G13.1)
 ENST00000422488 (CTB-107G13.1-001) 103445207-103514007 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00040Z_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042453-ENSMUSG00000029012 CGP 10090 5:21884454-22550429
GeneTranscriptPositionBiotype
ENSMUSG00000029012 (Orc5)
origin recognition complex, subunit 5 		ENSMUST00000030872 (Orc5-001) 22486489-22550375 protein_coding
ENSMUST00000051985 (Orc5-004) 22528343-22529244 processed_transcript
ENSMUST00000135906 (Orc5-002) 22486485-22550304 retained_intron
ENSMUST00000138248 (Orc5-005) 22546398-22550429 processed_transcript
ENSMUST00000141263 (Orc5-003) 22523516-22549518 protein_coding
ENSMUST00000142987 (Orc5-006) 22523551-22550375 processed_transcript
ENSMUSG00000042453 (Reln)
reelin 		ENSMUST00000062372 (Reln-002) 21885250-22344690 protein_coding
ENSMUST00000159741 (Reln-012) 22047524-22048753 retained_intron
ENSMUST00000159768 (Reln-009) 21898724-21932719 retained_intron
ENSMUST00000160707 (Reln-006) 22224874-22344690 retained_intron
ENSMUST00000160791 (Reln-013) 21884895-21896068 processed_transcript
ENSMUST00000161353 (Reln-010) 21976038-22010264 retained_intron
ENSMUST00000161356 (Reln-001) 21884454-22344702 protein_coding
ENSMUST00000161782 (Reln-007) 22342071-22344702 processed_transcript
ENSMUST00000162427 (Reln-008) 22003033-22344690 retained_intron
ENSMUST00000162622 (Reln-005) 22170326-22344690 retained_intron
ENSMUST00000162637 (Reln-004) 22128073-22344690 retained_intron
ENSMUST00000162876 (Reln-011) 22060313-22134669 nonsense_mediated_decay
ENSMUSG00000073152 (Gm10475)
predicted gene 10475 		ENSMUST00000084713 (Gm10475-001) 21910931-21954014 antisense
ENSMUSG00000089793 (Gm16112)
predicted gene 16112 		ENSMUST00000159075 (Gm16112-001) 22292787-22293168 processed_pseudogene
ENSMUSG00000089910 (Gm16113)
predicted gene 16113 		ENSMUST00000159629 (Gm16113-001) 22281211-22281582 processed_pseudogene
ENSMUSG00000090008 (Gm16111)
predicted gene 16111 		ENSMUST00000162128 (Gm16111-001) 21889780-21890064 processed_pseudogene
ENSMUSG00000090226 (Gm16110)
predicted gene 16110 		ENSMUST00000161473 (Gm16110-001) 22334442-22336118 antisense
ENSMUSG00000096346 (Gm22887)
predicted gene, 22887 		ENSMUST00000178586 (Gm22887-201) 22534737-22534843 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040Z_0001ENSG00000164815ENST00000297431ENST00000422497ENST00000447452ENST00000448563ENST00000463152ENST00000477223ENST00000485726ENSG00000189056ENST00000343529ENST00000424685ENST00000428762ENST00000429186ENST00000473457ENST00000473945ENST00000478148ENSG00000222386ENST00000410454ENSG00000234715ENST00000422488CIL_00040Z_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00040Z_0001ENSG00000164815ENST00000297431ENST00000422497ENST00000447452ENST00000477223ENST00000485726ENSG00000189056ENST00000343529ENST00000424685ENST00000428762ENST00000429186ENSG00000222386ENST00000410454ENSG00000234715ENST00000422488CIL_00040Z_0002ENSMUSG00000029012ENSMUST00000030872ENSMUST00000135906ENSMUST00000138248ENSMUST00000141263ENSMUST00000142987ENSMUSG00000042453ENSMUST00000062372ENSMUST00000159768ENSMUST00000160791ENSMUST00000161356ENSMUST00000162622ENSMUSG00000073152ENSMUST00000084713ENSMUSG00000089793ENSMUST00000159075ENSMUSG00000089910ENSMUST00000159629ENSMUSG00000090008ENSMUST00000162128ENSMUSG00000090226ENSMUST00000161473ENSMUSG00000096346ENSMUST00000178586
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000164815 ENST00000297431 2.077±0.00 2.297±0.00 0.790±0.00 5.567±1.03 3.789±0.71 2.240±1.38 1.005±0.51 2.888±1.78 2.811±0.66 1.456±0.30 1.963±0.35 9.516±8.28 5.536±2.35 17.676±3.92
ENST00000422497 N/A N/A N/A N/A N/A N/A N/A N/A 0.672±0.00 N/A N/A N/A N/A N/A
ENST00000447452 N/A N/A N/A N/A N/A 0.749±0.00 0.371±0.00 N/A N/A 0.539±0.00 N/A N/A N/A N/A
ENST00000448563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477223 N/A N/A N/A N/A N/A 1.773±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485726 N/A N/A N/A N/A N/A 0.795±0.00 N/A N/A 0.729±0.00 N/A N/A N/A N/A N/A
ENSG00000189056 ENST00000343529 0.298±0.00 0.442±0.00 0.044±0.00 2.845±0.00 0.189±0.00 0.373±0.09 0.134±0.08 3.496±3.23 1.671±1.02 0.164±0.00 0.124±0.05 0.207±0.08 0.073±0.07 0.585±0.09
ENST00000424685 N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A
ENST00000428762 N/A N/A 0.044±0.00 1.324±0.58 0.636±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 0.085±0.08 N/A
ENST00000429186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 0.039±0.00 N/A
ENST00000473457 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222386 ENST00000410454 N/A N/A N/A 0.057±0.00 N/A 2.327±0.00 N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000234715 ENST00000422488 0.039±0.00 N/A N/A 0.054±0.00 0.042±0.00 N/A 0.009±0.00 0.056±0.00 N/A N/A N/A 0.026±0.00 N/A 0.200±0.06
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029012 ENSMUST00000030872 3.270±0.47 0.841±0.36 2.729±0.95 3.972±1.46 1.937±0.80 1.605±0.74 1.575±0.73 1.862±0.48 6.267±5.50 2.762±0.27 3.953±0.19 2.743±2.76 8.648±4.08 3.376±1.26
ENSMUST00000051985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135906 N/A N/A N/A N/A N/A N/A 0.196±0.00 0.408±0.00 N/A N/A N/A 1.364±0.21 N/A N/A
ENSMUST00000138248 4.443±0.13 0.806±0.00 N/A N/A 1.533±0.31 1.700±0.57 N/A 1.645±0.23 N/A 2.159±0.33 N/A 2.353±0.96 N/A N/A
ENSMUST00000141263 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.699±0.21 1.645±0.00
ENSMUST00000142987 N/A 2.823±1.17 N/A N/A 0.679±0.00 0.977±0.47 0.439±0.00 N/A 0.778±0.00 N/A N/A 1.663±1.29 N/A 1.445±0.00
ENSMUSG00000042453 ENSMUST00000062372 N/A 0.233±0.05 0.777±0.00 N/A 0.489±0.19 0.846±0.23 0.169±0.08 0.172±0.08 5.267±0.19 0.634±0.24 N/A 2.670±0.84 N/A N/A
ENSMUST00000159741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159768 0.207±0.03 0.696±0.22 1.239±0.04 9.269±1.58 N/A 0.573±0.00 0.263±0.02 0.426±0.12 5.626±1.10 N/A N/A N/A 0.071±0.00 0.837±0.09
ENSMUST00000160707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160791 N/A N/A N/A N/A N/A N/A N/A N/A 13.962±0.00 N/A 0.663±0.18 N/A 0.171±0.03 1.115±0.00
ENSMUST00000161353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161356 N/A N/A N/A 8.584±1.30 N/A N/A 0.099±0.00 N/A N/A N/A N/A 1.521±0.29 0.068±0.00 N/A
ENSMUST00000161782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162622 N/A 0.645±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000073152 ENSMUST00000084713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.061±0.22
ENSMUSG00000089793 ENSMUST00000159075 N/A N/A 0.037±0.00 0.102±0.00 N/A N/A N/A N/A 0.100±0.08 N/A N/A N/A N/A N/A
ENSMUSG00000089910 ENSMUST00000159629 N/A N/A N/A 0.325±0.14 N/A N/A N/A N/A 0.189±0.16 0.173±0.00 N/A 0.596±0.00 0.124±0.00 0.369±0.09
ENSMUSG00000090008 ENSMUST00000162128 0.694±0.16 0.755±0.00 0.147±0.00 1.462±0.76 0.875±0.09 0.814±0.00 0.585±0.00 N/A 0.806±0.69 N/A 0.248±0.09 N/A 0.225±0.00 0.438±0.12
ENSMUSG00000090226 ENSMUST00000161473 N/A N/A N/A 0.067±0.03 N/A N/A N/A N/A 0.178±0.02 N/A N/A N/A 0.028±0.00 N/A
ENSMUSG00000096346 ENSMUST00000178586 N/A N/A N/A 16.813±0.00 N/A N/A N/A N/A N/A N/A N/A 16.840±0.00 N/A N/A

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