C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113368-ENSG00000173926 CGP 9606 5:126776623-127030808
GeneTranscriptPositionBiotype
ENSG00000113368 (LMNB1)
lamin B1 		ENST00000261366 (LMNB1-001) 126777148-126837020 protein_coding
ENST00000395354 (LMNB1-003) 126777189-126819234 protein_coding
ENST00000460265 (LMNB1-002) 126776623-126837014 processed_transcript
ENST00000463908 (LMNB1-006) 126777379-126810255 processed_transcript
ENST00000472034 (LMNB1-004) 126777161-126818979 processed_transcript
ENST00000492190 (LMNB1-005) 126777161-126804914 processed_transcript
ENST00000494185 (LMNB1-007) 126811713-126821081 retained_intron
ENST00000504788 (LMNB1-009) 126777153-126836571 processed_transcript
ENST00000512460 (LMNB1-011) 126818928-126826109 retained_intron
ENSG00000173926 (MARCH3)
membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase 		ENST00000308660 (MARCH3-001) 126867714-127030808 protein_coding
ENST00000502289 (MARCH3-003) 126914931-127030169 processed_transcript
ENST00000504239 (MARCH3-005) 126898873-126914990 processed_transcript
ENST00000506088 (MARCH3-006) 126870191-126878397 retained_intron
ENST00000515241 (MARCH3-002) 126914661-126918228 protein_coding
CIL_00041J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024590-ENSMUSG00000032656 CGP 10090 18:56707813-56925548
GeneTranscriptPositionBiotype
ENSMUSG00000024590 (Lmnb1)
lamin B1 		ENSMUST00000025486 (Lmnb1-001) 56707813-56753424 protein_coding
ENSMUST00000128651 (Lmnb1-002) 56728441-56733456 retained_intron
ENSMUSG00000032656 (March3)
membrane-associated ring finger (C3HC4) 3 		ENSMUST00000035278 (March3-003) 56775852-56812019 protein_coding
ENSMUST00000102912 (March3-001) 56761716-56925548 protein_coding
ENSMUST00000153044 (March3-002) 56803669-56925515 retained_intron
ENSMUSG00000087597 (Gm15345)
predicted gene 15345 		ENSMUST00000128240 (Gm15345-001) 56769717-56801688 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041J_0001ENSG00000113368ENST00000261366ENST00000395354ENST00000460265ENST00000463908ENST00000472034ENST00000492190ENST00000494185ENST00000504788ENST00000512460ENSG00000173926ENST00000308660ENST00000502289ENST00000504239ENST00000506088ENST00000515241CIL_00041J_0002ENSMUSG00000024590ENSMUST00000025486ENSMUST00000128651ENSMUSG00000032656ENSMUST00000035278ENSMUST00000102912ENSMUST00000153044ENSMUSG00000087597ENSMUST00000128240
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00041J_0001ENSG00000113368ENST00000261366ENST00000395354ENST00000460265ENST00000463908ENST00000472034ENST00000492190ENST00000494185ENST00000504788ENST00000512460ENSG00000173926ENST00000308660ENST00000502289ENST00000504239ENST00000506088ENST00000515241CIL_00041J_0002ENSMUSG00000024590ENSMUST00000025486ENSMUST00000128651ENSMUSG00000032656ENSMUST00000035278ENSMUST00000102912ENSMUSG00000087597ENSMUST00000128240
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113368 ENST00000261366 1.274±0.00 3.110±0.00 0.235±0.00 0.793±0.68 1.366±0.03 3.706±1.20 0.492±0.00 0.528±0.00 1.356±0.00 2.749±2.35 N/A 4.414±3.65 6.594±2.68 2.181±0.00
ENST00000395354 N/A N/A N/A N/A 1.082±0.00 N/A N/A 0.481±0.00 N/A N/A 0.337±0.00 1.732±0.00 N/A N/A
ENST00000460265 N/A N/A N/A 0.183±0.00 N/A N/A N/A N/A N/A N/A N/A 1.220±0.00 N/A N/A
ENST00000463908 N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A 2.322±0.00 1.581±0.00 N/A N/A N/A N/A
ENST00000472034 N/A N/A 0.421±0.00 N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492190 N/A N/A 0.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494185 N/A N/A N/A N/A N/A N/A 0.257±0.00 1.247±0.00 N/A N/A 0.688±0.00 N/A N/A 8.084±0.00
ENST00000504788 1.310±0.00 2.680±0.00 N/A 0.731±0.06 3.702±0.00 2.648±2.06 0.081±0.00 0.819±0.00 N/A 1.752±0.49 0.096±0.00 5.061±2.92 3.187±2.50 3.751±0.26
ENST00000512460 N/A 3.472±0.00 0.445±0.00 2.040±0.00 N/A N/A N/A N/A 0.877±0.00 N/A N/A 20.282±0.00 18.285±0.00 8.837±1.90
ENSG00000173926 ENST00000308660 0.293±0.00 2.507±0.00 0.014±0.00 0.819±0.00 0.317±0.17 1.049±0.89 0.935±0.65 0.361±0.00 0.098±0.05 0.590±0.42 0.209±0.03 0.722±0.14 0.443±0.07 2.041±0.11
ENST00000502289 N/A N/A N/A 2.924±0.00 1.249±0.00 2.711±1.16 N/A N/A N/A 4.881±0.00 0.751±0.33 N/A 1.067±0.00 N/A
ENST00000504239 N/A N/A N/A N/A N/A N/A N/A N/A 1.804±0.00 N/A N/A N/A N/A N/A
ENST00000506088 2.517±0.00 6.333±0.00 N/A 1.011±0.72 1.235±0.00 2.905±1.93 2.663±1.87 0.936±0.00 0.619±0.00 2.624±0.00 N/A 2.118±0.99 2.999±1.36 27.137±19.18
ENST00000515241 N/A N/A 0.407±0.00 0.237±0.00 2.458±0.00 1.774±0.00 N/A N/A 0.745±0.00 0.844±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024590 ENSMUST00000025486 3.379±2.28 1.715±0.36 4.695±0.36 27.412±17.86 3.364±2.19 4.643±0.98 0.448±0.25 0.947±0.36 15.772±17.80 2.449±0.72 2.129±0.27 15.411±7.08 41.696±30.09 3.329±0.37
ENSMUST00000128651 N/A N/A N/A 8.668±0.00 N/A N/A N/A N/A N/A N/A N/A 80.034±0.00 194.823±165.20 26.795±0.00
ENSMUSG00000032656 ENSMUST00000035278 7.814±1.10 N/A 1.384±0.00 0.446±0.00 3.298±1.37 4.263±1.15 2.143±0.26 2.916±0.42 24.660±24.84 2.372±0.43 0.388±0.12 1.759±0.66 1.152±0.24 2.764±0.92
ENSMUST00000102912 N/A N/A N/A N/A N/A N/A N/A N/A 17.997±1.03 N/A 0.071±0.01 N/A N/A N/A
ENSMUST00000153044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087597 ENSMUST00000128240 0.335±0.20 0.097±0.01 0.016±0.00 N/A 0.204±0.11 0.095±0.00 0.293±0.25 0.082±0.03 0.188±0.04 0.144±0.05 N/A 0.201±0.13 0.052±0.04 0.044±0.00

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