C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166405-ENSG00000166407 CGP 9606 11:8106093-8268716
GeneTranscriptPositionBiotype
ENSG00000166407 (LMO1)
LIM domain only 1 (rhombotin 1) 		ENST00000335790 (LMO1-001) 8224304-8263858 protein_coding
ENST00000428101 (LMO1-003) 8224314-8268716 protein_coding
ENST00000524379 (LMO1-002) 8224449-8263388 retained_intron
ENST00000534484 (LMO1-004) 8224479-8263858 protein_coding
ENSG00000246820 (RP11-379P15.1)
 ENST00000499752 (RP11-379P15.1-001) 8169167-8178903 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00043B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048330-ENSMUSG00000036111 CGP 10090 7:109034312-109170308
GeneTranscriptPositionBiotype
ENSMUSG00000031028 (Tub)
tubby candidate gene 		ENSMUST00000033341 (Tub-001) 109010825-109034460 protein_coding
ENSMUST00000119474 (Tub-002) 109017542-109030482 protein_coding
ENSMUST00000147943 (Tub-003) 109027223-109029360 retained_intron
ENSMUSG00000036111 (Lmo1)
LIM domain only 1 		ENSMUST00000036992 (Lmo1-201) 109138572-109170308 protein_coding
ENSMUSG00000048330 (Ric3)
resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 		ENSMUST00000055993 (Ric3-001) 109034312-109083331 protein_coding
ENSMUST00000120876 (Ric3-002) 109037948-109083322 protein_coding
ENSMUST00000129629 (Ric3-006) 109080744-109083305 processed_transcript
ENSMUST00000133876 (Ric3-003) 109045382-109083311 retained_intron
ENSMUST00000137385 (Ric3-004) 109057487-109083322 retained_intron
ENSMUST00000147580 (Ric3-005) 109034312-109057824 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043B_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000246820ENST00000499752CIL_00043B_0002ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000036111ENSMUST00000036992ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000129629ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043B_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000246820ENST00000499752CIL_00043B_0002ENSMUSG00000031028ENSMUST00000033341ENSMUST00000119474ENSMUST00000147943ENSMUSG00000036111ENSMUST00000036992ENSMUSG00000048330ENSMUST00000055993ENSMUST00000120876ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166407 ENST00000335790 N/A N/A 0.120±0.00 0.170±0.10 N/A N/A N/A 0.094±0.00 0.062±0.00 N/A 1.685±0.00 N/A 0.119±0.00 0.170±0.00
ENST00000428101 N/A N/A N/A 0.946±0.00 0.153±0.00 N/A 0.297±0.08 0.178±0.00 N/A N/A 1.106±0.80 N/A 0.216±0.00 0.960±0.06
ENST00000524379 N/A N/A N/A N/A 0.114±0.00 0.506±0.44 N/A N/A N/A N/A N/A N/A 0.201±0.00 0.333±0.00
ENST00000534484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 0.232±0.00
ENSG00000246820 ENST00000499752 N/A N/A N/A 0.015±0.00 0.054±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.184±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031028 ENSMUST00000033341 0.518±0.23 14.313±5.67 N/A 27.410±5.20 0.554±0.24 0.699±0.03 0.116±0.02 0.180±0.09 0.026±0.01 0.243±0.02 0.082±0.00 0.962±0.42 0.100±0.04 2.502±0.76
ENSMUST00000119474 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.779±0.19 N/A N/A
ENSMUST00000147943 N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000036111 ENSMUST00000036992 4.343±2.82 3.363±0.53 52.668±2.65 22.366±15.55 2.299±0.77 0.348±0.15 1.454±0.92 0.901±0.23 0.110±0.05 0.414±0.05 0.783±0.87 1.761±0.70 0.255±0.21 1.360±0.67
ENSMUSG00000048330 ENSMUST00000055993 0.784±0.44 6.988±0.00 N/A N/A N/A 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16
ENSMUST00000120876 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.349±0.00 1.668±0.00 0.142±0.00 N/A
ENSMUST00000129629 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133876 N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137385 N/A 115.715±23.29 N/A N/A N/A 1.925±0.39 N/A 0.892±0.00 0.079±0.03 1.953±0.27 N/A N/A N/A N/A
ENSMUST00000147580 0.601±0.00 8.256±0.45 N/A 8.576±0.00 0.661±0.16 N/A 0.055±0.00 N/A 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10

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