C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00043K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132639-ENSG00000125863 CGP 9606 20:10218830-10434222
GeneTranscriptPositionBiotype
ENSG00000125863 (MKKS)
McKusick-Kaufman syndrome 		ENST00000347364 (MKKS-001) 10401009-10434222 protein_coding
ENST00000399054 (MKKS-002) 10405184-10431922 protein_coding
ENST00000609375 (MKKS-003) 10413520-10431922 protein_coding
ENSG00000132639 (SNAP25)
synaptosomal-associated protein, 25kDa 		ENST00000254976 (SNAP25-003) 10218830-10307418 protein_coding
ENST00000304886 (SNAP25-004) 10218833-10307418 protein_coding
ENST00000430336 (SNAP25-002) 10219066-10293278 protein_coding
ENST00000492814 (SNAP25-001) 10275519-10278069 processed_transcript
ENST00000495883 (SNAP25-005) 10296230-10307418 processed_transcript
ENSG00000214835 (RPL23AP6)
ribosomal protein L23a pseudogene 6 		ENST00000446637 (RPL23AP6-001) 10349157-10349628 processed_pseudogene
ENSG00000230750 (SDAD1P2)
SDA1 domain containing 1 pseudogene 2 		ENST00000441308 (SDAD1P2-001) 10385779-10387806 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00043K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027273-ENSMUSG00000027274 CGP 10090 2:136713453-136891389
GeneTranscriptPositionBiotype
ENSMUSG00000027273 (Snap25)
synaptosomal-associated protein 25 		ENSMUST00000028727 (Snap25-001) 136713453-136782428 protein_coding
ENSMUST00000110098 (Snap25-002) 136713478-136781351 protein_coding
ENSMUST00000125486 (Snap25-003) 136713454-136762909 retained_intron
ENSMUSG00000027274 (Mkks)
McKusick-Kaufman syndrome 		ENSMUST00000028730 (Mkks-002) 136873780-136891382 protein_coding
ENSMUST00000110089 (Mkks-001) 136873780-136891389 protein_coding
ENSMUST00000144275 (Mkks-003) 136881219-136891154 protein_coding
ENSMUSG00000027281 (Slx4ip)
SLX4 interacting protein 		ENSMUST00000028737 (Slx4ip-201) 136891218-137069649 protein_coding
ENSMUST00000099311 (Slx4ip-001) 136892168-137071950 protein_coding
ENSMUST00000130856 (Slx4ip-004) 136892168-137068271 processed_transcript
ENSMUST00000135260 (Slx4ip-003) 136891608-137071950 processed_transcript
ENSMUST00000141463 (Slx4ip-002) 136891501-137000273 protein_coding
ENSMUST00000180277 (Slx4ip-202) 136905543-137069778 protein_coding
ENSMUSG00000082849 (Gm14053)
predicted gene 14053 		ENSMUST00000121662 (Gm14053-001) 136744146-136744615 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043K_0001ENSG00000125863ENST00000347364ENST00000399054ENST00000609375ENSG00000132639ENST00000254976ENST00000304886ENST00000430336ENST00000492814ENST00000495883ENSG00000214835ENST00000446637ENSG00000230750ENST00000441308CIL_00043K_0002ENSMUSG00000027273ENSMUST00000028727ENSMUST00000110098ENSMUST00000125486ENSMUSG00000027274ENSMUST00000028730ENSMUST00000110089ENSMUST00000144275ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000130856ENSMUST00000135260ENSMUST00000141463ENSMUST00000180277ENSMUSG00000082849ENSMUST00000121662
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00043K_0001ENSG00000125863ENST00000347364ENST00000399054ENST00000609375ENSG00000132639ENST00000254976ENST00000304886ENST00000430336ENST00000492814ENST00000495883ENSG00000214835ENST00000446637ENSG00000230750ENST00000441308CIL_00043K_0002ENSMUSG00000027273ENSMUST00000028727ENSMUST00000110098ENSMUST00000125486ENSMUSG00000027274ENSMUST00000028730ENSMUST00000110089ENSMUST00000144275ENSMUSG00000027281ENSMUST00000028737ENSMUST00000099311ENSMUST00000135260ENSMUST00000180277ENSMUSG00000082849ENSMUST00000121662
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125863 ENST00000347364 0.269±0.00 0.279±0.00 0.474±0.00 1.226±0.51 0.291±0.01 0.208±0.00 0.127±0.00 0.550±0.00 0.439±0.00 N/A 0.127±0.00 0.490±0.07 0.486±0.00 0.497±0.00
ENST00000399054 3.454±0.00 4.446±0.00 1.477±0.00 6.834±4.04 3.319±3.03 8.302±0.00 5.087±4.70 9.368±8.11 3.947±2.08 2.444±1.46 2.590±1.13 5.100±2.74 5.543±0.69 14.094±1.91
ENST00000609375 4.069±0.00 3.050±0.00 N/A N/A 2.244±1.49 N/A 5.363±0.00 4.489±0.00 N/A N/A 0.821±0.00 4.938±1.61 N/A N/A
ENSG00000132639 ENST00000254976 N/A 0.142±0.00 N/A 466.339±194.05 0.149±0.00 1.131±0.00 N/A 0.093±0.00 0.297±0.17 0.709±0.00 0.172±0.01 N/A 0.402±0.00 1.415±1.07
ENST00000304886 0.050±0.00 0.106±0.00 0.237±0.00 67.094±0.00 0.331±0.20 1.578±0.95 0.108±0.01 0.497±0.00 N/A 0.505±0.00 N/A 1.365±0.86 0.340±0.21 2.244±1.22
ENST00000430336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.00 0.045±0.00 N/A 0.905±0.00
ENST00000492814 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.491±0.00 N/A N/A
ENST00000495883 0.037±0.00 N/A N/A N/A 0.236±0.16 N/A N/A 0.185±0.00 0.204±0.00 0.166±0.00 N/A 0.543±0.33 N/A 0.397±0.00
ENSG00000214835 ENST00000446637 0.032±0.00 0.175±0.00 N/A 0.036±0.00 0.036±0.00 0.066±0.00 0.061±0.00 0.035±0.00 0.031±0.00 0.034±0.00 0.060±0.00 0.063±0.00 N/A N/A
ENSG00000230750 ENST00000441308 N/A N/A N/A N/A 0.005±0.00 N/A N/A 0.005±0.00 N/A N/A 0.005±0.00 N/A N/A 0.020±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027273 ENSMUST00000028727 0.044±0.02 8.532±2.90 0.464±0.06 220.916±270.56 0.145±0.05 1.622±0.28 0.464±0.08 0.160±0.06 0.074±0.09 0.077±0.03 0.021±0.00 0.101±0.05 0.021±0.00 0.046±0.03
ENSMUST00000110098 0.093±0.00 7.223±0.69 0.281±0.04 393.654±0.00 0.137±0.01 3.519±0.72 0.302±0.04 0.384±0.02 0.039±0.02 0.207±0.08 N/A 0.151±0.04 N/A 0.033±0.01
ENSMUST00000125486 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A 0.008±0.00 0.002±0.00 N/A
ENSMUSG00000027274 ENSMUST00000028730 N/A 0.509±0.00 N/A N/A 2.527±0.00 N/A N/A N/A N/A N/A 1.955±0.50 1.113±0.32 N/A N/A
ENSMUST00000110089 6.442±0.53 2.933±0.70 4.555±0.45 4.094±1.02 4.409±1.25 6.000±0.93 9.022±0.77 7.731±1.25 4.554±1.43 4.211±0.19 3.269±0.39 2.900±0.70 2.841±1.86 1.395±0.15
ENSMUST00000144275 N/A N/A N/A 19.819±0.00 N/A N/A 7.135±0.00 N/A 3.417±0.11 N/A 23.303±0.83 6.845±3.63 9.748±3.60 4.760±0.00
ENSMUSG00000027281 ENSMUST00000028737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.892±0.22 N/A N/A
ENSMUST00000099311 0.696±0.00 0.222±0.00 0.786±0.27 1.443±0.21 N/A N/A N/A N/A 1.063±0.42 0.523±0.03 0.804±0.09 0.965±0.17 1.337±0.24 0.732±0.30
ENSMUST00000130856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135260 N/A N/A 0.695±0.00 1.454±0.35 0.601±0.06 N/A N/A N/A 0.572±0.15 N/A 0.672±0.00 0.630±0.24 1.160±0.00 N/A
ENSMUST00000141463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000180277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.636±0.00 1.216±0.32 0.909±0.00
ENSMUSG00000082849 ENSMUST00000121662 N/A N/A N/A 0.183±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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