C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000471_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000031763-ENSDARG00000010207 CGP 7955 18:19428986-19586920
GeneTranscriptPositionBiotype
ENSDARG00000010207 (smad3b)
MAD, mothers against decapentaplegic homolog 3b (Drosophila) 		ENSDART00000043455 (smad3b-001) 19553585-19586920 protein_coding
ENSDARG00000031763 (smad6b)
SMAD family member 6b 		ENSDART00000100569 (smad6b-001) 19428986-19479772 protein_coding
CIL_000471_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137834-ENSG00000166949 CGP 9606 15:66702228-67195195
GeneTranscriptPositionBiotype
ENSG00000137834 (SMAD6)
SMAD family member 6 		ENST00000288840 (SMAD6-001) 66702228-66782848 protein_coding
ENST00000557916 (SMAD6-002) 66703259-66781313 nonsense_mediated_decay
ENST00000558937 (SMAD6-004) 66711697-66717537 protein_coding
ENST00000559931 (SMAD6-003) 66711676-66781313 nonsense_mediated_decay
ENST00000612349 (SMAD6-006) 66703077-66708274 processed_transcript
ENSG00000166949 (SMAD3)
SMAD family member 3 		ENST00000327367 (SMAD3-001) 67065845-67195195 protein_coding
ENST00000439724 (SMAD3-003) 67138001-67190894 protein_coding
ENST00000537194 (SMAD3-004) 67166019-67190762 protein_coding
ENST00000540846 (SMAD3-002) 67125716-67190762 protein_coding
ENST00000558428 (SMAD3-009) 67166531-67181420 protein_coding
ENST00000558739 (SMAD3-014) 67138235-67165356 protein_coding
ENST00000558763 (SMAD3-006) 67186662-67191521 retained_intron
ENST00000558827 (SMAD3-008) 67166531-67184778 protein_coding
ENST00000558894 (SMAD3-013) 67128103-67187447 protein_coding
ENST00000559092 (SMAD3-015) 67098582-67165035 protein_coding
ENST00000559460 (SMAD3-012) 67063763-67166838 protein_coding
ENST00000559937 (SMAD3-010) 67077986-67170675 retained_intron
ENST00000560175 (SMAD3-016) 67098679-67170604 protein_coding
ENST00000560402 (SMAD3-011) 67174303-67193180 retained_intron
ENST00000560424 (SMAD3-007) 67184775-67190841 protein_coding
ENSG00000259202 (RP11-342M21.2)
 ENST00000558463 (RP11-342M21.2-001) 67142734-67146939 antisense
ENSG00000259246 (HMGN2P47)
high mobility group nucleosomal binding domain 2 pseudogene 47 		ENST00000559378 (HMGN2P47-001) 67000777-67001181 processed_pseudogene
ENSG00000259289 (RP11-798K3.3)
 ENST00000558436 (RP11-798K3.3-001) 66931537-66956518 lincRNA
ENSG00000259347 (RP11-798K3.2)
 ENST00000558071 (RP11-798K3.2-003) 66986361-67059253 lincRNA
ENST00000558097 (RP11-798K3.2-001) 66986365-67000990 lincRNA
ENST00000560662 (RP11-798K3.2-002) 66986366-66994187 lincRNA
ENSG00000259437 (RP11-798K3.4)
 ENST00000559904 (RP11-798K3.4-001) 66919811-66931755 lincRNA
ENSG00000270490 (RP11-622C24.1)
 ENST00000604293 (RP11-622C24.1-001) 66808404-66810560 processed_pseudogene
ENSG00000274995 (RP11-321F6.2)
 ENST00000612806 (RP11-321F6.2-001) 66740445-66741151 sense_intronic
ENSG00000277152 (RP11-622C24.2)
 ENST00000617013 (RP11-622C24.2-001) 66860303-66867023 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000471_0001ENSDARG00000010207ENSDART00000043455ENSDARG00000031763ENSDART00000100569CIL_000471_0002ENSG00000137834ENST00000288840ENST00000557916ENST00000558937ENST00000559931ENST00000612349ENSG00000166949ENST00000327367ENST00000439724ENST00000537194ENST00000540846ENST00000558428ENST00000558739ENST00000558763ENST00000558827ENST00000558894ENST00000559092ENST00000559460ENST00000559937ENST00000560175ENST00000560402ENST00000560424ENSG00000259202ENST00000558463ENSG00000259246ENST00000559378ENSG00000259289ENST00000558436ENSG00000259347ENST00000558071ENST00000558097ENST00000560662ENSG00000259437ENST00000559904ENSG00000270490ENST00000604293ENSG00000274995ENST00000612806ENSG00000277152ENST00000617013
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000471_0001ENSDARG00000010207ENSDART00000043455ENSDARG00000031763ENSDART00000100569CIL_000471_0002ENSG00000137834ENST00000288840ENST00000557916ENST00000559931ENST00000612349ENSG00000166949ENST00000327367ENST00000439724ENSG00000259202ENST00000558463ENSG00000259246ENST00000559378ENSG00000259289ENST00000558436ENSG00000259347ENST00000558071ENST00000558097ENST00000560662ENSG00000259437ENST00000559904ENSG00000270490ENST00000604293ENSG00000274995ENST00000612806ENSG00000277152ENST00000617013
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010207 ENSDART00000043455 N/A N/A N/A 3.956±1.45 N/A N/A 4.299±3.89 1.344±0.00 0.343±0.00 N/A 10.832±0.00 N/A N/A N/A
ENSDARG00000031763 ENSDART00000100569 N/A N/A N/A 1.498±0.86 N/A N/A 8.566±3.66 0.780±0.00 0.165±0.00 N/A 4.488±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137834 ENST00000288840 2.504±0.00 1.859±0.00 0.831±0.00 0.770±0.21 1.706±1.54 1.216±0.50 2.623±0.00 2.424±0.98 1.180±0.51 2.899±0.54 1.219±0.00 2.735±1.51 7.420±3.23 1.903±1.07
ENST00000557916 N/A N/A N/A N/A N/A N/A N/A 3.859±2.30 4.659±0.00 5.291±0.00 0.366±0.00 N/A N/A N/A
ENST00000558937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559931 N/A 3.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.065±0.00 N/A 5.286±0.00
ENST00000612349 1.012±0.00 0.746±0.00 0.599±0.00 0.358±0.22 0.792±0.32 1.014±0.14 0.530±0.27 0.715±0.36 0.586±0.08 1.432±0.00 N/A 2.274±1.17 1.392±0.41 0.510±0.06
ENSG00000166949 ENST00000327367 14.384±0.00 7.527±0.00 2.526±0.00 2.352±0.86 4.456±3.42 4.570±3.40 1.749±0.76 3.454±1.73 2.368±0.92 6.815±5.60 5.972±1.49 8.354±3.92 6.992±0.78 2.849±1.23
ENST00000439724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.159±0.00 N/A 4.341±1.08 N/A
ENST00000537194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259202 ENST00000558463 N/A 0.266±0.00 0.895±0.00 N/A N/A 0.436±0.00 N/A 2.014±0.00 N/A N/A N/A 0.103±0.00 N/A 0.257±0.05
ENSG00000259246 ENST00000559378 N/A N/A 1.783±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.169±0.00
ENSG00000259289 ENST00000558436 0.135±0.00 0.214±0.00 N/A N/A 0.223±0.00 0.058±0.00 0.107±0.00 0.024±0.00 0.021±0.00 N/A N/A 0.136±0.08 N/A 0.116±0.08
ENSG00000259347 ENST00000558071 0.150±0.00 N/A N/A 0.360±0.00 2.084±0.00 N/A N/A 0.154±0.00 0.228±0.00 0.199±0.00 N/A N/A N/A 0.278±0.00
ENST00000558097 0.167±0.00 N/A N/A 0.170±0.00 N/A N/A N/A 0.609±0.00 N/A 0.192±0.00 N/A 0.084±0.00 N/A N/A
ENST00000560662 0.536±0.00 N/A 0.662±0.00 0.296±0.00 N/A N/A 0.163±0.00 0.409±0.00 1.391±0.40 N/A N/A N/A N/A 0.200±0.00
ENSG00000259437 ENST00000559904 N/A 0.125±0.00 N/A 0.130±0.00 0.091±0.00 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270490 ENST00000604293 N/A N/A N/A N/A 0.020±0.01 N/A N/A N/A 0.089±0.00 0.061±0.00 N/A 0.069±0.05 0.090±0.00 0.010±0.00
ENSG00000274995 ENST00000612806 0.044±0.00 0.133±0.00 N/A N/A N/A 1.029±0.00 0.119±0.01 N/A 0.158±0.06 0.281±0.00 N/A 0.066±0.00 N/A N/A
ENSG00000277152 ENST00000617013 0.018±0.00 0.074±0.00 0.138±0.00 0.015±0.00 0.329±0.26 0.101±0.08 0.080±0.04 0.027±0.02 0.287±0.29 0.422±0.40 0.119±0.00 0.148±0.10 0.041±0.03 0.064±0.01

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