C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00047J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000079313-ENSG00000129911 CGP 9606 19:1815246-1863568
GeneTranscriptPositionBiotype
ENSG00000079313 (REXO1)
REX1, RNA exonuclease 1 homolog (S. cerevisiae) 		ENST00000170168 (REXO1-001) 1815246-1848463 protein_coding
ENST00000586291 (REXO1-006) 1816094-1816765 retained_intron
ENST00000586343 (REXO1-003) 1818558-1821567 nonsense_mediated_decay
ENST00000587404 (REXO1-007) 1816039-1816387 retained_intron
ENST00000587524 (REXO1-002) 1827648-1848446 processed_transcript
ENST00000588743 (REXO1-005) 1817179-1818735 protein_coding
ENST00000590936 (REXO1-004) 1815970-1819963 nonsense_mediated_decay
ENSG00000129911 (KLF16)
Kruppel-like factor 16 		ENST00000250916 (KLF16-001) 1852399-1863568 protein_coding
ENST00000541015 (KLF16-002) 1852399-1863497 nonsense_mediated_decay
ENST00000592313 (KLF16-003) 1854318-1862858 protein_coding
ENST00000617223 (KLF16-201) 1852400-1863497 protein_coding
ENSG00000267007 (CTB-31O20.3)
 ENST00000586259 (CTB-31O20.3-001) 1815249-1815873 antisense
ENSG00000267141 (CTB-31O20.8)
 ENST00000586694 (CTB-31O20.8-001) 1860250-1862019 antisense
CIL_00047J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047417-ENSMUSG00000035397 CGP 10090 10:80540922-80577321
GeneTranscriptPositionBiotype
ENSMUSG00000035397 (Klf16)
Kruppel-like factor 16 		ENSMUST00000038558 (Klf16-001) 80567124-80577321 protein_coding
ENSMUSG00000047417 (Rexo1)
REX1, RNA exonuclease 1 homolog (S. cerevisiae) 		ENSMUST00000057910 (Rexo1-001) 80540925-80561560 protein_coding
ENSMUST00000182260 (Rexo1-007) 80541664-80547921 protein_coding
ENSMUST00000182604 (Rexo1-002) 80542273-80546802 retained_intron
ENSMUST00000182682 (Rexo1-004) 80540922-80545836 retained_intron
ENSMUST00000183073 (Rexo1-005) 80545997-80549462 nonsense_mediated_decay
ENSMUST00000183139 (Rexo1-006) 80547327-80549460 processed_transcript
ENSMUST00000183160 (Rexo1-008) 80542616-80544313 nonsense_mediated_decay
ENSMUST00000183233 (Rexo1-003) 80542273-80546470 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047J_0001ENSG00000079313ENST00000170168ENST00000586291ENST00000586343ENST00000587404ENST00000587524ENST00000588743ENST00000590936ENSG00000129911ENST00000250916ENST00000541015ENST00000592313ENST00000617223ENSG00000267007ENST00000586259ENSG00000267141ENST00000586694CIL_00047J_0002ENSMUSG00000035397ENSMUST00000038558ENSMUSG00000047417ENSMUST00000057910ENSMUST00000182260ENSMUST00000182604ENSMUST00000182682ENSMUST00000183073ENSMUST00000183139ENSMUST00000183160ENSMUST00000183233
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047J_0001ENSG00000079313ENST00000170168ENST00000586291ENST00000587524ENST00000588743ENST00000590936ENSG00000129911ENST00000250916ENST00000541015ENST00000617223ENSG00000267007ENST00000586259ENSG00000267141ENST00000586694CIL_00047J_0002ENSMUSG00000035397ENSMUST00000038558ENSMUSG00000047417ENSMUST00000057910ENSMUST00000182260ENSMUST00000182604ENSMUST00000183233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079313 ENST00000170168 5.274±0.00 9.834±0.00 N/A 6.583±0.00 5.145±0.00 2.940±0.00 3.754±0.00 2.267±1.87 1.552±0.95 2.989±2.14 2.347±2.30 7.681±3.41 9.817±4.62 14.958±2.36
ENST00000586291 N/A N/A N/A N/A N/A N/A N/A 1.401±0.00 N/A N/A 1.195±0.00 N/A N/A N/A
ENST00000586343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587524 N/A N/A N/A N/A 1.198±0.00 N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A
ENST00000588743 N/A N/A N/A N/A N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A N/A N/A
ENST00000590936 7.548±0.00 19.794±0.00 N/A 7.198±5.74 5.676±4.58 3.899±2.89 2.550±0.00 8.134±0.00 3.374±0.00 5.039±0.00 N/A 15.000±3.27 9.038±0.00 42.690±5.73
ENSG00000129911 ENST00000250916 2.481±0.00 N/A 0.196±0.00 4.318±3.05 2.305±1.39 2.817±2.15 1.756±1.71 3.231±2.56 3.793±3.61 17.990±0.00 0.512±0.47 6.695±7.98 4.373±2.55 3.176±0.62
ENST00000541015 N/A N/A 0.156±0.00 N/A N/A N/A N/A N/A 0.364±0.00 N/A N/A N/A N/A N/A
ENST00000592313 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617223 N/A N/A 0.157±0.00 N/A N/A N/A N/A N/A 0.366±0.00 N/A N/A N/A N/A N/A
ENSG00000267007 ENST00000586259 N/A 39.464±0.00 N/A N/A 20.289±0.00 16.439±0.00 N/A 18.439±0.00 8.416±0.00 18.537±0.00 2.277±0.00 N/A 26.760±0.00 59.785±0.00
ENSG00000267141 ENST00000586694 0.052±0.00 0.112±0.00 N/A N/A N/A N/A 0.055±0.00 N/A N/A 0.113±0.00 N/A 0.848±0.99 0.143±0.00 0.054±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035397 ENSMUST00000038558 8.520±2.54 14.280±2.33 5.601±1.27 6.436±1.90 13.372±7.40 13.239±0.82 1.756±0.58 4.195±0.77 6.212±5.62 11.561±1.65 0.813±0.19 19.300±8.73 9.082±4.84 2.867±1.42
ENSMUSG00000047417 ENSMUST00000057910 4.969±2.43 7.098±4.93 4.181±0.26 8.539±4.27 5.740±3.46 5.694±2.83 1.304±0.33 2.196±0.37 4.973±2.79 6.930±1.29 1.055±0.13 6.789±2.67 5.321±1.76 6.613±0.44
ENSMUST00000182260 7.644±1.31 16.483±2.54 4.196±0.00 11.028±1.28 13.632±5.92 7.813±2.49 3.426±0.89 7.584±1.72 6.069±1.31 11.405±2.47 1.604±0.46 21.281±7.38 6.740±3.81 N/A
ENSMUST00000182604 N/A 8.701±0.85 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.005±17.62
ENSMUST00000182682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183233 N/A N/A 3.962±0.00 10.845±0.00 3.968±0.00 N/A 2.919±0.00 N/A 6.684±0.72 N/A N/A 10.210±2.05 10.329±4.09 22.784±2.42

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