C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000073688-ENSDARG00000086393 CGP 7955 7:17581711-17803249
GeneTranscriptPositionBiotype
ENSDARG00000073688 (NAV2 (2 of 2))
neuron navigator 2 		ENSDART00000113332 (NAV2 (2 of 2)-201) 17581711-17790234 protein_coding
ENSDARG00000086393 (dbx1a)
developing brain homeobox 1a 		ENSDART00000022441 (dbx1a-201) 17799842-17803249 protein_coding
CIL_0004AW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166833-ENSG00000109851 CGP 9606 11:19350724-20160613
GeneTranscriptPositionBiotype
ENSG00000109851 (DBX1)
developing brain homeobox 1 		ENST00000524983 (DBX1-001) 20156155-20160613 protein_coding
ENSG00000166833 (NAV2)
neuron navigator 2 		ENST00000349880 (NAV2-003) 19713366-20121598 protein_coding
ENST00000360655 (NAV2-008) 19350724-20121598 protein_coding
ENST00000396085 (NAV2-002) 19713335-20121598 protein_coding
ENST00000396087 (NAV2-001) 19713597-20118574 protein_coding
ENST00000525025 (NAV2-012) 20107245-20114680 retained_intron
ENST00000525322 (NAV2-006) 20022838-20080184 protein_coding
ENST00000526675 (NAV2-011) 20027554-20044995 processed_transcript
ENST00000527559 (NAV2-201) 19713335-20121598 protein_coding
ENST00000528008 (NAV2-014) 19931765-19933719 processed_transcript
ENST00000528923 (NAV2-013) 20114383-20118282 retained_intron
ENST00000530408 (NAV2-009) 20022845-20044991 protein_coding
ENST00000533746 (NAV2-004) 20104211-20118581 retained_intron
ENST00000533917 (NAV2-005) 20022556-20118603 protein_coding
ENST00000534229 (NAV2-007) 19777802-19880127 processed_transcript
ENST00000534299 (NAV2-010) 20027255-20044991 processed_transcript
ENST00000540292 (NAV2-202) 19713335-20121598 protein_coding
ENSG00000254453 (NAV2-AS2)
NAV2 antisense RNA 2 		ENST00000533767 (NAV2-AS2-001) 20043846-20049303 antisense
ENSG00000254542 (NAV2-AS3)
NAV2 antisense RNA 3 		ENST00000534036 (NAV2-AS3-001) 19978699-19981337 antisense
ENSG00000254622 (NAV2-AS4)
NAV2 antisense RNA 4 		ENST00000532874 (NAV2-AS4-001) 19510890-19519896 antisense
ENSG00000254894 (NAV2-AS1)
NAV2 antisense RNA 1 		ENST00000526642 (NAV2-AS1-001) 20119684-20120632 antisense
ENSG00000255043 (NAV2-AS5)
NAV2 antisense RNA 5 		ENST00000528726 (NAV2-AS5-001) 19502672-19507229 antisense
ENST00000530652 (NAV2-AS5-002) 19504891-19505900 antisense
ENSG00000255270 (NAV2-IT1)
NAV2 intronic transcript 1 (non-protein coding) 		ENST00000528204 (NAV2-IT1-001) 19380484-19385014 sense_intronic
ENSG00000264309 (MIR4694)
microRNA 4694 		ENST00000578534 (MIR4694-201) 19760004-19760083 miRNA
ENSG00000270607 (RP11-359E10.1)
 ENST00000603468 (RP11-359E10.1-001) 19710934-19712619 lincRNA
ENSG00000279266 (RP11-371I20.2)
 ENST00000623701 (RP11-371I20.2-001) 20131730-20135465 TEC
CIL_0004AW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052512-ENSMUSG00000030507 CGP 10090 7:48908716-49636849
GeneTranscriptPositionBiotype
ENSMUSG00000030507 (Dbx1)
developing brain homeobox 1 		ENSMUST00000032717 (Dbx1-001) 49631499-49636849 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AW_0001ENSDARG00000073688ENSDART00000113332ENSDARG00000086393ENSDART00000022441CIL_0004AW_0002ENSG00000109851ENST00000524983ENSG00000166833ENST00000349880ENST00000360655ENST00000396085ENST00000396087ENST00000525025ENST00000525322ENST00000526675ENST00000527559ENST00000528008ENST00000528923ENST00000530408ENST00000533746ENST00000533917ENST00000534229ENST00000534299ENST00000540292ENSG00000254453ENST00000533767ENSG00000254542ENST00000534036ENSG00000254622ENST00000532874ENSG00000254894ENST00000526642ENSG00000255043ENST00000528726ENST00000530652ENSG00000255270ENST00000528204ENSG00000264309ENST00000578534ENSG00000270607ENST00000603468ENSG00000279266ENST00000623701CIL_0004AW_0003ENSMUSG00000030507ENSMUST00000032717
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AW_0001ENSDARG00000073688ENSDART00000113332ENSDARG00000086393ENSDART00000022441CIL_0004AW_0002ENSG00000109851ENST00000524983ENSG00000166833ENST00000349880ENST00000360655ENST00000396085ENST00000396087ENST00000525322ENST00000527559ENST00000533917ENST00000534229ENSG00000254453ENST00000533767ENSG00000254542ENST00000534036ENSG00000254622ENST00000532874ENSG00000254894ENST00000526642ENSG00000255043ENST00000528726ENST00000530652ENSG00000255270ENST00000528204ENSG00000264309ENST00000578534ENSG00000270607ENST00000603468ENSG00000279266ENST00000623701CIL_0004AW_0003ENSMUSG00000030507ENSMUST00000032717
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000073688 ENSDART00000113332 N/A N/A N/A 4.125±1.43 N/A N/A 3.745±2.48 1.180±0.35 0.411±0.00 N/A 0.982±0.00 N/A N/A N/A
ENSDARG00000086393 ENSDART00000022441 N/A N/A N/A 0.389±0.09 N/A N/A 0.052±0.00 N/A N/A N/A 0.561±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109851 ENST00000524983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.163±0.06
ENSG00000166833 ENST00000349880 N/A 0.513±0.00 N/A N/A 0.612±0.00 N/A N/A N/A 0.490±0.00 0.706±0.00 N/A N/A N/A N/A
ENST00000360655 N/A 0.633±0.00 0.455±0.00 N/A N/A 1.113±0.00 N/A 0.584±0.00 N/A N/A N/A N/A 0.874±0.00 0.235±0.00
ENST00000396085 0.456±0.00 N/A N/A N/A N/A 0.518±0.00 0.444±0.19 N/A N/A 1.333±0.00 N/A 0.614±0.00 0.906±0.02 0.293±0.00
ENST00000396087 1.022±0.00 N/A N/A N/A N/A N/A 0.930±0.00 N/A N/A N/A 0.184±0.00 N/A N/A N/A
ENST00000525025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000525322 N/A N/A 1.887±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 N/A N/A
ENST00000526675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527559 N/A 0.598±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533917 N/A N/A N/A N/A 1.131±0.00 N/A N/A N/A 1.045±0.00 N/A N/A 0.642±0.00 2.141±0.00 N/A
ENST00000534229 N/A N/A N/A N/A N/A 5.928±0.00 N/A N/A N/A N/A 1.958±0.00 N/A N/A N/A
ENST00000534299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254453 ENST00000533767 N/A N/A N/A N/A N/A N/A 12.049±6.73 N/A N/A N/A N/A N/A N/A N/A
ENSG00000254542 ENST00000534036 0.021±0.00 N/A N/A 0.022±0.00 N/A 0.294±0.00 N/A 0.055±0.03 N/A 0.038±0.00 N/A N/A 0.069±0.00 N/A
ENSG00000254622 ENST00000532874 0.025±0.00 N/A 0.386±0.00 0.098±0.00 0.039±0.00 N/A N/A 0.162±0.06 0.284±0.00 0.307±0.00 0.572±0.00 0.375±0.00 0.360±0.25 0.072±0.03
ENSG00000254894 ENST00000526642 N/A 3.272±0.00 N/A N/A 7.047±0.00 4.355±0.00 N/A 8.394±0.00 N/A N/A 0.609±0.00 N/A N/A 2.577±0.00
ENSG00000255043 ENST00000528726 N/A 0.048±0.00 0.069±0.00 0.035±0.02 0.052±0.03 N/A 0.013±0.00 0.329±0.27 N/A N/A N/A 0.130±0.00 0.039±0.00 0.184±0.11
ENST00000530652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.03
ENSG00000255270 ENST00000528204 0.026±0.00 0.082±0.00 N/A 0.109±0.08 N/A 1.240±0.00 0.285±0.26 3.155±0.00 0.929±0.00 1.040±0.00 N/A N/A N/A N/A
ENSG00000264309 ENST00000578534 0.961±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270607 ENST00000603468 0.601±0.00 0.693±0.00 0.123±0.00 2.564±1.81 0.262±0.02 0.345±0.25 0.201±0.00 0.253±0.03 0.121±0.00 0.158±0.04 0.202±0.16 0.176±0.04 0.254±0.14 2.873±2.04
ENSG00000279266 ENST00000623701 0.017±0.00 0.162±0.00 N/A 0.054±0.00 0.072±0.00 0.010±0.00 0.020±0.00 0.069±0.02 0.032±0.01 0.070±0.00 N/A 0.028±0.01 0.017±0.00 0.406±0.27
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030507 ENSMUST00000032717 N/A N/A N/A 2.715±1.96 0.015±0.00 N/A N/A N/A 0.023±0.02 N/A 0.016±0.00 0.025±0.00 0.077±0.05 0.013±0.00

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