C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004AY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168938-ENSG00000061455 CGP 9606 5:123023250-123194266
GeneTranscriptPositionBiotype
ENSG00000061455 (PRDM6)
PR domain containing 6 		ENST00000407847 (PRDM6-001) 123089121-123194266 protein_coding
ENST00000427739 (PRDM6-004) 123173401-123180319 processed_transcript
ENST00000434521 (PRDM6-003) 123099745-123180285 nonsense_mediated_decay
ENST00000464424 (PRDM6-002) 123099746-123170935 processed_transcript
ENSG00000064652 (SNX24)
sorting nexin 24 		ENST00000261369 (SNX24-001) 122845449-123009212 protein_coding
ENST00000395451 (SNX24-002) 122845605-123008161 protein_coding
ENST00000502387 (SNX24-010) 122936733-123029354 processed_transcript
ENST00000503149 (SNX24-009) 122936734-123007774 nonsense_mediated_decay
ENST00000506996 (SNX24-004) 122845626-123002142 protein_coding
ENST00000507364 (SNX24-012) 122948596-123002145 processed_transcript
ENST00000510914 (SNX24-011) 122946055-123029350 processed_transcript
ENST00000511211 (SNX24-006) 122844232-122999984 processed_transcript
ENST00000511545 (SNX24-008) 122845663-123007782 nonsense_mediated_decay
ENST00000513613 (SNX24-007) 122843439-122998314 processed_transcript
ENST00000513881 (SNX24-003) 122845518-123008610 protein_coding
ENST00000515729 (SNX24-013) 122998269-123002142 processed_transcript
ENSG00000168938 (PPIC)
peptidylprolyl isomerase C (cyclophilin C) 		ENST00000306442 (PPIC-001) 123023250-123036741 protein_coding
ENST00000415659 (PPIC-002) 123028493-123036725 retained_intron
ENSG00000276047 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000579731 (Metazoa_SRP.1-351) 123070782-123071080 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004AY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024538-ENSMUSG00000069378 CGP 10090 18:53406341-53575907
GeneTranscriptPositionBiotype
ENSMUSG00000024538 (Ppic)
peptidylprolyl isomerase C 		ENSMUST00000025419 (Ppic-201) 53406341-53418007 protein_coding
ENSMUSG00000069378 (Prdm6)
PR domain containing 6 		ENSMUST00000091900 (Prdm6-201) 53464546-53575857 protein_coding
ENSMUST00000115398 (Prdm6-003) 53551594-53575857 protein_coding
ENSMUST00000115399 (Prdm6-002) 53472981-53575907 protein_coding
ENSMUST00000154557 (Prdm6-001) 53465051-53575857 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AY_0001ENSG00000061455ENST00000407847ENST00000427739ENST00000434521ENST00000464424ENSG00000064652ENST00000261369ENST00000395451ENST00000502387ENST00000503149ENST00000506996ENST00000507364ENST00000510914ENST00000511211ENST00000511545ENST00000513613ENST00000513881ENST00000515729ENSG00000168938ENST00000306442ENST00000415659ENSG00000276047ENST00000579731CIL_0004AY_0002ENSMUSG00000024538ENSMUST00000025419ENSMUSG00000069378ENSMUST00000091900ENSMUST00000115398ENSMUST00000115399ENSMUST00000154557
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AY_0001ENSG00000061455ENST00000407847ENST00000434521ENST00000464424ENSG00000064652ENST00000261369ENST00000506996ENST00000513881ENST00000515729ENSG00000168938ENST00000306442ENST00000415659ENSG00000276047ENST00000579731CIL_0004AY_0002ENSMUSG00000024538ENSMUST00000025419ENSMUSG00000069378ENSMUST00000091900ENSMUST00000115398ENSMUST00000115399ENSMUST00000154557
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000061455 ENST00000407847 N/A 0.148±0.00 N/A 0.060±0.04 0.221±0.00 1.972±0.00 0.051±0.00 0.041±0.04 1.053±1.05 1.053±0.30 0.009±0.00 0.537±0.35 0.859±0.08 0.431±0.00
ENST00000427739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434521 N/A N/A N/A 0.101±0.00 N/A N/A 0.178±0.00 N/A 0.193±0.00 4.916±0.00 0.074±0.00 N/A N/A N/A
ENST00000464424 0.255±0.00 N/A 0.768±0.00 N/A N/A N/A N/A N/A N/A N/A 0.339±0.00 N/A N/A N/A
ENSG00000064652 ENST00000261369 N/A N/A 0.533±0.00 3.904±2.61 0.741±0.00 2.483±0.00 2.213±0.00 6.925±0.00 1.413±0.53 3.059±1.64 1.322±0.00 2.166±0.26 9.961±2.19 2.380±0.29
ENST00000395451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502387 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506996 N/A N/A N/A N/A N/A N/A N/A 2.872±0.00 N/A N/A N/A N/A N/A N/A
ENST00000507364 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511545 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513881 N/A N/A 1.317±0.00 0.992±0.00 0.683±0.00 N/A 0.635±0.00 N/A 1.235±0.00 N/A 1.331±0.00 N/A N/A 2.584±0.00
ENST00000515729 N/A N/A N/A N/A N/A 6.107±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168938 ENST00000306442 16.947±0.00 18.060±0.00 1.246±0.00 0.654±0.00 10.463±6.51 3.528±0.00 7.674±4.78 3.249±0.00 6.574±0.69 7.519±3.99 5.545±1.16 9.602±7.00 57.740±27.14 11.559±4.60
ENST00000415659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.411±0.00 N/A N/A N/A
ENSG00000276047 ENST00000579731 0.203±0.00 0.495±0.00 N/A 0.486±0.00 0.375±0.00 0.339±0.00 0.350±0.00 0.374±0.00 0.067±0.00 0.361±0.00 N/A 1.522±0.00 N/A 0.265±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024538 ENSMUST00000025419 89.960±1.43 13.193±2.61 82.620±12.51 9.464±6.21 34.017±1.78 14.844±2.22 12.386±2.44 77.790±10.41 10.187±8.67 68.027±3.29 9.723±0.80 58.937±6.16 46.486±6.03 1.631±0.81
ENSMUSG00000069378 ENSMUST00000091900 0.107±0.01 0.160±0.04 3.327±0.42 0.261±0.21 1.299±0.41 1.264±0.26 0.338±0.04 0.117±0.06 0.073±0.05 4.133±2.32 N/A 2.796±1.22 0.966±0.46 0.043±0.00
ENSMUST00000115398 0.083±0.00 0.107±0.02 9.911±0.00 0.038±0.00 0.761±0.00 N/A 0.174±0.00 0.066±0.00 0.064±0.04 5.454±0.15 0.043±0.02 1.249±0.74 0.920±0.22 0.290±0.12
ENSMUST00000115399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 0.683±0.37 0.257±0.00 N/A
ENSMUST00000154557 0.068±0.01 N/A 3.789±0.00 0.375±0.00 0.415±0.00 0.380±0.00 0.196±0.02 0.014±0.00 0.071±0.02 N/A N/A 0.825±0.40 0.583±0.29 0.107±0.01

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