C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004C2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014008-ENSDARG00000012244 CGP 7955 9:44625558-44953369
GeneTranscriptPositionBiotype
ENSDARG00000012244 (ube2e3)
ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast) 		ENSDART00000020550 (ube2e3-001) 44870945-44953369 protein_coding
ENSDART00000136628 (ube2e3-002) 44871186-44874507 retained_intron
ENSDART00000138549 (ube2e3-003) 44873919-44952835 retained_intron
ENSDARG00000014008 (cwc22)
CWC22 spliceosome-associated protein homolog (S. cerevisiae) 		ENSDART00000023684 (cwc22-001) 44625558-44717304 protein_coding
ENSDART00000136017 (cwc22-002) 44695472-44700692 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0004C2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163510-ENSG00000170035 CGP 9606 2:179944876-181076585
GeneTranscriptPositionBiotype
ENSG00000163510 (CWC22)
CWC22 spliceosome-associated protein 		ENST00000404136 (CWC22-002) 179945621-180007113 protein_coding
ENST00000410053 (CWC22-001) 179944876-180007053 protein_coding
ENSG00000170035 (UBE2E3)
ubiquitin-conjugating enzyme E2E 3 		ENST00000392415 (UBE2E3-201) 180980385-181063424 protein_coding
ENST00000410062 (UBE2E3-001) 180980606-181063441 protein_coding
ENST00000602291 (UBE2E3-012) 180980391-181062849 protein_coding
ENST00000602303 (UBE2E3-007) 180967248-181060812 protein_coding
ENST00000602475 (UBE2E3-005) 180980807-180990046 protein_coding
ENST00000602479 (UBE2E3-004) 180980376-181060810 protein_coding
ENST00000602499 (UBE2E3-006) 180981036-181057816 protein_coding
ENST00000602632 (UBE2E3-008) 180982023-180990005 protein_coding
ENST00000602710 (UBE2E3-002) 180981124-181063441 protein_coding
ENST00000602762 (UBE2E3-010) 180982018-181076232 processed_transcript
ENST00000602837 (UBE2E3-013) 181057691-181076478 processed_transcript
ENST00000602888 (UBE2E3-011) 180984006-181062920 retained_intron
ENST00000602959 (UBE2E3-003) 180980373-181063029 protein_coding
ENST00000602970 (UBE2E3-009) 181062890-181076585 processed_transcript
ENSG00000225258 (AC009478.1)
 ENST00000429816 (AC009478.1-001) 180571712-180692454 lincRNA
ENSG00000226564 (FTH1P20)
ferritin, heavy polypeptide 1 pseudogene 20 		ENST00000434913 (FTH1P20-001) 180872867-180873414 processed_pseudogene
ENSG00000236153 (AC104076.3)
 ENST00000428080 (AC104076.3-001) 180979427-180980090 antisense
ENSG00000236667 (AC104076.2)
 ENST00000448912 (AC104076.2-001) 180938830-180939298 processed_pseudogene
ENSG00000264976 (AC009478.2)
 ENST00000579068 (AC009478.2-201) 180617118-180617206 miRNA
ENSG00000279559 (RP11-739A13.1)
 ENST00000624183 (RP11-739A13.1-001) 180801227-180801533 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0004C2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027014-ENSMUSG00000027011 CGP 10090 2:77881159-78921293
GeneTranscriptPositionBiotype
ENSMUSG00000027011 (Ube2e3)
ubiquitin-conjugating enzyme E2E 3 		ENSMUST00000028398 (Ube2e3-001) 78869047-78921293 protein_coding
ENSMUST00000121433 (Ube2e3-007) 78869678-78920297 protein_coding
ENSMUST00000124120 (Ube2e3-006) 78868124-78870607 protein_coding
ENSMUST00000130914 (Ube2e3-004) 78868238-78913739 protein_coding
ENSMUST00000138864 (Ube2e3-003) 78869334-78872759 retained_intron
ENSMUST00000153266 (Ube2e3-005) 78918393-78920052 retained_intron
ENSMUST00000153614 (Ube2e3-002) 78869240-78914551 retained_intron
ENSMUSG00000027014 (Cwc22)
CWC22 spliceosome-associated protein homolog (S. cerevisiae) 		ENSMUST00000065889 (Cwc22-001) 77895653-77946375 protein_coding
ENSMUST00000111818 (Cwc22-005) 77895768-77946353 protein_coding
ENSMUST00000111819 (Cwc22-007) 77895766-77946183 protein_coding
ENSMUST00000111821 (Cwc22-201) 77895653-77946353 protein_coding
ENSMUST00000111824 (Cwc22-012) 77881159-77946180 protein_coding
ENSMUST00000127289 (Cwc22-006) 77929287-77945938 protein_coding
ENSMUST00000127351 (Cwc22-002) 77926043-77946183 processed_transcript
ENSMUST00000128963 (Cwc22-008) 77929373-77946189 protein_coding
ENSMUST00000137494 (Cwc22-011) 77895766-77924528 processed_transcript
ENSMUST00000139842 (Cwc22-004) 77906269-77908167 processed_transcript
ENSMUST00000144727 (Cwc22-003) 77916427-77946199 processed_transcript
ENSMUST00000149012 (Cwc22-010) 77929429-77936669 processed_transcript
ENSMUST00000156863 (Cwc22-009) 77930775-77936727 processed_transcript
ENSMUSG00000054510 (Gm14461)
predicted gene 14461 		ENSMUST00000067618 (Gm14461-001) 78237547-78302230 lincRNA
ENSMUST00000166653 (Gm14461-201) 78301692-78302000 lincRNA
ENSMUSG00000081719 (Gm13726)
predicted gene 13726 		ENSMUST00000121278 (Gm13726-001) 77962269-77963062 processed_pseudogene
ENSMUSG00000082046 (Gm14464)
predicted gene 14464 		ENSMUST00000119658 (Gm14464-001) 78597669-78598922 processed_pseudogene
ENSMUSG00000082701 (Gm14460)
predicted gene 14460 		ENSMUST00000121511 (Gm14460-001) 78512698-78513336 processed_pseudogene
ENSMUSG00000082731 (Gm14467)
predicted gene 14467 		ENSMUST00000117195 (Gm14467-001) 78720437-78720709 processed_pseudogene
ENSMUSG00000084101 (Gm17014)
predicted gene 17014 		ENSMUST00000120765 (Gm17014-001) 78845286-78845453 processed_pseudogene
ENSMUSG00000085431 (4930440I19Rik)
RIKEN cDNA 4930440I19 gene 		ENSMUST00000144728 (4930440I19Rik-001) 78051223-78194430 lincRNA
ENSMUST00000145972 (4930440I19Rik-002) 78051177-78069406 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004C2_0001ENSDARG00000012244ENSDART00000020550ENSDART00000136628ENSDART00000138549ENSDARG00000014008ENSDART00000023684ENSDART00000136017CIL_0004C2_0002ENSG00000163510ENST00000404136ENST00000410053ENSG00000170035ENST00000392415ENST00000410062ENST00000602291ENST00000602303ENST00000602475ENST00000602479ENST00000602499ENST00000602632ENST00000602710ENST00000602762ENST00000602837ENST00000602888ENST00000602959ENST00000602970ENSG00000225258ENST00000429816ENSG00000226564ENST00000434913ENSG00000236153ENST00000428080ENSG00000236667ENST00000448912ENSG00000264976ENST00000579068ENSG00000279559ENST00000624183CIL_0004C2_0003ENSMUSG00000027011ENSMUST00000028398ENSMUST00000121433ENSMUST00000124120ENSMUST00000130914ENSMUST00000138864ENSMUST00000153266ENSMUST00000153614ENSMUSG00000027014ENSMUST00000065889ENSMUST00000111818ENSMUST00000111819ENSMUST00000111821ENSMUST00000111824ENSMUST00000127289ENSMUST00000127351ENSMUST00000128963ENSMUST00000137494ENSMUST00000139842ENSMUST00000144727ENSMUST00000149012ENSMUST00000156863ENSMUSG00000054510ENSMUST00000067618ENSMUST00000166653ENSMUSG00000081719ENSMUST00000121278ENSMUSG00000082046ENSMUST00000119658ENSMUSG00000082701ENSMUST00000121511ENSMUSG00000082731ENSMUST00000117195ENSMUSG00000084101ENSMUST00000120765ENSMUSG00000085431ENSMUST00000144728ENSMUST00000145972
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004C2_0001ENSDARG00000012244ENSDART00000020550ENSDART00000138549ENSDARG00000014008ENSDART00000023684ENSDART00000136017CIL_0004C2_0002ENSG00000163510ENST00000404136ENST00000410053ENSG00000170035ENST00000392415ENST00000410062ENST00000602710ENST00000602888ENST00000602959ENSG00000225258ENST00000429816ENSG00000226564ENST00000434913ENSG00000236153ENST00000428080ENSG00000236667ENST00000448912ENSG00000264976ENST00000579068ENSG00000279559ENST00000624183CIL_0004C2_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012244 ENSDART00000020550 N/A N/A N/A 55.070±12.99 N/A N/A 76.297±40.79 45.274±18.87 1.756±0.00 N/A 14.841±0.00 N/A N/A N/A
ENSDART00000136628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138549 N/A N/A N/A 31.713±2.45 N/A N/A 61.468±5.43 10.649±0.00 0.987±0.00 N/A 8.347±0.00 N/A N/A N/A
ENSDARG00000014008 ENSDART00000023684 N/A N/A N/A 7.961±2.14 N/A N/A 4.940±1.20 16.111±0.00 1.733±0.00 N/A 2.431±0.00 N/A N/A N/A
ENSDART00000136017 N/A N/A N/A N/A N/A N/A 0.360±0.29 0.536±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163510 ENST00000404136 N/A N/A 2.116±0.00 1.352±0.00 N/A 0.566±0.00 0.788±0.00 1.525±0.00 3.566±0.00 2.074±0.00 1.056±0.00 1.310±0.00 N/A 1.536±0.00
ENST00000410053 0.559±0.00 2.778±0.00 N/A 4.132±0.00 1.855±1.25 1.558±0.00 2.608±0.00 N/A 0.717±0.00 0.594±0.00 N/A 7.758±2.25 3.705±0.00 3.821±0.29
ENSG00000170035 ENST00000392415 5.449±0.00 11.454±0.00 1.404±0.00 16.991±0.00 5.812±3.98 8.659±0.00 4.315±0.00 18.749±0.00 2.653±0.00 3.819±0.00 6.181±0.00 16.465±7.30 16.679±0.73 28.001±0.00
ENST00000410062 13.831±0.00 5.926±0.00 N/A 12.933±3.32 9.466±8.01 7.352±4.52 7.078±5.68 7.493±4.85 6.183±3.20 13.853±0.00 15.126±2.12 8.563±3.29 6.824±0.75 19.041±1.69
ENST00000602291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602710 N/A N/A N/A N/A N/A 1.186±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602837 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602888 N/A N/A 8.194±0.00 16.343±0.00 5.501±0.00 N/A 2.162±0.00 N/A 2.805±0.00 2.806±0.00 N/A 18.672±12.68 24.604±0.00 59.601±0.00
ENST00000602959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.744±0.00 24.750±0.00 23.914±0.00
ENST00000602970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225258 ENST00000429816 N/A 0.140±0.00 1.065±0.00 0.029±0.00 0.028±0.00 0.230±0.00 N/A 0.084±0.00 N/A N/A 0.471±0.00 N/A 0.055±0.00 0.495±0.27
ENSG00000226564 ENST00000434913 1.195±0.00 0.462±0.00 N/A 0.355±0.20 0.508±0.00 0.411±0.00 0.279±0.00 0.512±0.41 0.246±0.00 1.191±0.00 0.704±0.52 0.667±0.99 0.104±0.02 0.476±0.25
ENSG00000236153 ENST00000428080 0.075±0.00 N/A N/A N/A N/A 0.148±0.00 0.219±0.00 0.318±0.00 N/A 0.073±0.00 N/A 1.184±0.00 0.234±0.00 0.621±0.33
ENSG00000236667 ENST00000448912 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264976 ENST00000579068 N/A 0.283±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000279559 ENST00000624183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.087±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027011 ENSMUST00000028398 11.453±4.68 66.251±23.85 11.745±0.99 35.539±21.54 21.202±15.04 25.151±2.75 7.433±1.82 17.638±4.70 20.847±10.39 25.695±7.25 4.590±0.71 40.083±18.90 17.554±4.98 5.233±2.09
ENSMUST00000121433 5.365±1.79 N/A 3.433±0.00 19.664±0.00 8.345±5.89 N/A 4.602±0.65 3.378±0.00 N/A N/A 5.199±0.48 16.719±3.07 21.372±4.49 5.178±0.84
ENSMUST00000124120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153614 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000027014 ENSMUST00000065889 0.620±0.09 0.344±0.01 N/A N/A N/A 1.382±0.00 0.523±0.18 0.657±0.27 0.799±0.09 1.515±0.00 0.648±0.06 0.786±0.17 N/A N/A
ENSMUST00000111818 N/A 0.155±0.00 N/A N/A 0.298±0.00 1.359±0.00 N/A 0.245±0.00 1.341±0.90 0.759±0.00 1.139±0.00 0.699±0.08 N/A 0.446±0.00
ENSMUST00000111819 0.804±0.19 N/A 4.122±0.46 3.356±0.10 0.668±0.22 0.975±0.07 0.497±0.19 0.654±0.19 3.387±2.59 0.582±0.08 1.881±0.23 3.080±2.91 28.170±37.91 0.768±0.06
ENSMUST00000111821 0.919±0.01 0.300±0.04 2.467±0.52 1.959±0.10 0.634±0.18 0.655±0.17 N/A 0.580±0.11 3.156±1.42 1.232±0.42 N/A 0.598±0.19 3.210±0.70 0.510±0.33
ENSMUST00000111824 0.744±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.636±0.00 N/A 0.385±0.00
ENSMUST00000127289 N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.562±0.00 N/A N/A
ENSMUST00000127351 N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A N/A N/A N/A 0.512±0.14 N/A N/A
ENSMUST00000128963 N/A N/A N/A N/A N/A N/A N/A N/A 1.106±0.00 N/A N/A 1.865±1.03 20.808±0.00 1.287±0.00
ENSMUST00000137494 N/A 0.635±0.28 2.483±0.49 17.151±21.10 0.514±0.12 N/A N/A 0.753±0.09 2.013±1.15 1.024±0.00 0.809±0.19 4.218±5.82 18.975±16.85 3.984±4.91
ENSMUST00000139842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144727 N/A N/A N/A 24.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 99.410±24.96 8.076±0.00
ENSMUST00000149012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156863 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054510 ENSMUST00000067618 0.033±0.01 N/A 0.004±0.00 0.027±0.02 0.078±0.05 0.072±0.00 0.021±0.00 0.024±0.00 0.017±0.02 N/A 0.020±0.01 0.078±0.06 0.020±0.01 0.116±0.07
ENSMUST00000166653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.02 N/A
ENSMUSG00000081719 ENSMUST00000121278 0.109±0.00 N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.05 0.085±0.00
ENSMUSG00000082046 ENSMUST00000119658 N/A N/A N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A 0.044±0.02 0.017±0.01 N/A
ENSMUSG00000082701 ENSMUST00000121511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.238±0.00
ENSMUSG00000082731 ENSMUST00000117195 N/A N/A N/A N/A N/A N/A N/A N/A 7.544±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000084101 ENSMUST00000120765 N/A N/A N/A N/A N/A N/A N/A N/A 1.167±0.09 N/A N/A N/A 2.223±0.93 N/A
ENSMUSG00000085431 ENSMUST00000144728 N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A 0.089±0.00 2.409±0.53
ENSMUST00000145972 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A 0.030±0.00 6.574±1.49

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