C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004CF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189403-ENSG00000132952 CGP 9606 13:30456704-30660770
GeneTranscriptPositionBiotype
ENSG00000132952 (USPL1)
ubiquitin specific peptidase like 1 		ENST00000255304 (USPL1-001) 30617783-30659549 protein_coding
ENST00000465952 (USPL1-002) 30617693-30631474 processed_transcript
ENST00000614860 (USPL1-003) 30617937-30660770 protein_coding
ENSG00000189403 (HMGB1)
high mobility group box 1 		ENST00000326004 (HMGB1-003) 30461496-30465938 protein_coding
ENST00000339872 (HMGB1-001) 30459850-30464310 protein_coding
ENST00000341423 (HMGB1-004) 30456704-30465965 protein_coding
ENST00000399489 (HMGB1-009) 30460895-30464247 protein_coding
ENST00000399494 (HMGB1-011) 30460907-30465242 protein_coding
ENST00000405805 (HMGB1-012) 30458747-30617597 protein_coding
ENST00000468384 (HMGB1-007) 30463311-30465914 processed_transcript
ENST00000490788 (HMGB1-008) 30462346-30463264 processed_transcript
ENSG00000213411 (RBM22P2)
RNA binding motif protein 22 pseudogene 2 		ENST00000393978 (RBM22P2-001) 30539597-30543461 processed_pseudogene
ENSG00000224117 (PTPN2P2)
protein tyrosine phosphatase, non-receptor type 2 pseudogene 2 		ENST00000433704 (PTPN2P2-001) 30553670-30554693 processed_pseudogene
ENSG00000232489 (MFAP1P1)
microfibrillar-associated protein 1 pseudogene 1 		ENST00000442257 (MFAP1P1-001) 30541643-30542897 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004CF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066551-ENSMUSG00000041264 CGP 10090 5:149046702-149215434
GeneTranscriptPositionBiotype
ENSMUSG00000024437 (Gm8615)
predicted pseudogene 8615 		ENSMUST00000025307 (Gm8615-201) 149155446-149156081 processed_pseudogene
ENSMUSG00000041264 (Uspl1)
ubiquitin specific peptidase like 1 		ENSMUST00000050472 (Uspl1-001) 149184560-149215434 protein_coding
ENSMUST00000100410 (Uspl1-003) 149184666-149215431 protein_coding
ENSMUST00000117878 (Uspl1-007) 149184716-149215433 protein_coding
ENSMUST00000119685 (Uspl1-004) 149184667-149215430 protein_coding
ENSMUST00000121416 (Uspl1-006) 149184350-149215428 protein_coding
ENSMUST00000122160 (Uspl1-002) 149184663-149215430 protein_coding
ENSMUST00000126168 (Uspl1-005) 149184678-149215430 nonsense_mediated_decay
ENSMUST00000139474 (Uspl1-009) 149184678-149194327 protein_coding
ENSMUST00000149896 (Uspl1-010) 149184781-149194094 processed_transcript
ENSMUST00000150921 (Uspl1-008) 149191336-149215434 retained_intron
ENSMUSG00000066551 (Hmgb1)
high mobility group box 1 		ENSMUST00000085546 (Hmgb1-001) 149046702-149053040 protein_coding
ENSMUST00000093196 (Hmgb1-002) 149048645-149051616 protein_coding
ENSMUST00000110505 (Hmgb1-003) 149048228-149051300 protein_coding
ENSMUST00000123645 (Hmgb1-005) 149050373-149052981 retained_intron
ENSMUST00000125605 (Hmgb1-008) 149050315-149053513 protein_coding
ENSMUST00000133667 (Hmgb1-004) 149050068-149053016 retained_intron
ENSMUST00000138553 (Hmgb1-007) 149049824-149052377 protein_coding
ENSMUST00000139443 (Hmgb1-006) 149049401-149053011 retained_intron
ENSMUST00000155086 (Hmgb1-009) 149049153-149050447 retained_intron
ENSMUSG00000097191 (5730422E09Rik)
RIKEN cDNA 5730422E09 gene 		ENSMUST00000180733 (5730422E09Rik-201) 149119565-149184063 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CF_0001ENSG00000132952ENST00000255304ENST00000465952ENST00000614860ENSG00000189403ENST00000326004ENST00000339872ENST00000341423ENST00000399489ENST00000399494ENST00000405805ENST00000468384ENST00000490788ENSG00000213411ENST00000393978ENSG00000224117ENST00000433704ENSG00000232489ENST00000442257CIL_0004CF_0002ENSMUSG00000024437ENSMUST00000025307ENSMUSG00000041264ENSMUST00000050472ENSMUST00000100410ENSMUST00000117878ENSMUST00000119685ENSMUST00000121416ENSMUST00000122160ENSMUST00000126168ENSMUST00000139474ENSMUST00000149896ENSMUST00000150921ENSMUSG00000066551ENSMUST00000085546ENSMUST00000093196ENSMUST00000110505ENSMUST00000123645ENSMUST00000125605ENSMUST00000133667ENSMUST00000138553ENSMUST00000139443ENSMUST00000155086ENSMUSG00000097191ENSMUST00000180733
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004CF_0001ENSG00000132952ENST00000255304ENST00000465952ENST00000614860ENSG00000189403ENST00000326004ENST00000339872ENST00000341423ENST00000399489ENST00000399494ENST00000405805ENST00000468384ENSG00000213411ENST00000393978ENSG00000224117ENST00000433704ENSG00000232489ENST00000442257CIL_0004CF_0002ENSMUSG00000024437ENSMUST00000025307ENSMUSG00000041264ENSMUST00000050472ENSMUST00000100410ENSMUST00000117878ENSMUST00000119685ENSMUST00000121416ENSMUST00000122160ENSMUST00000126168ENSMUST00000139474ENSMUST00000150921ENSMUSG00000066551ENSMUST00000085546ENSMUST00000093196ENSMUST00000110505ENSMUST00000133667ENSMUST00000138553ENSMUSG00000097191ENSMUST00000180733
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132952 ENST00000255304 2.880±0.00 3.885±0.00 0.686±0.00 1.932±0.54 2.339±0.21 2.040±0.29 1.322±0.50 1.972±0.00 1.182±0.64 2.359±1.36 1.347±0.04 3.775±0.26 1.320±0.53 5.716±0.34
ENST00000465952 N/A N/A 0.991±0.00 3.463±0.00 4.930±0.00 2.873±0.00 1.405±0.00 2.540±0.00 6.628±0.00 6.472±0.00 1.013±0.00 7.670±0.00 N/A N/A
ENST00000614860 N/A 1.439±0.00 N/A 0.793±0.29 0.314±0.00 1.086±0.00 0.502±0.00 1.856±0.00 0.295±0.00 0.412±0.00 0.467±0.00 2.336±0.70 0.379±0.05 2.066±0.93
ENSG00000189403 ENST00000326004 35.635±0.00 N/A 15.953±0.00 32.139±0.00 44.253±0.00 42.145±8.27 2.961±0.00 43.133±0.00 40.134±0.00 34.822±0.00 12.561±0.00 84.285±24.50 28.551±8.96 27.046±12.90
ENST00000339872 30.004±0.00 37.161±0.00 N/A 16.684±12.79 20.276±12.07 47.682±0.00 10.755±9.24 23.703±15.15 11.489±6.26 28.130±22.57 7.900±6.30 27.121±20.89 17.824±7.73 17.720±15.78
ENST00000341423 6.360±0.00 10.057±0.00 N/A 5.479±0.00 3.395±1.22 N/A 1.732±0.00 4.826±0.00 2.533±0.00 N/A 1.773±0.00 2.721±0.00 N/A 3.251±0.00
ENST00000399489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.900±0.00
ENST00000399494 N/A N/A N/A 25.890±0.00 N/A 29.699±0.00 N/A N/A N/A N/A N/A 39.919±21.32 21.621±9.46 14.544±11.59
ENST00000405805 6.188±0.00 N/A 1.619±0.00 6.254±0.00 5.494±0.00 N/A 1.808±0.92 2.920±0.00 4.426±0.00 6.024±0.94 2.368±1.37 5.851±1.32 N/A 1.491±0.00
ENST00000468384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 149.717±0.00 48.529±0.00 12.604±0.00
ENST00000490788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213411 ENST00000393978 0.064±0.00 0.507±0.00 0.114±0.00 0.232±0.09 0.313±0.10 0.157±0.10 0.082±0.06 0.322±0.06 0.129±0.00 0.071±0.00 0.044±0.00 0.421±0.22 0.055±0.01 0.265±0.04
ENSG00000224117 ENST00000433704 0.033±0.00 0.045±0.00 N/A 0.249±0.00 0.543±0.00 0.074±0.00 0.046±0.00 N/A N/A N/A N/A 0.052±0.02 N/A N/A
ENSG00000232489 ENST00000442257 0.040±0.00 0.391±0.00 0.071±0.00 0.273±0.07 0.610±0.00 0.043±0.01 0.105±0.01 0.319±0.00 0.066±0.02 0.035±0.00 N/A 0.336±0.36 0.080±0.04 0.338±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024437 ENSMUST00000025307 0.059±0.00 0.112±0.00 0.088±0.01 0.657±0.58 0.124±0.00 N/A 0.176±0.04 0.106±0.04 0.109±0.07 0.160±0.00 0.101±0.00 0.265±0.15 4.202±4.28 0.190±0.19
ENSMUSG00000041264 ENSMUST00000050472 0.925±0.44 1.070±0.37 N/A 1.730±0.00 N/A 1.081±0.11 N/A 0.731±0.00 1.192±0.45 0.893±0.20 1.153±0.00 2.061±0.23 3.392±0.81 1.825±0.00
ENSMUST00000100410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.736±0.09 3.362±0.00
ENSMUST00000117878 1.766±0.00 N/A 2.871±0.22 2.587±0.00 2.962±0.00 1.356±0.03 1.204±0.37 1.795±0.24 1.628±0.75 1.304±0.13 3.159±0.58 2.905±0.98 3.745±1.34 2.704±0.48
ENSMUST00000119685 3.512±1.96 1.839±1.42 N/A 2.028±0.65 3.362±1.02 3.015±0.86 1.253±0.31 1.714±0.84 1.277±0.44 1.622±0.78 N/A 3.086±1.08 2.304±0.60 1.704±0.34
ENSMUST00000121416 N/A N/A 3.012±0.09 4.634±0.70 1.436±0.00 N/A 0.996±0.19 N/A 1.985±0.50 0.580±0.00 4.547±0.82 1.136±0.24 3.147±0.09 4.888±0.64
ENSMUST00000122160 N/A N/A N/A N/A 1.226±0.00 N/A N/A 1.154±0.50 0.753±0.25 0.915±0.05 N/A 1.931±0.69 1.786±0.48 1.405±0.06
ENSMUST00000126168 0.551±0.00 N/A 1.467±0.01 2.847±0.51 2.259±0.80 N/A 1.088±0.53 2.013±0.62 1.457±0.50 0.900±0.00 1.161±0.11 1.603±0.23 N/A 1.763±0.00
ENSMUST00000139474 N/A 3.327±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150921 0.823±0.24 0.715±0.00 N/A N/A 0.539±0.00 0.646±0.22 N/A N/A 0.555±0.00 N/A N/A 1.241±0.57 N/A N/A
ENSMUSG00000066551 ENSMUST00000085546 14.521±5.24 4.362±1.41 22.657±10.21 28.403±19.52 13.205±2.80 11.696±2.24 11.779±2.25 22.391±5.26 36.485±24.90 26.854±3.08 11.162±4.84 15.846±6.56 22.414±15.82 5.063±0.94
ENSMUST00000093196 N/A N/A 31.658±6.67 38.022±0.00 N/A N/A N/A N/A 54.916±2.80 N/A N/A 78.038±38.35 55.989±30.73 38.198±0.00
ENSMUST00000110505 4.592±0.46 N/A 13.370±2.51 40.525±0.51 4.237±1.35 N/A 3.588±0.05 N/A 42.354±9.94 N/A 22.129±0.00 15.413±14.45 13.762±1.78 3.990±0.29
ENSMUST00000123645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133667 12.337±0.06 5.830±1.31 50.456±0.00 45.608±0.00 N/A 19.282±5.55 9.123±0.00 17.101±2.39 95.557±0.00 21.691±1.84 N/A 13.069±3.23 70.477±3.15 9.020±0.73
ENSMUST00000138553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 139.411±70.11 N/A
ENSMUST00000139443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097191 ENSMUST00000180733 0.035±0.02 0.048±0.00 N/A 0.071±0.02 0.045±0.00 0.074±0.00 0.027±0.01 0.067±0.04 0.057±0.02 0.037±0.01 0.034±0.01 0.084±0.03 0.128±0.06 0.176±0.09

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