C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004D6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075249-ENSDARG00000018687 CGP 7955 3:21493719-21595552
GeneTranscriptPositionBiotype
ENSDARG00000018687 (itga2b)
integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B) 		ENSDART00000016562 (itga2b-001) 21563570-21595552 protein_coding
ENSDARG00000075249 (fam171a2)
family with sequence similarity 171, member A2 		ENSDART00000114906 (fam171a2-001) 21493719-21561539 protein_coding
ENSDARG00000097315 (si:ch73-54a8.2)
si:ch73-54a8.2 		ENSDART00000154240 (si:ch73-54a8.2-002) 21592118-21809728 antisense
ENSDART00000157112 (si:ch73-54a8.2-001) 21592118-21607992 antisense

Danio rerio Ensembl (Zv9)

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CIL_0004D6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161682-ENSG00000005961 CGP 9606 17:44353215-44389505
GeneTranscriptPositionBiotype
ENSG00000005961 (ITGA2B)
integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) 		ENST00000262407 (ITGA2B-001) 44372183-44389505 protein_coding
ENST00000587295 (ITGA2B-011) 44372181-44376184 protein_coding
ENST00000588098 (ITGA2B-012) 44372180-44374695 protein_coding
ENST00000589645 (ITGA2B-009) 44383764-44385363 retained_intron
ENST00000591990 (ITGA2B-007) 44383683-44385195 retained_intron
ENST00000592075 (ITGA2B-008) 44383938-44385202 retained_intron
ENST00000592226 (ITGA2B-004) 44380057-44385202 retained_intron
ENST00000592253 (ITGA2B-006) 44383938-44385341 retained_intron
ENST00000592462 (ITGA2B-003) 44373924-44383497 retained_intron
ENST00000592944 (ITGA2B-005) 44384321-44385809 retained_intron
ENSG00000161682 (FAM171A2)
family with sequence similarity 171, member A2 		ENST00000293443 (FAM171A2-001) 44353215-44363875 protein_coding
ENST00000588067 (FAM171A2-002) 44356306-44363834 nonsense_mediated_decay
ENST00000589407 (FAM171A2-004) 44355967-44363812 nonsense_mediated_decay
ENST00000592560 (FAM171A2-003) 44359346-44363800 retained_intron
ENSG00000267634 (RPL7L1P5)
ribosomal protein L7-like 1 pseudogene 5 		ENST00000590816 (RPL7L1P5-001) 44365014-44365751 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0004D6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034685-ENSMUSG00000034664 CGP 10090 11:102436981-102470122
GeneTranscriptPositionBiotype
ENSMUSG00000034664 (Itga2b)
integrin alpha 2b 		ENSMUST00000103086 (Itga2b-001) 102453297-102469883 protein_coding
ENSMUST00000124767 (Itga2b-005) 102461212-102461937 processed_transcript
ENSMUST00000128752 (Itga2b-010) 102455839-102457320 processed_transcript
ENSMUST00000130433 (Itga2b-006) 102457510-102460835 processed_transcript
ENSMUST00000130757 (Itga2b-003) 102467800-102470122 processed_transcript
ENSMUST00000131247 (Itga2b-008) 102457200-102458359 processed_transcript
ENSMUST00000134735 (Itga2b-009) 102453304-102456190 processed_transcript
ENSMUST00000145925 (Itga2b-004) 102466287-102466955 processed_transcript
ENSMUST00000149519 (Itga2b-002) 102456472-102467199 processed_transcript
ENSMUST00000151625 (Itga2b-007) 102455897-102458565 processed_transcript
ENSMUSG00000034685 (Fam171a2)
family with sequence similarity 171, member A2 		ENSMUST00000049057 (Fam171a2-001) 102436981-102447682 protein_coding
ENSMUST00000145190 (Fam171a2-002) 102438748-102439777 processed_transcript
ENSMUST00000152015 (Fam171a2-003) 102440233-102447594 processed_transcript
ENSMUSG00000034708 (Grn)
granulin 		ENSMUST00000049460 (Grn-001) 102430315-102436809 protein_coding
ENSMUST00000123500 (Grn-009) 102434718-102435944 retained_intron
ENSMUST00000125819 (Grn-010) 102435285-102436573 protein_coding
ENSMUST00000127530 (Grn-011) 102435306-102436064 retained_intron
ENSMUST00000129997 (Grn-002) 102430518-102434446 protein_coding
ENSMUST00000135517 (Grn-003) 102432785-102434257 retained_intron
ENSMUST00000138451 (Grn-006) 102434102-102434891 retained_intron
ENSMUST00000148580 (Grn-004) 102433932-102434593 retained_intron
ENSMUST00000176953 (Grn-007) 102434099-102435262 retained_intron
ENSMUST00000177428 (Grn-008) 102435416-102437048 protein_coding
ENSMUSG00000092641 (Gm23563)
predicted gene, 23563 		ENSMUST00000174900 (Gm23563-201) 102458724-102458974 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D6_0001ENSDARG00000018687ENSDART00000016562ENSDARG00000075249ENSDART00000114906ENSDARG00000097315ENSDART00000154240ENSDART00000157112CIL_0004D6_0002ENSG00000005961ENST00000262407ENST00000587295ENST00000588098ENST00000589645ENST00000591990ENST00000592075ENST00000592226ENST00000592253ENST00000592462ENST00000592944ENSG00000161682ENST00000293443ENST00000588067ENST00000589407ENST00000592560ENSG00000267634ENST00000590816CIL_0004D6_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D6_0001ENSDARG00000018687ENSDART00000016562ENSDARG00000075249ENSDART00000114906ENSDARG00000097315ENSDART00000154240ENSDART00000157112CIL_0004D6_0002ENSG00000005961ENST00000262407ENST00000587295ENST00000588098ENST00000589645ENST00000592226ENST00000592253ENST00000592462ENST00000592944ENSG00000161682ENST00000293443ENST00000588067ENST00000592560ENSG00000267634ENST00000590816CIL_0004D6_0003ENSMUSG00000034664ENSMUST00000103086ENSMUST00000128752ENSMUST00000130433ENSMUST00000131247ENSMUST00000134735ENSMUST00000149519ENSMUST00000151625ENSMUSG00000034685ENSMUST00000049057ENSMUSG00000034708ENSMUST00000049460ENSMUST00000125819ENSMUST00000135517ENSMUSG00000092641ENSMUST00000174900
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000018687 ENSDART00000016562 N/A N/A N/A 0.169±0.06 N/A N/A 3.351±0.90 7.976±4.30 0.037±0.00 N/A 0.269±0.00 N/A N/A N/A
ENSDARG00000075249 ENSDART00000114906 N/A N/A N/A 12.000±5.06 N/A N/A 2.990±0.96 1.090±0.30 0.088±0.00 N/A 1.724±0.00 N/A N/A N/A
ENSDARG00000097315 ENSDART00000154240 N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A N/A N/A N/A N/A
ENSDART00000157112 N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005961 ENST00000262407 1.052±0.00 0.256±0.00 0.041±0.00 0.199±0.16 0.234±0.00 0.231±0.12 0.088±0.00 0.073±0.00 0.021±0.00 2.701±2.49 N/A 0.157±0.09 0.580±0.06 0.810±0.08
ENST00000587295 N/A N/A N/A N/A 0.493±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588098 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A
ENST00000591990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592075 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592226 N/A N/A N/A N/A N/A 0.050±0.00 N/A 0.176±0.00 N/A N/A 0.092±0.00 0.201±0.01 N/A N/A
ENST00000592253 N/A N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592462 N/A 0.176±0.00 N/A 0.229±0.00 0.186±0.00 N/A 0.044±0.00 0.256±0.00 0.308±0.00 N/A N/A 0.169±0.10 N/A 0.446±0.00
ENST00000592944 N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000161682 ENST00000293443 0.461±0.00 0.696±0.00 N/A 6.908±5.33 6.104±0.00 0.532±0.39 0.179±0.11 0.801±0.00 0.093±0.05 N/A 0.013±0.00 5.327±5.67 1.317±0.58 1.628±0.80
ENST00000588067 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000589407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592560 N/A N/A N/A N/A N/A N/A 0.370±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000267634 ENST00000590816 N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A 0.017±0.00 0.018±0.00 0.017±0.00 0.045±0.00 N/A 0.051±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034664 ENSMUST00000103086 N/A N/A 0.616±0.00 0.900±0.00 3.122±0.68 0.401±0.20 1.052±0.58 0.780±0.25 8.107±8.21 2.940±0.44 0.109±0.06 0.673±0.00 1.819±0.86 0.547±0.00
ENSMUST00000124767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128752 N/A 2.303±1.11 N/A N/A N/A N/A N/A N/A N/A N/A 0.477±0.00 3.409±0.63 N/A N/A
ENSMUST00000130433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.946±2.63 0.635±0.00
ENSMUST00000130757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131247 N/A N/A N/A N/A 3.042±0.00 N/A N/A N/A N/A N/A 0.265±0.00 1.138±0.28 N/A 0.712±0.00
ENSMUST00000134735 1.920±0.14 1.837±0.59 2.362±0.79 N/A N/A 1.157±0.20 N/A 3.026±0.45 N/A N/A 0.269±0.00 3.463±1.67 N/A 0.472±0.00
ENSMUST00000145925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149519 0.482±0.00 0.335±0.00 N/A N/A N/A 0.255±0.00 0.106±0.00 N/A N/A N/A 0.148±0.07 0.719±0.29 0.206±0.00 N/A
ENSMUST00000151625 N/A N/A N/A N/A 5.967±0.00 N/A N/A 2.094±0.00 N/A N/A 0.239±0.10 N/A N/A N/A
ENSMUSG00000034685 ENSMUST00000049057 19.899±0.21 6.106±0.90 N/A 48.473±11.10 9.016±0.55 4.830±0.61 N/A 5.934±0.00 N/A 6.836±0.24 N/A 20.723±4.66 N/A 0.864±0.00
ENSMUST00000145190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152015 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034708 ENSMUST00000049460 119.204±21.65 50.957±30.38 97.619±8.85 11.061±5.03 89.692±28.33 53.462±24.44 35.751±8.06 68.441±12.15 41.368±14.39 82.331±14.11 6.579±0.61 78.389±41.37 58.276±32.55 8.007±0.99
ENSMUST00000123500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125819 N/A N/A N/A 18.906±0.00 N/A N/A N/A N/A N/A N/A 2.330±0.00 103.225±0.00 100.268±50.88 5.048±0.00
ENSMUST00000127530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135517 N/A 92.659±11.83 N/A N/A 69.766±14.48 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092641 ENSMUST00000174900 0.874±0.20 N/A 0.101±0.00 0.265±0.23 0.721±0.02 0.674±0.04 0.820±0.00 0.587±0.16 0.671±0.56 0.582±0.05 N/A 2.726±1.81 0.285±0.31 0.452±0.03

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