C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004DK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000229474-ENSG00000166710 CGP 9606 15:44665732-44718877
GeneTranscriptPositionBiotype
ENSG00000166710 (B2M)
beta-2-microglobulin 		ENST00000349264 (B2M-007) 44711517-44718067 nonsense_mediated_decay
ENST00000544417 (B2M-201) 44711487-44718159 protein_coding
ENST00000557901 (B2M-003) 44711519-44717622 nonsense_mediated_decay
ENST00000558401 (B2M-001) 44711477-44718877 protein_coding
ENST00000559220 (B2M-012) 44714507-44718144 processed_transcript
ENST00000559720 (B2M-002) 44711487-44717765 nonsense_mediated_decay
ENST00000559907 (B2M-008) 44711927-44717704 processed_transcript
ENST00000559916 (B2M-006) 44711513-44717029 protein_coding
ENST00000560556 (B2M-010) 44715726-44716939 processed_transcript
ENST00000560681 (B2M-009) 44711959-44716559 retained_intron
ENST00000561139 (B2M-011) 44715500-44718145 nonsense_mediated_decay
ENST00000561424 (B2M-013) 44711509-44718851 nonsense_mediated_decay
ENST00000623550 (B2M-005) 44715817-44718145 TEC
ENSG00000206957 (Y_RNA)
Y RNA 		ENST00000384230 (Y_RNA.1-657) 44697333-44697430 misc_RNA
ENSG00000229474 (PATL2)
protein associated with topoisomerase II homolog 2 (yeast) 		ENST00000434130 (PATL2-201) 44665733-44676888 protein_coding
ENST00000558159 (PATL2-005) 44665733-44667019 retained_intron
ENST00000558481 (PATL2-004) 44669803-44675619 nonsense_mediated_decay
ENST00000558573 (PATL2-008) 44674763-44711316 processed_transcript
ENST00000558809 (PATL2-006) 44665735-44668485 protein_coding
ENST00000560110 (PATL2-002) 44672118-44676824 protein_coding
ENST00000560775 (PATL2-001) 44665732-44676550 protein_coding
ENST00000560780 (PATL2-003) 44665735-44676888 protein_coding
ENST00000561082 (PATL2-007) 44665736-44667278 retained_intron
CIL_0004DK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027233-ENSMUSG00000027233 CGP 10090 2:122120108-122186189
GeneTranscriptPositionBiotype
ENSMUSG00000027233 (Patl2)
protein associated with topoisomerase II homolog 2 (yeast) 		ENSMUST00000028665 (Patl2-001) 122120108-122186189 protein_coding
ENSMUSG00000033368 (Trim69)
tripartite motif-containing 69 		ENSMUST00000036089 (Trim69-001) 122160700-122179027 protein_coding
ENSMUST00000143088 (Trim69-002) 122160802-122179024 processed_transcript
ENSMUSG00000060802 (B2m)
beta-2 microglobulin 		ENSMUST00000102476 (B2m-001) 122147686-122153083 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DK_0001ENSG00000166710ENST00000349264ENST00000544417ENST00000557901ENST00000558401ENST00000559220ENST00000559720ENST00000559907ENST00000559916ENST00000560556ENST00000560681ENST00000561139ENST00000561424ENST00000623550ENSG00000206957ENST00000384230ENSG00000229474ENST00000434130ENST00000558159ENST00000558481ENST00000558573ENST00000558809ENST00000560110ENST00000560775ENST00000560780ENST00000561082CIL_0004DK_0002ENSMUSG00000027233ENSMUST00000028665ENSMUSG00000033368ENSMUST00000036089ENSMUST00000143088ENSMUSG00000060802ENSMUST00000102476
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004DK_0001ENSG00000166710ENST00000349264ENST00000544417ENST00000557901ENST00000559220ENST00000561139ENST00000561424ENSG00000206957ENST00000384230ENSG00000229474ENST00000434130ENST00000558159ENST00000558481ENST00000558573ENST00000558809ENST00000560775ENST00000560780ENST00000561082CIL_0004DK_0002ENSMUSG00000027233ENSMUST00000028665ENSMUSG00000033368ENSMUST00000036089ENSMUST00000143088ENSMUSG00000060802ENSMUST00000102476
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166710 ENST00000349264 402.493±0.00 654.770±0.00 N/A 95.886±0.00 292.787±0.00 344.475±0.00 330.623±0.00 470.359±0.00 416.278±0.00 1965.080±0.00 124.360±0.00 380.064±119.67 476.106±21.29 128.863±76.69
ENST00000544417 736.610±0.00 932.619±0.00 31.262±0.00 138.718±94.62 476.949±256.72 413.579±261.17 107.674±51.25 318.549±156.40 183.171±55.37 769.464±415.90 49.623±23.65 283.558±70.40 357.561±0.00 585.615±0.00
ENST00000557901 930.183±0.00 1177.300±0.00 N/A 214.697±0.00 881.740±0.00 600.540±0.00 432.658±0.00 609.782±0.00 582.348±0.00 3840.220±0.00 162.687±0.00 641.195±0.00 552.763±0.00 242.065±180.88
ENST00000558401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559220 N/A N/A 130.614±0.00 213.314±0.00 733.994±0.00 649.898±0.00 142.438±0.00 668.755±0.00 385.319±0.00 977.542±0.00 115.116±0.00 645.450±107.25 860.827±439.22 N/A
ENST00000559720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 362.689±0.00 388.036±0.00 35.326±0.00
ENST00000561424 N/A N/A 56.731±0.00 67.752±0.00 419.327±0.00 274.356±0.00 75.116±0.00 310.585±0.00 173.178±0.00 543.797±0.00 73.335±0.00 612.292±206.45 1105.340±105.06 N/A
ENST00000623550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206957 ENST00000384230 N/A 1.608±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229474 ENST00000434130 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.838±0.00 N/A N/A N/A 0.107±0.00
ENST00000558159 N/A N/A N/A N/A 0.219±0.00 N/A N/A N/A N/A N/A N/A 0.272±0.14 N/A 0.077±0.01
ENST00000558481 N/A N/A N/A N/A N/A 0.027±0.00 N/A 0.652±0.13 N/A N/A N/A 0.505±0.29 0.058±0.00 N/A
ENST00000558573 0.080±0.00 1.481±0.00 0.290±0.00 0.089±0.06 N/A 0.068±0.06 N/A 0.023±0.00 0.101±0.07 0.400±0.06 0.011±0.00 0.057±0.00 0.053±0.00 0.013±0.00
ENST00000558809 N/A N/A N/A 0.171±0.00 N/A N/A 0.235±0.00 N/A 0.907±0.79 N/A N/A N/A N/A N/A
ENST00000560110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560775 0.037±0.00 1.750±0.00 0.118±0.00 N/A 0.059±0.00 0.073±0.03 N/A N/A N/A N/A N/A 0.305±0.17 0.075±0.02 0.055±0.00
ENST00000560780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.309±0.00 0.075±0.00 0.080±0.00
ENST00000561082 0.080±0.00 N/A N/A N/A 0.264±0.00 N/A 1.154±0.00 N/A N/A 1.050±0.00 N/A N/A 0.203±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027233 ENSMUST00000028665 N/A 0.041±0.01 0.003±0.00 0.009±0.00 0.030±0.00 N/A 0.021±0.00 0.020±0.01 0.031±0.01 0.031±0.01 0.017±0.00 1.054±0.47 1.267±0.48 0.269±0.17
ENSMUSG00000033368 ENSMUST00000036089 0.101±0.04 0.066±0.00 0.023±0.01 0.008±0.00 0.070±0.02 N/A 0.027±0.02 0.036±0.03 0.064±0.03 0.063±0.04 0.030±0.01 0.090±0.04 0.154±0.07 65.145±22.11
ENSMUST00000143088 0.011±0.01 0.051±0.00 N/A N/A 0.108±0.00 N/A 0.018±0.00 0.037±0.03 0.012±0.00 0.034±0.00 N/A N/A 0.218±0.00 N/A
ENSMUSG00000060802 ENSMUST00000102476 1282.028±410.99 1355.892±133.95 356.093±15.47 12.911±5.85 1588.861±583.88 584.213±64.99 229.822±98.90 444.797±71.23 976.003±767.96 874.900±409.36 56.827±13.59 309.283±100.95 178.765±90.74 54.589±48.43

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