C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004EP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156011-ENSG00000104611 CGP 9606 8:18527301-19396218
GeneTranscriptPositionBiotype
ENSG00000104611 (SH2D4A)
SH2 domain containing 4A 		ENST00000265807 (SH2D4A-001) 19313617-19396218 protein_coding
ENST00000518040 (SH2D4A-002) 19313696-19395027 protein_coding
ENST00000518093 (SH2D4A-004) 19360788-19364099 retained_intron
ENST00000519207 (SH2D4A-003) 19313976-19394953 protein_coding
ENST00000522328 (SH2D4A-005) 19363809-19373617 retained_intron
ENST00000523736 (SH2D4A-006) 19319590-19361298 protein_coding
ENST00000620990 (SH2D4A-201) 19357203-19394724 protein_coding
ENSG00000187229 (RP11-161I2.1)
 ENST00000524252 (RP11-161I2.1-001) 18720905-18734405 antisense
ENSG00000201157 (SNORA62)
Small nucleolar RNA SNORA62/SNORA6 family 		ENST00000364287 (SNORA62.1-201) 18979619-18979772 snoRNA
ENSG00000250316 (RP11-618M23.1)
 ENST00000507289 (RP11-618M23.1-001) 19237737-19241912 unprocessed_pseudogene
ENSG00000251963 (AC090420.1)
 ENST00000516154 (AC090420.1-201) 18809500-18809626 miRNA
ENSG00000253280 (RP11-618M23.4)
 ENST00000521016 (RP11-618M23.4-001) 19254241-19257334 lincRNA
ENSG00000253335 (RP11-420B22.1)
 ENST00000522670 (RP11-420B22.1-001) 18989279-19000952 antisense
ENSG00000253557 (RP11-1080G15.1)
 ENST00000517949 (RP11-1080G15.1-001) 19086895-19245489 lincRNA
ENST00000518417 (RP11-1080G15.1-003) 19183674-19235677 lincRNA
ENST00000520920 (RP11-1080G15.1-002) 19084992-19259469 lincRNA
ENSG00000254201 (RP11-618M23.2)
 ENST00000519185 (RP11-618M23.2-001) 19246350-19249240 lincRNA
ENSG00000254242 (RP11-1080G15.2)
 ENST00000518324 (RP11-1080G15.2-001) 19091733-19115024 lincRNA
ENSG00000270255 (RP11-420B22.2)
 ENST00000603110 (RP11-420B22.2-001) 19001627-19001950 processed_pseudogene
ENSG00000274368 (AC100800.1)
 ENST00000584892 (AC100800.1-201) 18582843-18582943 miRNA
ENSG00000278886 (RP11-108A14.1)
 ENST00000623639 (RP11-108A14.1-001) 18864681-18865247 TEC
ENSG00000279858 (RP11-618M23.5)
 ENST00000623082 (RP11-618M23.5-001) 19375128-19375622 TEC
ENSG00000279919 (RP11-618M23.3)
 ENST00000624331 (RP11-618M23.3-001) 19277284-19277573 TEC
CIL_0004EP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030465-ENSMUSG00000053886 CGP 10090 8:67689082-68347694
GeneTranscriptPositionBiotype
ENSMUSG00000030465 (Psd3)
pleckstrin and Sec7 domain containing 3 		ENSMUST00000038959 (Psd3-201) 67689082-67974574 protein_coding
ENSMUST00000059374 (Psd3-005) 67711526-67818233 protein_coding
ENSMUST00000093468 (Psd3-002) 67696881-67910932 protein_coding
ENSMUST00000093469 (Psd3-003) 67696047-67974574 protein_coding
ENSMUST00000098696 (Psd3-202) 67689082-67974574 protein_coding
ENSMUST00000120071 (Psd3-004) 67689089-67818295 protein_coding
ENSMUST00000145595 (Psd3-006) 67903648-67951879 retained_intron
ENSMUST00000146480 (Psd3-007) 67878278-67904120 processed_transcript
ENSMUST00000150169 (Psd3-001) 67790470-68062286 retained_intron
ENSMUSG00000053886 (Sh2d4a)
SH2 domain containing 4A 		ENSMUST00000066594 (Sh2d4a-001) 68276567-68347694 protein_coding
ENSMUSG00000077545 (Gm22018)
predicted gene, 22018 		ENSMUST00000104357 (Gm22018-201) 68010340-68010470 snoRNA
ENSMUSG00000086883 (Gm15992)
predicted gene 15992 		ENSMUST00000130307 (Gm15992-001) 67810985-67811374 sense_intronic
ENSMUSG00000095306 (Gm21807)
predicted gene, 21807 		ENSMUST00000178529 (Gm21807-201) 68120351-68121527 lincRNA
ENSMUST00000185416 (Gm21807-001) 68099492-68121313 lincRNA
ENSMUSG00000097609 (Gm26659)
predicted gene, 26659 		ENSMUST00000181816 (Gm26659-201) 68218173-68228413 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004EP_0001ENSG00000104611ENST00000265807ENST00000518040ENST00000519207ENST00000522328ENST00000523736ENST00000620990ENSG00000187229ENST00000524252ENSG00000201157ENST00000364287ENSG00000250316ENST00000507289ENSG00000251963ENST00000516154ENSG00000253280ENST00000521016ENSG00000253335ENST00000522670ENSG00000253557ENST00000517949ENST00000518417ENST00000520920ENSG00000254201ENST00000519185ENSG00000254242ENST00000518324ENSG00000270255ENST00000603110ENSG00000274368ENST00000584892ENSG00000278886ENST00000623639ENSG00000279858ENST00000623082ENSG00000279919ENST00000624331CIL_0004EP_0002ENSMUSG00000030465ENSMUST00000038959ENSMUST00000093468ENSMUST00000093469ENSMUST00000098696ENSMUST00000120071ENSMUST00000150169ENSMUSG00000053886ENSMUST00000066594ENSMUSG00000077545ENSMUST00000104357ENSMUSG00000086883ENSMUST00000130307ENSMUSG00000095306ENSMUST00000178529ENSMUST00000185416ENSMUSG00000097609ENSMUST00000181816
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104611 ENST00000265807 0.599±0.00 N/A 0.770±0.00 0.549±0.00 0.772±0.00 1.933±0.00 0.126±0.00 2.143±0.09 1.539±0.00 N/A 0.074±0.00 4.410±1.61 4.505±3.02 N/A
ENST00000518040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A N/A
ENST00000518093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519207 N/A 0.165±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENST00000523736 N/A N/A 7.282±0.00 0.232±0.00 1.688±0.00 N/A 0.660±0.00 N/A 1.956±0.00 N/A 0.769±0.00 4.059±0.00 14.024±0.00 0.355±0.00
ENST00000620990 N/A 0.284±0.00 N/A N/A N/A N/A 0.157±0.00 N/A N/A N/A 0.092±0.00 N/A N/A 0.447±0.00
ENSG00000187229 ENST00000524252 0.025±0.00 0.045±0.00 0.240±0.00 0.065±0.04 0.047±0.00 N/A 0.089±0.00 0.265±0.00 0.128±0.00 N/A N/A 0.131±0.18 0.011±0.00 0.004±0.00
ENSG00000201157 ENST00000364287 N/A N/A N/A 0.265±0.00 N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000250316 ENST00000507289 N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.10
ENSG00000251963 ENST00000516154 N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A 0.627±0.00 N/A 0.804±0.00 N/A N/A
ENSG00000253280 ENST00000521016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00
ENSG00000253335 ENST00000522670 N/A 0.075±0.00 N/A N/A 0.050±0.00 N/A 0.047±0.00 N/A N/A N/A N/A 0.057±0.00 N/A N/A
ENSG00000253557 ENST00000517949 N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 4.503±0.00
ENST00000518417 N/A 0.325±0.00 N/A N/A 0.102±0.00 0.081±0.00 N/A N/A N/A N/A N/A 0.042±0.00 0.141±0.05 N/A
ENST00000520920 N/A N/A N/A 0.106±0.00 0.051±0.00 N/A N/A 0.026±0.00 0.088±0.00 N/A 0.088±0.00 0.040±0.00 N/A N/A
ENSG00000254201 ENST00000519185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.740±0.00
ENSG00000254242 ENST00000518324 0.030±0.00 0.160±0.00 N/A 0.034±0.00 0.033±0.00 N/A 0.086±0.00 0.162±0.00 N/A 0.154±0.00 N/A 0.046±0.00 0.103±0.00 0.978±0.42
ENSG00000270255 ENST00000603110 N/A 0.057±0.00 N/A 0.200±0.00 N/A 0.206±0.00 N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A
ENSG00000274368 ENST00000584892 1.013±0.00 1.076±0.00 N/A 0.291±0.00 1.716±0.00 N/A N/A 0.280±0.00 N/A N/A 1.791±0.00 19.354±0.00 N/A 1.286±0.68
ENSG00000278886 ENST00000623639 N/A 0.490±0.00 N/A 0.042±0.00 0.631±0.00 0.776±0.00 0.056±0.00 1.980±1.84 0.447±0.00 0.242±0.11 N/A 0.712±0.51 N/A 0.096±0.04
ENSG00000279858 ENST00000623082 N/A N/A N/A N/A 0.594±0.00 N/A N/A N/A N/A N/A N/A 0.130±0.00 0.090±0.00 N/A
ENSG00000279919 ENST00000624331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030465 ENSMUST00000038959 N/A 0.556±0.00 N/A 0.920±0.05 0.625±0.00 0.295±0.00 N/A N/A N/A N/A N/A 0.638±0.29 N/A N/A
ENSMUST00000059374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000093468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.219±2.16
ENSMUST00000093469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.614±0.02
ENSMUST00000098696 N/A 0.552±0.00 0.448±0.00 N/A N/A 0.288±0.00 N/A N/A N/A N/A N/A 0.720±0.32 N/A N/A
ENSMUST00000120071 0.711±0.25 3.099±1.19 2.401±0.19 8.061±6.07 1.333±1.07 2.011±0.55 2.722±0.21 0.794±0.37 1.191±0.54 2.716±1.29 0.544±0.27 2.082±0.67 0.576±0.04 1.886±1.08
ENSMUST00000145595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150169 N/A 2.530±0.14 N/A N/A N/A 1.879±0.39 N/A N/A 1.464±0.20 N/A N/A 1.767±0.20 0.669±0.00 N/A
ENSMUSG00000053886 ENSMUST00000066594 2.408±0.34 2.950±0.92 8.522±1.27 0.112±0.04 2.575±0.50 12.261±0.92 2.430±1.08 5.600±0.37 3.701±1.62 6.816±0.61 0.602±0.12 7.122±1.97 3.207±2.04 1.430±0.31
ENSMUSG00000077545 ENSMUST00000104357 N/A N/A N/A N/A N/A N/A N/A N/A 3.697±0.00 N/A N/A 6.670±0.00 N/A N/A
ENSMUSG00000086883 ENSMUST00000130307 1.427±0.00 N/A N/A N/A 5.311±0.00 N/A N/A N/A N/A N/A 0.356±0.00 N/A N/A 0.935±0.01
ENSMUSG00000095306 ENSMUST00000178529 0.952±0.29 2.736±0.00 0.326±0.02 N/A 0.512±0.39 0.549±0.12 0.221±0.01 0.167±0.03 0.351±0.19 3.643±0.46 1.144±0.23 0.596±0.23 0.195±0.08 0.089±0.05
ENSMUST00000185416 0.749±0.00 N/A N/A 0.223±0.06 0.653±0.47 0.432±0.11 0.539±0.18 0.208±0.06 0.260±0.11 0.520±0.00 0.398±0.00 1.252±0.62 0.550±0.23 0.148±0.00
ENSMUSG00000097609 ENSMUST00000181816 0.246±0.10 0.244±0.10 0.102±0.01 0.237±0.02 0.350±0.10 0.347±0.10 0.445±0.05 0.156±0.04 0.099±0.06 0.388±0.10 0.019±0.02 0.352±0.14 0.093±0.03 0.435±0.10

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